Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001188

Physical Location & Seq

Genomic Coordinates Forward (+)

25783350 .. 25785466

Gene Structure 2117 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G284300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGCTGCAGCTTCAAGTGATTCCATACCCTCTGTAAACAAGGCTTGGGTGTACTCAGAATATGGAAAGGCTGCAGATGTTTTGAAACTTGATCCCAATGTTCCTGTTCCTGAAATAAAGGAAGACCAGGTGCTCATCAAGGTGGTTGCTGCAGCTCTTAACCCAGTTGATTATAAGAGGATGTTTGGGTATTTTAAGGCCACTGACTCTCCTCTACCTACGGTTCCCGGGTATGATGTTGCTGGTGTGGTGGTGAAGGTGGGAAGCCAAGTAACAAAGTTTAAGGTGGGGGATGAAGTATATGGGGATCTCAATGAGAAAGCTTTGGAGAACCCAACAAGGTTTGGGTCTTTGGCAGAGTACACTGCTGCAGCAGAAAGAGTTTTGGCTCTCAAACCCCAAAATCTGAGTTTTATTGAAGCTGCTAGCCTTCCCCTGGCTATTGAGACTGCCTATGAAGGGCTTGAACGAACTGAATTTTCTGCTGGTAAATCCATTCTTGTTTTAGGAGGCGCTGGGGGAGTGGGAACACATGTTGTTCAGCTAGCAAAGCATGTTTTTGGTGCTTCAAAAGTAGCAGCAACTGCAAGCACTAGAAAACTGGAGCTGTTGAGAAGCTTGGGTGCTGATTTGGCTGTCGACTACACCAAGGAGAAGTATGAAGAACTGCCTGAGAAATTTGATGTGGTATATGATACAGTTGGGGAGTCTGATAGGGCAGTGAAGGCAGTGAAAGAAGGAGGGAAGGTAGTGACAATAGTACCAGGTCCAGTAGCAGCAGGGGCCTTCATATTTATACTGACTTCAACTGGGACTATATTGGAGAAGCTGAAGCCATACTTGGAGAGTGGGAAGGTGAAGCCGGTGCTTGATCCCACAAGCCCATATCCCTTTTCCAAGACTGTTGAAGCATTTGCTTACCTTGAAACCTCCAGGGCTACAGGGAAGGTGGTTGTGCATCCCATCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N ADH_zinc_N_2

Protein Analysis

324

Amino Acids

34.4

Weight (kDa)

5.81

Isoelectric Point (pI)

