pycom16g07920

Zinc-binding dehydrogenase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Forward (+)
5219312 .. 5221648
2337 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g07920.1

Sequence Viewer

Length: 1230 bp
ATGAAAATCCTGGGAGCAGAGAAAGAGACAAGCAGTTTAAGGTTGAGGTCGGAAACAACAATGTTAACCACCACCCCCGCTCTCAGTTCCACTGCTTCTCAGCTCACGTCCCCAAATCAATTTTCTATCAAATTTTCCTTCACATTCCGGGAAAGTAACAACAGAATCGCGGTACCCAAAAGCTCGACTACCCAAAGATCCAAGCTTTCTGCTGGTTTTCCTGTTCTGAGAGTGTCTGCCAGTTCCCAATCAGCCCCTGCTTCGGCAGAGGTGTCAAAGGTCGGGGTTGTGCCGTCGGAGATGAAGGCGTGGGTATATGGGGAATACGGGGGTGTTGATGTTTTGAAATTCGACAACAAAGTTGCGGTTCCTGAGTTGCTGGAGGACCAGGTTCTGGTTAAGGTTGTCGCTGCGGCTCTCAACCCGGTTGACTTCAAGAGGAGGCAGGGAAAATTCAAGAACACTGACTCTCCGCTCCAGACCGTTCCAGGCTATGATGTCGCAGGTGTGGTGGTGAAGGTTGGCAGTAAAGTGAAGGACTTTAAAGAGGGGGACGAAGTGTATGGAGACATACACGAGAAAGCTTTGGAAGGCCCTAAACAATCTAGCTCTCTTGCAGAGTACACTGCTGTTGAAGAGAGGTTATTGGCACTTAAGCCTAAGAATCTGGATTTTGCTCAGGCTGCTTCCCTTCCTCTTGCAATCGAGACAGCTTATGAGGGTCTTGAAAAGACAGGGTTTTCTGCCGGTAAATCTTTGCTTGTTCTAAATGGTGCTGGTGGAGTTGGAAGCCTGGTGATTCAGCTAGCCAAACATGTATTTGGAGCTTCAAGAATAGCAGCCACTGCAAGCACTGGAAAGCTGGAGTTGTTGAAGAGCTTGGGCGCTGATTTAGCAATCGACTACACTAAAGAGAATTTCGAAGAATTGCCAGAAAAATTTGATGTCGTCTATGATGCTATTGGTCAATGTGATAAAGCAGTGAAGGTGGTGAAAGAAGGTGGCAGTGTGGTTGCCTTAACAGGTGCAGTAACACCTCCAGGTTTCAGATTTGTAGTTACTTCTAACGGTGCAGTTCTGAAGAAATTAAACCCGTATTTGGAGAGTGGGAAGGTGAAGCCAGTGATAGACCCCAAAGGGCCCTTTCCTTTCGCCAAGCTTGTGGAGGCTTTCTCTTACCTTGAAACAAATCGGGCCACTGGAAAGGTAGTCATACATCCAATTGAATGA

Protein Analysis

410

Amino Acids

43.62

Weight (kDa)

8.9

Isoelectric Point (pI)

