Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001188

Physical Location & Seq

Genomic Coordinates Forward (+)

25795565 .. 25797324

Gene Structure 1760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G284700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGCCGAGGCTTCATGTGTATCCACCACACCACCCTCTGTAAACAAGGCTTGGATTTACAGAGAGCATGGAGAAACTGCACATGTTTTGAAGTTTGAAACAAATGTGGCTGTTCCTCAAATAAAGGAAGACCAGGTGCTGATCAAGGTTGTTGCTGCAGCTCTTAACCCAATTGATGCCAAGAGGATCCTTGGCGTTTTCAGGGCCACTGACACTGCTCTGCCTACAGTTCCAGGGTTTGATGTGGCTGGTGTGGTGGTGAAGTTGGGGAGCAAAGCCAGAAAATTTAACATTGGGGATGAAGTGTATGGGGATATCAATGAGGAGGGTAGCATAAACCTGAAGAAGTTTGGGACTTTGGCAGAGTACACTGCTGCAGAAGAAAGATTGTTGGCTCTGAAACCCACAAACCTGAGCTTTGTGGAAGCTGCTAGCCTTCCAATGGCTATGGAGACTGCCTATGAAGGGCTGGAACGAGTTGGGCTTTCTGCTGGCCAGTCCATTCTTGTTTTGGGAGGCGCTGGGGGGCTGGGCACACATGTTATTCAGCTAGCAAAGCATGTTTTTGGTGCCTCCAGAGTAGCAGCCACTGCAAGCACTAAAAAACTTGATTTGCTGAAAAGCTTGGGTGCTGATTTGGCTATCGATTACACTGAGGAGAGTGTGGAAGACCTGCCTGAGAAATTTGATGTGGTGTTTGATGCAGTTGGTCAGTCGGACAAAGCAGTGAAAGCAGTGAAAGCAGAGGGGAGGGTTGTGACAATATTTGGTCCAATAACACCACCAGCCTTCATGTTTGTGCTGACCTCAACTGGGTCCAGTTTAGAGAAACTCAAGCCTTACTTGGAGAGTGGAAAGGTGAAGCCAGTGCTTGATCCCACAGGCCCATATCCATTTTCTAAGACCCTTGAAGCATTTGCCTACCTTCAAACTTCCAGGGCTGCTGGAAAGGTGGTTGTGTATCCCATCCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N ADH_zinc_N_2

Protein Analysis

325

Amino Acids

34.41

Weight (kDa)

5.92

Isoelectric Point (pI)