24.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23740
fragaria_vesca	FvH4_4g34500 FvH4_6g50700
malus_domestica	MD09G1033200.v1.1 MD09G1033600.v1.1 MD09G1033700.v1.1 MD09G1034000.v1.1 MD13G1092200.v1.1 MD16G1092800.v1.1
prunus_persica	Prupe.1G253500_v2.0.a1 Prupe.3G284300_v2.0.a1 Prupe.3G284400_v2.0.a1 Prupe.3G284700_v2.0.a1 Prupe.3G284800_v2.0.a1 Prupe.3G284900_v2.0.a1
pyrus_communis	pycom111g02680 pycom111g02700 pycom13g08010 pycom16g07920
rosa_chinensis	RchiOBHm_Chr2g0171461 RchiOBHm_Chr2g0171481 RchiOBHm_Chr2g0171491 RchiOBHm_Chr2g0172531 RchiOBHm_Chr4g0443881
rosa_laevigata	RLG00000005881 RLG00000022016 RLG00000022019 RLG00000022020 RLG00000022113 RLG00000023107
rosa_multiflora	Rmu_sc0000912.1_g000009 Rmu_sc0006783.1_g000002 Rmu_sc0006783.1_g000005 Rmu_sc0010179.1_g000003 Rmu_sc0019062.1_g000006
rosa_roxburghii	Rroxscaffold_2G00080590 Rroxscaffold_2G00080610 Rroxscaffold_2G00080630 Rroxscaffold_5G00384440
rosa_rugosa	Rorug02G0554600 Rorug02G0554700 Rorug02G0554800 Rorug04G0348000
rosa_samantha	Rh2AG628800 Rh2AG629000 Rh2BG639300 Rh2BG639500 Rh2BG639600 Rh2CG607900 Rh2CG608100 Rh2CG608200 Rh2CG615900 Rh4DG414600
rosa_wichuraiana	Rw2G052090 Rw2G052100 Rw2G052590 Rw4G035080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	174
AccI	GTMKAC	1 cut(s)	639
AclWI	GGATC	3 cut(s)	86, 315, 866
AcsI	RAATTY	2 cut(s)	476, 677
AcuI	CTGAAG	1 cut(s)	851
AfaI	GTAC	3 cut(s)	53, 362, 762
AfiI	CCNNNNNNNGG	2 cut(s)	436, 459
AflIII	ACRYGT	1 cut(s)	532
AgsI	TTSAA	8 cut(s)	15, 85, 419, 467, 570, 807, 908, 926
AjnI	CCWGG	4 cut(s)	126, 435, 763, 932
AjuI	GAANNNNNNNTTGG	2 cut(s)	824, 856
AluBI	AGCT	8 cut(s)	11, 155, 323, 422, 544, 607, 618, 829
AluI	AGCT	8 cut(s)	11, 155, 323, 422, 544, 607, 618, 829
Alw21I	GWGCWC	1 cut(s)	135
Alw26I	GTCTC	1 cut(s)	440
AlwI	GGATC	3 cut(s)	86, 315, 866
AlwNI	CAGNNNCTG	1 cut(s)	584
Ama87I	CYCGRG	1 cut(s)	227
AoxI	GGCC	2 cut(s)	198, 783
ApoI	RAATTY	2 cut(s)	476, 677
AspLEI	GCGC	1 cut(s)	515
AspS9I	GGNCC	2 cut(s)	767, 783
AsuC2I	CCSGG	2 cut(s)	228, 229
AsuHPI	GGTGA	2 cut(s)	265, 868
AsuNHI	GCTAGC	2 cut(s)	425, 544
AvaI	CYCGRG	1 cut(s)	227
AvaII	GGWCC	1 cut(s)	767
BaeI	ACNNNNGTAYC	2 cut(s)	744, 777
BbsI	GAAGAC	1 cut(s)	129
Bbv12I	GWGCWC	1 cut(s)	135
BbvI	GCAGC	9 cut(s)	20, 58, 136, 164, 355, 383, 409, 590, 788
BccI	CCATC	1 cut(s)	971
BciT130I	CCWGG	4 cut(s)	128, 437, 765, 934
BcnI	CCSGG	2 cut(s)	228, 229