30.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 128 - 220 1.1e-15 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 261 - 340 1.7e-13 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 294 - 405 8.3e-19 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 494
Acc36I ACCTGC 1 cut(s) 494
Acc65I GGTACC 1 cut(s) 172
AccB1I GGYRCC 1 cut(s) 172
AccB7I CCANNNNNTGG 1 cut(s) 394
AccBSI CCGCTC 2 cut(s) 80, 475
AccII CGCG 1 cut(s) 170
AciI CCGC 5 cut(s) 78, 170, 365, 413, 473
AclWI GGATC 1 cut(s) 192
AcsI RAATTY 5 cut(s) 131, 347, 452, 916, 938
AcuI CTGAAG 1 cut(s) 1100
AfaI GTAC 2 cut(s) 174, 623
AfiI CCNNNNNNNGG 3 cut(s) 262, 394, 1099
AflII CTTAAG 1 cut(s) 653
AflIII ACRYGT 1 cut(s) 814
AgsI TTSAA 9 cut(s) 346, 436, 457, 635, 728, 831, 874, 1184, 1226
AjiI CACGTC 1 cut(s) 108
AjnI CCWGG 5 cut(s) 9, 387, 487, 792, 1039
AjuI GAANNNNNNNTTGG 2 cut(s) 106, 138
Alw26I GTCTC 3 cut(s) 20, 561, 701
AlwI GGATC 1 cut(s) 192
AlwNI CAGNNNCTG 3 cut(s) 257, 394, 845
AoxI GGCC 3 cut(s) 592, 1139, 1194
ApaI GGGCCC 1 cut(s) 1143
ApeKI GCWGC 3 cut(s) 410, 683, 839
ApoI RAATTY 5 cut(s) 131, 347, 452, 916, 938
Asp718I GGTACC 1 cut(s) 172
AspLEI GCGC 1 cut(s) 887
AspS9I GGNCC 5 cut(s) 385, 593, 1139, 1140, 1194
AsuC2I CCSGG 2 cut(s) 149, 425
AsuHPI GGTGA 4 cut(s) 526, 808, 1003, 1126
AsuII TTCGAA 1 cut(s) 921
AsuNHI GCTAGC 1 cut(s) 805
AvaII GGWCC 1 cut(s) 385
BaeGI GKGCMC 1 cut(s) 1143
BanI GGYRCC 1 cut(s) 172
BanII GRGCYC 1 cut(s) 1143
BauI CACGAG 1 cut(s) 575
BbvI GCAGC 3 cut(s) 397, 670, 851
BceAI ACGGC 1 cut(s) 277
BciT130I CCWGG 5 cut(s) 11, 389, 489, 794, 1041
BcnI CCSGG 2 cut(s) 149, 425
BcoDI GTCTC 3 cut(s) 20, 561, 701
BfaI CTAG 2 cut(s) 606, 806
BfoI RGCGCY 1 cut(s) 888
BfrI CTTAAG 1 cut(s) 653
BfuAI ACCTGC 1 cut(s) 494
BisI GCNGC 4 cut(s) 411, 414, 684, 840
BlsI GCNGC 4 cut(s) 412, 415, 685, 841
Bme1390I CCNGG 7 cut(s) 11, 149, 389, 425, 489, 794, 1041
Bme18I GGWCC 1 cut(s) 385
BmgBI CACGTC 1 cut(s) 108
BmgT120I GGNCC 5 cut(s) 385, 593, 1139, 1140, 1194
BmiI GGNNCC 3 cut(s) 174, 369, 1141
BmrFI CCNGG 7 cut(s) 11, 149, 389, 425, 489, 794, 1041
BmsI GCATC 1 cut(s) 946
BmtI GCTAGC 1 cut(s) 809
BplI GAGNNNNNCTC 2 cut(s) 1157, 1189
BpmI CTGGAG 4 cut(s) 401, 461, 884, 1023
Bpu10I CCTNAGC 1 cut(s) 678
Bpu14I TTCGAA 1 cut(s) 921
BpuMI CCSGG 2 cut(s) 149, 425