24.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23740
fragaria_vesca	FvH4_4g34500 FvH4_6g50700
malus_domestica	MD09G1033200.v1.1 MD09G1033600.v1.1 MD09G1033700.v1.1 MD09G1034000.v1.1 MD13G1092200.v1.1 MD16G1092800.v1.1
prunus_persica	Prupe.1G253500_v2.0.a1 Prupe.3G284300_v2.0.a1 Prupe.3G284400_v2.0.a1 Prupe.3G284700_v2.0.a1 Prupe.3G284800_v2.0.a1 Prupe.3G284900_v2.0.a1
pyrus_communis	pycom111g02680 pycom111g02700 pycom13g08010 pycom16g07920
rosa_chinensis	RchiOBHm_Chr2g0171461 RchiOBHm_Chr2g0171481 RchiOBHm_Chr2g0171491 RchiOBHm_Chr2g0172531 RchiOBHm_Chr4g0443881
rosa_laevigata	RLG00000005881 RLG00000022016 RLG00000022019 RLG00000022020 RLG00000022113 RLG00000023107
rosa_multiflora	Rmu_sc0000912.1_g000009 Rmu_sc0006783.1_g000002 Rmu_sc0006783.1_g000005 Rmu_sc0010179.1_g000003 Rmu_sc0019062.1_g000006
rosa_roxburghii	Rroxscaffold_2G00080590 Rroxscaffold_2G00080610 Rroxscaffold_2G00080630 Rroxscaffold_5G00384440
rosa_rugosa	Rorug02G0554600 Rorug02G0554700 Rorug02G0554800 Rorug04G0348000
rosa_samantha	Rh2AG628800 Rh2AG629000 Rh2BG639300 Rh2BG639500 Rh2BG639600 Rh2CG607900 Rh2CG608100 Rh2CG608200 Rh2CG615900 Rh4DG414600
rosa_wichuraiana	Rw2G052090 Rw2G052100 Rw2G052590 Rw4G035080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	681
AccB1I	GGYRCC	1 cut(s)	569
AclWI	GGATC	3 cut(s)	181, 194, 869
AcoI	YGGCCR	2 cut(s)	3, 493
AcsI	RAATTY	2 cut(s)	284, 683
AcuI	CTGAAG	1 cut(s)	362
AfaI	GTAC	1 cut(s)	368
AfiI	CCNNNNNNNGG	3 cut(s)	442, 465, 813
AflIII	ACRYGT	2 cut(s)	82, 538
AgsI	TTSAA	4 cut(s)	91, 98, 911, 929
AjnI	CCWGG	3 cut(s)	132, 232, 935
AluBI	AGCT	5 cut(s)	161, 417, 428, 550, 624
AluI	AGCT	5 cut(s)	161, 417, 428, 550, 624
Alw26I	GTCTC	1 cut(s)	446
AlwI	GGATC	3 cut(s)	181, 194, 869
AlwNI	CAGNNNCTG	2 cut(s)	139, 590
AoxI	GGCC	4 cut(s)	3, 204, 493, 883
ApeKI	GCWGC	6 cut(s)	155, 158, 374, 428, 584, 941
ApoI	RAATTY	2 cut(s)	284, 683
AspLEI	GCGC	1 cut(s)	521
AspS9I	GGNCC	4 cut(s)	204, 770, 816, 884
AsuHPI	GGTGA	2 cut(s)	271, 871
AsuNHI	GCTAGC	2 cut(s)	431, 550
AvaII	GGWCC	2 cut(s)	770, 816
BaeGI	GKGCMC	1 cut(s)	536
BalI	TGGCCA	1 cut(s)	495
BamHI	GGATCC	1 cut(s)	186
BanI	GGYRCC	1 cut(s)	569
BbsI	GAAGAC	2 cut(s)	135, 675
BbvI	GCAGC	6 cut(s)	142, 170, 361, 415, 596, 928
BccI	CCATC	1 cut(s)	974
BciT130I	CCWGG	3 cut(s)	134, 234, 937
BciVI	GTATCC	2 cut(s)	31, 972
BclI	TGATCA	1 cut(s)	141
BcoDI	GTCTC	1 cut(s)	446
BfaI	CTAG	2 cut(s)	432, 551
BfmI	CTRYAG	3 cut(s)	156, 225, 375
BfoI	RGCGCY	1 cut(s)	522