BcoDI	GTCTC	1 cut(s)	440
BfaI	CTAG	3 cut(s)	426, 545, 594
BfmI	CTRYAG	5 cut(s)	6, 72, 150, 369, 939
BfoI	RGCGCY	1 cut(s)	516
Bme1390I	CCNGG	6 cut(s)	128, 228, 229, 437, 765, 934
Bme18I	GGWCC	1 cut(s)	767
BmeT110I	CYCGRG	1 cut(s)	227
BmgT120I	GGNCC	2 cut(s)	767, 783
BmiI	GGNNCC	2 cut(s)	225, 784
BmrFI	CCNGG	6 cut(s)	128, 228, 229, 437, 765, 934
BmrI	ACTGGG	2 cut(s)	158, 819
BmsI	GCATC	1 cut(s)	967
BmtI	GCTAGC	2 cut(s)	429, 548
BmuI	ACTGGG	2 cut(s)	158, 819
BpiI	GAAGAC	1 cut(s)	129
BpmI	CTGGAG	2 cut(s)	623, 916
BpuMI	CCSGG	2 cut(s)	228, 229
BsaJI	CCNNGG	4 cut(s)	227, 435, 648, 933
BsaXI	ACNNNNNCTCC	4 cut(s)	193, 223, 732, 762
Bsc4I	CCNNNNNNNGG	2 cut(s)	436, 459
Bse118I	RCCGGY	1 cut(s)	862
Bse1I	ACTGG	4 cut(s)	164, 606, 770, 814
BseBI	CCWGG	4 cut(s)	128, 437, 765, 934
BseDI	CCNNGG	4 cut(s)	227, 435, 648, 933
BseGI	GGATG	4 cut(s)	186, 298, 958, 963
BseLI	CCNNNNNNNGG	2 cut(s)	436, 459
BseMII	CTCAG	3 cut(s)	69, 398, 663
BseNI	ACTGG	4 cut(s)	164, 606, 770, 814
BseRI	GAGGAG	1 cut(s)	201
BseXI	GCAGC	9 cut(s)	20, 58, 136, 164, 355, 383, 409, 590, 788
BseYI	CCCAGC	1 cut(s)	515
BshFI	GGCC	2 cut(s)	200, 785
BsiHKAI	GWGCWC	1 cut(s)	135
BsiHKCI	CYCGRG	1 cut(s)	227
BsiSI	CCGG	2 cut(s)	228, 863
BslFI	GGGAC	1 cut(s)	826
BslI	CCNNNNNNNGG	2 cut(s)	436, 459
BsmAI	GTCTC	1 cut(s)	440
BsmFI	GGGAC	1 cut(s)	826
BsnI	GGCC	2 cut(s)	200, 785
BsoBI	CYCGRG	1 cut(s)	227
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp143I	GATC	3 cut(s)	91, 307, 871
BspANI	GGCC	2 cut(s)	200, 785
BspCNI	CTCAG	3 cut(s)	68, 399, 664
BspLI	GGNNCC	2 cut(s)	225, 784
BspMAI	CTGCAG	4 cut(s)	10, 76, 154, 373
BspOI	GCTAGC	2 cut(s)	429, 548
BspPI	GGATC	3 cut(s)	86, 315, 866
BsrFI	RCCGGY	1 cut(s)	862
BsrI	ACTGG	4 cut(s)	164, 606, 770, 814
BssAI	RCCGGY	1 cut(s)	862
BssECI	CCNNGG	4 cut(s)	227, 435, 648, 933
BssMI	GATC	3 cut(s)	91, 307, 871
BssT1I	CCWWGG	1 cut(s)	648
Bst2UI	CCWGG	4 cut(s)	128, 437, 765, 934
Bst4CI	ACNGT	3 cut(s)	223, 700, 904
BstAPI	GCANNNNNTGC	1 cut(s)	584
BstC8I	GCNNGC	3 cut(s)	427, 546, 589
BstDEI	CTNAG	3 cut(s)	55, 407, 672
BstF5I	GGATG	4 cut(s)	186, 298, 958, 963
BstH2I	RGCGCY	1 cut(s)	516
BstHHI	GCGC	1 cut(s)	515
BstKTI	GATC	3 cut(s)	94, 310, 874
BstMAI	GTCTC	1 cut(s)	440
BstMBI	GATC	3 cut(s)	91, 307, 871
BstMWI	GCNNNNNNNGC	5 cut(s)	550, 584, 632, 725, 782
BstNI	CCWGG	4 cut(s)	128, 437, 765, 934
BstNSI	RCATGY	2 cut(s)	536, 557
BstSCI	CCNGG	6 cut(s)	126, 226, 227, 435, 763, 932