BsaJI CCNNGG 1 cut(s) 10
BsaXI ACNNNNNCTCC 2 cut(s) 454, 484
Bsc4I CCNNNNNNNGG 3 cut(s) 262, 394, 1099
Bse118I RCCGGY 1 cut(s) 746
Bse1I ACTGG 4 cut(s) 240, 859, 1121, 1204
BseBI CCWGG 5 cut(s) 11, 389, 489, 794, 1041
BseDI CCNNGG 1 cut(s) 10
BseGI GGATG 1 cut(s) 1216
BseLI CCNNNNNNNGG 3 cut(s) 262, 394, 1099
BseMII CTCAG 5 cut(s) 97, 113, 218, 363, 692
BseNI ACTGG 4 cut(s) 240, 859, 1121, 1204
BseRI GAGGAG 1 cut(s) 454
BseSI GKGCMC 1 cut(s) 1143
BseXI GCAGC 3 cut(s) 397, 670, 851
BsgI GTGCAG 2 cut(s) 1047, 1092
Bsh1236I CGCG 1 cut(s) 170
BshFI GGCC 3 cut(s) 594, 1141, 1196
BshNI GGYRCC 1 cut(s) 172
BsiSI CCGG 3 cut(s) 148, 425, 747
BslFI GGGAC 2 cut(s) 94, 566
BslI CCNNNNNNNGG 3 cut(s) 262, 394, 1099
BsmAI GTCTC 3 cut(s) 20, 561, 701
BsmFI GGGAC 2 cut(s) 94, 566
BsnI GGCC 3 cut(s) 594, 1141, 1196
Bsp119I TTCGAA 1 cut(s) 921
Bsp120I GGGCCC 1 cut(s) 1139
Bsp1286I GDGCHC 1 cut(s) 1143
Bsp143I GATC 1 cut(s) 197
BspACI CCGC 5 cut(s) 78, 170, 365, 413, 473
BspANI GGCC 3 cut(s) 594, 1141, 1196
BspCNI CTCAG 5 cut(s) 96, 112, 219, 364, 691
BspFNI CGCG 1 cut(s) 170
BspLI GGNNCC 3 cut(s) 174, 369, 1141
BspMI ACCTGC 1 cut(s) 494
BspOI GCTAGC 1 cut(s) 809
BspPI GGATC 1 cut(s) 192
BspQI GCTCTTC 1 cut(s) 869
BspT104I TTCGAA 1 cut(s) 921
BspT107I GGYRCC 1 cut(s) 172
BspTI CTTAAG 1 cut(s) 653
BsrBI CCGCTC 2 cut(s) 80, 475
BsrFI RCCGGY 1 cut(s) 746
BsrI ACTGG 4 cut(s) 240, 859, 1121, 1204
BssAI RCCGGY 1 cut(s) 746
BssECI CCNNGG 1 cut(s) 10
BssMI GATC 1 cut(s) 197
BssSI CACGAG 1 cut(s) 575
Bst2BI CACGAG 1 cut(s) 575
Bst2UI CCWGG 5 cut(s) 11, 389, 489, 794, 1041
Bst4CI ACNGT 2 cut(s) 484, 1070
Bst6I CTCTTC 2 cut(s) 630, 869
BstAFI CTTAAG 1 cut(s) 653
BstAPI GCANNNNNTGC 1 cut(s) 845
BstBI TTCGAA 1 cut(s) 921
BstC8I GCNNGC 2 cut(s) 807, 850
BstDEI CTNAG 6 cut(s) 83, 99, 227, 372, 660, 678
BstF5I GGATG 1 cut(s) 1216
BstFNI CGCG 1 cut(s) 170
BstH2I RGCGCY 1 cut(s) 888
BstHHI GCGC 1 cut(s) 887
BstKTI GATC 1 cut(s) 200
BstMAI GTCTC 3 cut(s) 20, 561, 701
BstMBI GATC 1 cut(s) 197
BstMWI GCNNNNNNNGC 3 cut(s) 683, 845, 893
BstNI CCWGG 5 cut(s) 11, 389, 489, 794, 1041
BstNSI RCATGY 1 cut(s) 818
BstSCI CCNGG 7 cut(s) 9, 147, 387, 423, 487, 792, 1039
BstSLI GKGCMC 1 cut(s) 1143
BstUI CGCG 1 cut(s) 170
BstV1I GCAGC 3 cut(s) 397, 670, 851
BstX2I RGATCY 1 cut(s) 197