BfuAI	ACCTGC	1 cut(s)	681
BfuI	GTATCC	2 cut(s)	31, 972
BisI	GCNGC	6 cut(s)	156, 159, 375, 429, 585, 942
BlsI	GCNGC	6 cut(s)	157, 160, 376, 430, 586, 943
Bme1390I	CCNGG	3 cut(s)	134, 234, 937
Bme18I	GGWCC	2 cut(s)	770, 816
BmgT120I	GGNCC	4 cut(s)	204, 770, 816, 884
BmiI	GGNNCC	3 cut(s)	188, 571, 817
BmrFI	CCNGG	3 cut(s)	134, 234, 937
BmrI	ACTGGG	1 cut(s)	822
BmsI	GCATC	2 cut(s)	166, 691
BmtI	GCTAGC	2 cut(s)	435, 554
BmuI	ACTGGG	1 cut(s)	822
BpiI	GAAGAC	2 cut(s)	135, 675
BpmI	CTGGAG	1 cut(s)	559
Bpu10I	CCTNAGC	1 cut(s)	413
BpuEI	CTTGAG	1 cut(s)	818
Bsa29I	ATCGAT	1 cut(s)	645
BsaJI	CCNNGG	4 cut(s)	6, 190, 233, 936
Bsc4I	CCNNNNNNNGG	3 cut(s)	442, 465, 813
Bse1I	ACTGG	4 cut(s)	496, 817, 819, 866
BseBI	CCWGG	3 cut(s)	134, 234, 937
BseCI	ATCGAT	1 cut(s)	645
BseDI	CCNNGG	4 cut(s)	6, 190, 233, 936
BseGI	GGATG	2 cut(s)	304, 966
BseLI	CCNNNNNNNGG	3 cut(s)	442, 465, 813
BseMII	CTCAG	3 cut(s)	404, 645, 669
BseNI	ACTGG	4 cut(s)	496, 817, 819, 866
BseRI	GAGGAG	2 cut(s)	338, 671
BseSI	GKGCMC	1 cut(s)	536
BseXI	GCAGC	6 cut(s)	142, 170, 361, 415, 596, 928
BseYI	CCCAGC	2 cut(s)	521, 529
BsgI	GTGCAG	1 cut(s)	63
BshFI	GGCC	4 cut(s)	5, 206, 495, 885
BshNI	GGYRCC	1 cut(s)	569
BshVI	ATCGAT	1 cut(s)	645
BslFI	GGGAC	1 cut(s)	367
BslI	CCNNNNNNNGG	3 cut(s)	442, 465, 813
BsmAI	GTCTC	1 cut(s)	446
BsmFI	GGGAC	1 cut(s)	367
BsnI	GGCC	4 cut(s)	5, 206, 495, 885
Bsp1286I	GDGCHC	1 cut(s)	536
Bsp143I	GATC	3 cut(s)	141, 186, 874
BspANI	GGCC	4 cut(s)	5, 206, 495, 885
BspCNI	CTCAG	3 cut(s)	405, 646, 670
BspDI	ATCGAT	1 cut(s)	645
BspLI	GGNNCC	3 cut(s)	188, 571, 817
BspMAI	CTGCAG	2 cut(s)	160, 379
BspMI	ACCTGC	1 cut(s)	681
BspOI	GCTAGC	2 cut(s)	435, 554
BspPI	GGATC	3 cut(s)	181, 194, 869
BspT107I	GGYRCC	1 cut(s)	569
BsrI	ACTGG	4 cut(s)	496, 817, 819, 866
BssECI	CCNNGG	4 cut(s)	6, 190, 233, 936
BssMI	GATC	3 cut(s)	141, 186, 874
BssT1I	CCWWGG	1 cut(s)	190
Bst2UI	CCWGG	3 cut(s)	134, 234, 937
Bst4CI	ACNGT	1 cut(s)	229
BstAPI	GCANNNNNTGC	1 cut(s)	590
BstC8I	GCNNGC	4 cut(s)	433, 493, 552, 595
BstDEI	CTNAG	4 cut(s)	413, 654, 678, 900
BstF5I	GGATG	2 cut(s)	304, 966
BstH2I	RGCGCY	1 cut(s)	522
BstHHI	GCGC	1 cut(s)	521
BstKTI	GATC	3 cut(s)	144, 189, 877
BstMAI	GTCTC	1 cut(s)	446
BstMBI	GATC	3 cut(s)	141, 186, 874
BstMWI	GCNNNNNNNGC	5 cut(s)	556, 590, 638, 731, 740
BstNI	CCWGG	3 cut(s)	134, 234, 937
BstNSI	RCATGY	3 cut(s)	86, 542, 563
BstSCI	CCNGG	3 cut(s)	132, 232, 935
BstSFI	CTRYAG	3 cut(s)	156, 225, 375
BstSLI	GKGCMC	1 cut(s)	536