BstSFI	CTRYAG	5 cut(s)	6, 72, 150, 369, 939
BstV1I	GCAGC	9 cut(s)	20, 58, 136, 164, 355, 383, 409, 590, 788
BstV2I	GAAGAC	1 cut(s)	129
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
BsuRI	GGCC	2 cut(s)	200, 785
BtsCI	GGATG	4 cut(s)	186, 298, 958, 963
BtsI	GCAGTG	3 cut(s)	363, 726, 735
BtsIMutI	CAGTG	4 cut(s)	201, 363, 726, 735
Cac8I	GCNNGC	3 cut(s)	427, 546, 589
CaiI	CAGNNNCTG	1 cut(s)	584
CfoI	GCGC	1 cut(s)	515
Cfr10I	RCCGGY	1 cut(s)	862
Cfr13I	GGNCC	2 cut(s)	767, 783
Cfr9I	CCCGGG	1 cut(s)	227
CsiI	ACCWGGT	2 cut(s)	126, 763
Csp6I	GTAC	3 cut(s)	52, 361, 761
CviAII	CATG	2 cut(s)	533, 554
CviQI	GTAC	3 cut(s)	52, 361, 761
DdeI	CTNAG	3 cut(s)	55, 407, 672
DpnI	GATC	3 cut(s)	93, 309, 873
DpnII	GATC	3 cut(s)	91, 307, 871
Eco130I	CCWWGG	1 cut(s)	648
Eco47I	GGWCC	1 cut(s)	767
Eco57I	CTGAAG	1 cut(s)	851
Eco88I	CYCGRG	1 cut(s)	227
EcoO109I	RGGNCCY	1 cut(s)	783
EcoRII	CCWGG	4 cut(s)	126, 435, 763, 932
EcoT14I	CCWWGG	1 cut(s)	648
ErhI	CCWWGG	1 cut(s)	648
FaeI	CATG	2 cut(s)	536, 557
FalI	AAGNNNNNCTT	2 cut(s)	824, 856
FaqI	GGGAC	1 cut(s)	826
FatI	CATG	2 cut(s)	532, 553
FblI	GTMKAC	1 cut(s)	639
FokI	GGATG	4 cut(s)	193, 305, 945, 950
FspBI	CTAG	3 cut(s)	426, 545, 594
GlaI	GCGC	1 cut(s)	514
GsaI	CCCAGC	1 cut(s)	519
GsuI	CTGGAG	2 cut(s)	623, 916
HaeII	RGCGCY	1 cut(s)	516
HaeIII	GGCC	2 cut(s)	200, 785
HapII	CCGG	2 cut(s)	228, 863
HhaI	GCGC	1 cut(s)	515
Hin1II	CATG	2 cut(s)	536, 557
Hin6I	GCGC	1 cut(s)	513
HinP1I	GCGC	1 cut(s)	513
HincII	GTYRAC	1 cut(s)	640
HindII	GTYRAC	1 cut(s)	640
HindIII	AAGCTT	2 cut(s)	321, 616
HinfI	GANTC	3 cut(s)	20, 206, 707
HpaII	CCGG	2 cut(s)	228, 863
HphI	GGTGA	2 cut(s)	265, 868
Hpy166II	GTNNAC	4 cut(s)	37, 52, 363, 640
Hpy188I	TCNGA	3 cut(s)	58, 408, 712
Hpy188III	TCNNGA	1 cut(s)	110
Hpy8I	GTNNAC	4 cut(s)	37, 52, 363, 640
HpyAV	CCTTC	9 cut(s)	250, 440, 452, 718, 731, 739, 796, 847, 940
HpyCH4III	ACNGT	3 cut(s)	223, 700, 904
HpyCH4V	TGCA	6 cut(s)	8, 74, 152, 371, 587, 958
HpyF10VI	GCNNNNNNNGC	5 cut(s)	550, 584, 632, 725, 782
HpyF3I	CTNAG	3 cut(s)	55, 407, 672
Hsp92II	CATG	2 cut(s)	536, 557
HspAI	GCGC	1 cut(s)	513
Kzo9I	GATC	3 cut(s)	91, 307, 871
LmnI	GCTCC	1 cut(s)	604
Lsp1109I	GCAGC	9 cut(s)	20, 58, 136, 164, 355, 383, 409, 590, 788
LweI	GCATC	1 cut(s)	967
MabI	ACCWGGT	2 cut(s)	126, 763
MaeI	CTAG	3 cut(s)	426, 545, 594
MaeIII	GTNAC	2 cut(s)	271, 751
MalI	GATC	3 cut(s)	93, 309, 873