BstXI CCANNNNNNTGG 1 cut(s) 1162
BstYI RGATCY 1 cut(s) 197
BsuRI GGCC 3 cut(s) 594, 1141, 1196
BtrI CACGTC 1 cut(s) 108
BtsCI GGATG 1 cut(s) 1216
BtsI GCAGTG 5 cut(s) 90, 624, 843, 987, 1012
BtsIMutI CAGTG 9 cut(s) 90, 462, 624, 843, 852, 987, 1012, 1128, 1197
BveI ACCTGC 1 cut(s) 494
Cac8I GCNNGC 2 cut(s) 807, 850
CaiI CAGNNNCTG 3 cut(s) 257, 394, 845
CfoI GCGC 1 cut(s) 887
Cfr10I RCCGGY 1 cut(s) 746
Cfr13I GGNCC 5 cut(s) 385, 593, 1139, 1140, 1194
CsiI ACCWGGT 1 cut(s) 387
Csp6I GTAC 2 cut(s) 173, 622
CviAII CATG 1 cut(s) 815
CviQI GTAC 2 cut(s) 173, 622
DdeI CTNAG 6 cut(s) 83, 99, 227, 372, 660, 678
DpnI GATC 1 cut(s) 199
DpnII GATC 1 cut(s) 197
DraI TTTAAA 1 cut(s) 544
Eam1104I CTCTTC 2 cut(s) 630, 869
EarI CTCTTC 2 cut(s) 630, 869
Eco24I GRGCYC 1 cut(s) 1143
Eco47I GGWCC 1 cut(s) 385
Eco57I CTGAAG 1 cut(s) 1100
EcoO109I RGGNCCY 3 cut(s) 593, 1139, 1140
EcoRII CCWGG 5 cut(s) 9, 387, 487, 792, 1039
EcoT38I GRGCYC 1 cut(s) 1143
FaeI CATG 1 cut(s) 818
FaiI YATR 9 cut(s) 316, 318, 495, 564, 572, 717, 816, 954, 1214
FaqI GGGAC 2 cut(s) 94, 566
FatI CATG 1 cut(s) 814
FauI CCCGC 1 cut(s) 85
Fnu4HI GCNGC 4 cut(s) 411, 414, 684, 840
FokI GGATG 1 cut(s) 1203
FriOI GRGCYC 1 cut(s) 1143
Fsp4HI GCNGC 4 cut(s) 411, 414, 684, 840
FspBI CTAG 2 cut(s) 606, 806
GlaI GCGC 1 cut(s) 886
GluI GCNGC 4 cut(s) 411, 414, 684, 840
GsuI CTGGAG 4 cut(s) 401, 461, 884, 1023
HaeII RGCGCY 1 cut(s) 888
HaeIII GGCC 3 cut(s) 594, 1141, 1196
HapII CCGG 3 cut(s) 148, 425, 747
HhaI GCGC 1 cut(s) 887
Hin1II CATG 1 cut(s) 818
Hin6I GCGC 1 cut(s) 885
HinP1I GCGC 1 cut(s) 885
HincII GTYRAC 2 cut(s) 66, 430
HindII GTYRAC 2 cut(s) 66, 430
HindIII AAGCTT 3 cut(s) 203, 582, 1157
HinfI GANTC 4 cut(s) 165, 467, 664, 799
HpaI GTTAAC 1 cut(s) 66
HpaII CCGG 3 cut(s) 148, 425, 747
HphI GGTGA 4 cut(s) 526, 808, 1003, 1126
Hpy166II GTNNAC 3 cut(s) 66, 430, 624
Hpy188I TCNGA 5 cut(s) 52, 228, 298, 1049, 1080
Hpy188III TCNNGA 8 cut(s) 371, 436, 457, 478, 668, 706, 725, 831
Hpy8I GTNNAC 3 cut(s) 66, 430, 624
Hpy99I CGWCG 1 cut(s) 298
HpyAV CCTTC 9 cut(s) 148, 298, 511, 529, 584, 701, 979, 992, 1105
HpyCH4III ACNGT 2 cut(s) 484, 1070
HpyCH4IV ACGT 1 cut(s) 107
HpyCH4V TGCA 5 cut(s) 617, 701, 848, 1028, 1073
HpyF10VI GCNNNNNNNGC 3 cut(s) 683, 845, 893
HpyF3I CTNAG 6 cut(s) 83, 99, 227, 372, 660, 678