BstV1I	GCAGC	6 cut(s)	142, 170, 361, 415, 596, 928
BstV2I	GAAGAC	2 cut(s)	135, 675
BstX2I	RGATCY	1 cut(s)	186
BstYI	RGATCY	1 cut(s)	186
Bsu15I	ATCGAT	1 cut(s)	645
BsuI	GTATCC	2 cut(s)	31, 972
BsuRI	GGCC	4 cut(s)	5, 206, 495, 885
BsuTUI	ATCGAT	1 cut(s)	645
BtsCI	GGATG	2 cut(s)	304, 966
BtsI	GCAGTG	5 cut(s)	213, 369, 588, 732, 741
BtsIMutI	CAGTG	8 cut(s)	207, 213, 369, 588, 651, 732, 741, 873
BveI	ACCTGC	1 cut(s)	681
Cac8I	GCNNGC	4 cut(s)	433, 493, 552, 595
CaiI	CAGNNNCTG	2 cut(s)	139, 590
CfoI	GCGC	1 cut(s)	521
Cfr13I	GGNCC	4 cut(s)	204, 770, 816, 884
ClaI	ATCGAT	1 cut(s)	645
CsiI	ACCWGGT	1 cut(s)	132
Csp6I	GTAC	1 cut(s)	367
CviAII	CATG	6 cut(s)	15, 68, 83, 539, 560, 793
CviQI	GTAC	1 cut(s)	367
DdeI	CTNAG	4 cut(s)	413, 654, 678, 900
DpnI	GATC	3 cut(s)	143, 188, 876
DpnII	GATC	3 cut(s)	141, 186, 874
EaeI	YGGCCR	2 cut(s)	3, 493
Eco130I	CCWWGG	1 cut(s)	190
Eco32I	GATATC	1 cut(s)	316
Eco47I	GGWCC	2 cut(s)	770, 816
Eco57I	CTGAAG	1 cut(s)	362
EcoRII	CCWGG	3 cut(s)	132, 232, 935
EcoRV	GATATC	1 cut(s)	316
EcoT14I	CCWWGG	1 cut(s)	190
ErhI	CCWWGG	1 cut(s)	190
FaeI	CATG	6 cut(s)	18, 71, 86, 542, 563, 796
FalI	AAGNNNNNCTT	2 cut(s)	827, 859
FaqI	GGGAC	1 cut(s)	367
FatI	CATG	6 cut(s)	14, 67, 82, 538, 559, 792
FbaI	TGATCA	1 cut(s)	141
Fnu4HI	GCNGC	6 cut(s)	156, 159, 375, 429, 585, 942
FokI	GGATG	2 cut(s)	311, 953
Fsp4HI	GCNGC	6 cut(s)	156, 159, 375, 429, 585, 942
FspBI	CTAG	2 cut(s)	432, 551
GlaI	GCGC	1 cut(s)	520
GluI	GCNGC	6 cut(s)	156, 159, 375, 429, 585, 942
GsaI	CCCAGC	2 cut(s)	525, 533
GsuI	CTGGAG	1 cut(s)	559
HaeII	RGCGCY	1 cut(s)	522
HaeIII	GGCC	4 cut(s)	5, 206, 495, 885
HhaI	GCGC	1 cut(s)	521
Hin1II	CATG	6 cut(s)	18, 71, 86, 542, 563, 796
Hin6I	GCGC	1 cut(s)	519
HinP1I	GCGC	1 cut(s)	519
HindIII	AAGCTT	1 cut(s)	622
HphI	GGTGA	2 cut(s)	271, 871
Hpy166II	GTNNAC	2 cut(s)	43, 369
Hpy188I	TCNGA	2 cut(s)	399, 718
Hpy188III	TCNNGA	1 cut(s)	576
Hpy8I	GTNNAC	2 cut(s)	43, 369
HpyAV	CCTTC	4 cut(s)	446, 458, 799, 935
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4V	TGCA	5 cut(s)	80, 158, 377, 593, 704
HpyF10VI	GCNNNNNNNGC	5 cut(s)	556, 590, 638, 731, 740
HpyF3I	CTNAG	4 cut(s)	413, 654, 678, 900
Hsp92II	CATG	6 cut(s)	18, 71, 86, 542, 563, 796
HspAI	GCGC	1 cut(s)	519
Ksp22I	TGATCA	1 cut(s)	141
Kzo9I	GATC	3 cut(s)	141, 186, 874
LmnI	GCTCC	1 cut(s)	270
Lsp1109I	GCAGC	6 cut(s)	142, 170, 361, 415, 596, 928
LweI	GCATC	2 cut(s)	166, 691
MabI	ACCWGGT	1 cut(s)	132
MaeI	CTAG	2 cut(s)	432, 551
MaeIII	GTNAC	1 cut(s)	757