MboI	GATC	3 cut(s)	91, 307, 871
MboII	GAAGA	2 cut(s)	134, 674
MflI	RGATCY	1 cut(s)	307
MhlI	GDGCHC	1 cut(s)	135
MluCI	AATT	2 cut(s)	476, 677
MlyI	GAGTC	2 cut(s)	200, 716
MnlI	CCTC	6 cut(s)	40, 171, 222, 503, 734, 940
MseI	TTAA	3 cut(s)	159, 195, 282
MslI	CAYNNNNRTG	1 cut(s)	140
MspI	CCGG	2 cut(s)	228, 863
MspR9I	CCNGG	6 cut(s)	128, 228, 229, 437, 765, 934
MvaI	CCWGG	4 cut(s)	128, 437, 765, 934
MwoI	GCNNNNNNNGC	5 cut(s)	550, 584, 632, 725, 782
NciI	CCSGG	2 cut(s)	228, 229
NdeII	GATC	3 cut(s)	91, 307, 871
NheI	GCTAGC	2 cut(s)	425, 544
NlaIII	CATG	2 cut(s)	536, 557
NlaIV	GGNNCC	2 cut(s)	225, 784
NmuCI	GTSAC	1 cut(s)	751
NspI	RCATGY	2 cut(s)	536, 557
PciI	ACATGT	1 cut(s)	532
PfeI	GAWTC	1 cut(s)	20
PleI	GAGTC	2 cut(s)	200, 715
PpsI	GAGTC	2 cut(s)	200, 715
PscI	ACATGT	1 cut(s)	532
PsiI	TTATAA	1 cut(s)	174
Psp6I	CCWGG	4 cut(s)	126, 435, 763, 932
PspFI	CCCAGC	1 cut(s)	515
PspGI	CCWGG	4 cut(s)	126, 435, 763, 932
PspN4I	GGNNCC	2 cut(s)	225, 784
PspPI	GGNCC	2 cut(s)	767, 783
PstI	CTGCAG	4 cut(s)	10, 76, 154, 373
PstNI	CAGNNNCTG	1 cut(s)	584
PsuI	RGATCY	1 cut(s)	307
RsaI	GTAC	3 cut(s)	53, 362, 762
RsaNI	GTAC	3 cut(s)	52, 361, 761
RseI	CAYNNNNRTG	1 cut(s)	140
SalI	GTCGAC	1 cut(s)	638
SaqAI	TTAA	3 cut(s)	159, 195, 282
Sau3AI	GATC	3 cut(s)	91, 307, 871
Sau96I	GGNCC	2 cut(s)	767, 783
SchI	GAGTC	2 cut(s)	200, 716
ScrFI	CCNGG	6 cut(s)	128, 228, 229, 437, 765, 934
SduI	GDGCHC	1 cut(s)	135
SexAI	ACCWGGT	2 cut(s)	126, 763
SfaNI	GCATC	1 cut(s)	967
SfcI	CTRYAG	5 cut(s)	6, 72, 150, 369, 939
SinI	GGWCC	1 cut(s)	767
SmaI	CCCGGG	1 cut(s)	229
SmiMI	CAYNNNNRTG	1 cut(s)	140
Sse9I	AATT	2 cut(s)	476, 677
SspMI	CTAG	3 cut(s)	426, 545, 594
StyD4I	CCNGG	6 cut(s)	126, 226, 227, 435, 763, 932
StyI	CCWWGG	1 cut(s)	648
TaaI	ACNGT	3 cut(s)	223, 700, 904
TaqI	TCGA	1 cut(s)	639
TasI	AATT	2 cut(s)	476, 677
TatI	WGTACW	2 cut(s)	51, 360
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	3 cut(s)	159, 195, 282
Tru9I	TTAA	3 cut(s)	159, 195, 282
TscAI	CASTG	4 cut(s)	208, 370, 726, 735
TseFI	GTSAC	1 cut(s)	751
Tsp45I	GTSAC	1 cut(s)	751
TspDTI	ATGAA	4 cut(s)	309, 471, 675, 778
TspMI	CCCGGG	1 cut(s)	227
TspRI	CASTG	4 cut(s)	208, 370, 726, 735
VpaK11BI	GGWCC	1 cut(s)	767
XapI	RAATTY	2 cut(s)	476, 677
XceI	RCATGY	2 cut(s)	536, 557
XmaI	CCCGGG	1 cut(s)	227
XmiI	GTMKAC	1 cut(s)	639
XspI	CTAG	3 cut(s)	426, 545, 594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.