MalI	GATC	3 cut(s)	143, 188, 876
MboI	GATC	3 cut(s)	141, 186, 874
MboII	GAAGA	4 cut(s)	140, 355, 392, 680
MfeI	CAATTG	1 cut(s)	171
MflI	RGATCY	1 cut(s)	186
MhlI	GDGCHC	1 cut(s)	536
MlsI	TGGCCA	1 cut(s)	495
MluCI	AATT	3 cut(s)	171, 284, 683
MluNI	TGGCCA	1 cut(s)	495
MmeI	TCCRAC	1 cut(s)	696
Mox20I	TGGCCA	1 cut(s)	495
MscI	TGGCCA	1 cut(s)	495
MseI	TTAA	2 cut(s)	165, 288
MslI	CAYNNNNRTG	1 cut(s)	797
Msp20I	TGGCCA	1 cut(s)	495
MspR9I	CCNGG	3 cut(s)	134, 234, 937
MunI	CAATTG	1 cut(s)	171
MvaI	CCWGG	3 cut(s)	134, 234, 937
MwoI	GCNNNNNNNGC	5 cut(s)	556, 590, 638, 731, 740
NdeII	GATC	3 cut(s)	141, 186, 874
NheI	GCTAGC	2 cut(s)	431, 550
NlaIII	CATG	6 cut(s)	18, 71, 86, 542, 563, 796
NlaIV	GGNNCC	3 cut(s)	188, 571, 817
NmeAIII	GCCGAG	1 cut(s)	31
NmuCI	GTSAC	1 cut(s)	757
NspI	RCATGY	3 cut(s)	86, 542, 563
PciI	ACATGT	2 cut(s)	82, 538
PkrI	GCNGC	6 cut(s)	157, 160, 376, 430, 586, 943
PscI	ACATGT	2 cut(s)	82, 538
Psp6I	CCWGG	3 cut(s)	132, 232, 935
PspFI	CCCAGC	2 cut(s)	521, 529
PspGI	CCWGG	3 cut(s)	132, 232, 935
PspN4I	GGNNCC	3 cut(s)	188, 571, 817
PspPI	GGNCC	4 cut(s)	204, 770, 816, 884
PstI	CTGCAG	2 cut(s)	160, 379
PstNI	CAGNNNCTG	2 cut(s)	139, 590
PsuI	RGATCY	1 cut(s)	186
RsaI	GTAC	1 cut(s)	368
RsaNI	GTAC	1 cut(s)	367
RseI	CAYNNNNRTG	1 cut(s)	797
SaqAI	TTAA	2 cut(s)	165, 288
SatI	GCNGC	6 cut(s)	156, 159, 375, 429, 585, 942
Sau3AI	GATC	3 cut(s)	141, 186, 874
Sau96I	GGNCC	4 cut(s)	204, 770, 816, 884
ScrFI	CCNGG	3 cut(s)	134, 234, 937
SduI	GDGCHC	1 cut(s)	536
SexAI	ACCWGGT	1 cut(s)	132
SfaNI	GCATC	2 cut(s)	166, 691
SfcI	CTRYAG	3 cut(s)	156, 225, 375
SinI	GGWCC	2 cut(s)	770, 816
SmiMI	CAYNNNNRTG	1 cut(s)	797
SmlI	CTYRAG	1 cut(s)	833
SmoI	CTYRAG	1 cut(s)	833
Sse9I	AATT	3 cut(s)	171, 284, 683
SspI	AATATT	1 cut(s)	765
SspMI	CTAG	2 cut(s)	432, 551
StyD4I	CCNGG	3 cut(s)	132, 232, 935
StyI	CCWWGG	1 cut(s)	190
TaaI	ACNGT	1 cut(s)	229
TaqI	TCGA	1 cut(s)	645
TasI	AATT	3 cut(s)	171, 284, 683
TatI	WGTACW	1 cut(s)	366
Tru1I	TTAA	2 cut(s)	165, 288
Tru9I	TTAA	2 cut(s)	165, 288
TscAI	CASTG	8 cut(s)	214, 220, 376, 595, 658, 732, 741, 873
TseFI	GTSAC	1 cut(s)	757
TseI	GCWGC	6 cut(s)	155, 158, 374, 428, 584, 941
Tsp45I	GTSAC	1 cut(s)	757
TspDTI	ATGAA	3 cut(s)	315, 477, 781
TspRI	CASTG	8 cut(s)	214, 220, 376, 595, 658, 732, 741, 873
VpaK11BI	GGWCC	2 cut(s)	770, 816
XapI	RAATTY	2 cut(s)	284, 683
XceI	RCATGY	3 cut(s)	86, 542, 563
XcmI	CCANNNNNNNNNTGG	1 cut(s)	508
XspI	CTAG	2 cut(s)	432, 551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.