HpySE526I ACGT 1 cut(s) 107
Hsp92II CATG 1 cut(s) 818
HspAI GCGC 1 cut(s) 885
KpnI GGTACC 1 cut(s) 176
KspAI GTTAAC 1 cut(s) 66
Kzo9I GATC 1 cut(s) 197
LguI GCTCTTC 1 cut(s) 869
LmnI GCTCC 3 cut(s) 14, 480, 824
Lsp1109I GCAGC 3 cut(s) 397, 670, 851
LweI GCATC 1 cut(s) 946
MabI ACCWGGT 1 cut(s) 387
MaeI CTAG 2 cut(s) 606, 806
MaeII ACGT 1 cut(s) 107
MaeIII GTNAC 3 cut(s) 155, 1030, 1057
MalI GATC 1 cut(s) 199
MbiI CCGCTC 2 cut(s) 80, 475
MboI GATC 1 cut(s) 197
MboII GAAGA 4 cut(s) 647, 886, 935, 1093
MfeI CAATTG 1 cut(s) 1221
MflI RGATCY 1 cut(s) 197
MhlI GDGCHC 1 cut(s) 1143
MluCI AATT 9 cut(s) 119, 131, 347, 452, 916, 926, 938, 1085, 1221
MlyI GAGTC 1 cut(s) 461
MmeI TCCRAC 3 cut(s) 30, 276, 766
MseI TTAA 7 cut(s) 38, 65, 399, 543, 654, 1019, 1088
MspCI CTTAAG 1 cut(s) 653
MspI CCGG 3 cut(s) 148, 425, 747
MspR9I CCNGG 7 cut(s) 11, 149, 389, 425, 489, 794, 1041
MunI CAATTG 1 cut(s) 1221
MvaI CCWGG 5 cut(s) 11, 389, 489, 794, 1041
MvnI CGCG 1 cut(s) 170
MwoI GCNNNNNNNGC 3 cut(s) 683, 845, 893
NciI CCSGG 2 cut(s) 149, 425
NdeII GATC 1 cut(s) 197
NheI GCTAGC 1 cut(s) 805
NlaIII CATG 1 cut(s) 818
NlaIV GGNNCC 3 cut(s) 174, 369, 1141
NspI RCATGY 1 cut(s) 818
NspV TTCGAA 1 cut(s) 921
PaqCI CACCTGC 1 cut(s) 494
PciI ACATGT 1 cut(s) 814
PciSI GCTCTTC 1 cut(s) 869
PfeI GAWTC 3 cut(s) 165, 664, 799
PflMI CCANNNNNTGG 1 cut(s) 394
PfoI TCCNGGA 1 cut(s) 147
PkrI GCNGC 4 cut(s) 412, 415, 685, 841
PleI GAGTC 1 cut(s) 461
PpsI GAGTC 1 cut(s) 461
PscI ACATGT 1 cut(s) 814
Psp6I CCWGG 5 cut(s) 9, 387, 487, 792, 1039
PspGI CCWGG 5 cut(s) 9, 387, 487, 792, 1039
PspN4I GGNNCC 3 cut(s) 174, 369, 1141
PspOMI GGGCCC 1 cut(s) 1139
PspPI GGNCC 5 cut(s) 385, 593, 1139, 1140, 1194
PstNI CAGNNNCTG 3 cut(s) 257, 394, 845
PsuI RGATCY 1 cut(s) 197
RsaI GTAC 2 cut(s) 174, 623
RsaNI GTAC 2 cut(s) 173, 622
SapI GCTCTTC 1 cut(s) 869
SaqAI TTAA 7 cut(s) 38, 65, 399, 543, 654, 1019, 1088
SatI GCNGC 4 cut(s) 411, 414, 684, 840
Sau3AI GATC 1 cut(s) 197
Sau96I GGNCC 5 cut(s) 385, 593, 1139, 1140, 1194
SchI GAGTC 1 cut(s) 461
ScrFI CCNGG 7 cut(s) 11, 149, 389, 425, 489, 794, 1041
SduI GDGCHC 1 cut(s) 1143
SexAI ACCWGGT 1 cut(s) 387
SfaNI GCATC 1 cut(s) 946
SfuI TTCGAA 1 cut(s) 921
SinI GGWCC 1 cut(s) 385
SmlI CTYRAG 1 cut(s) 653
SmoI CTYRAG 1 cut(s) 653
Sse9I AATT 9 cut(s) 119, 131, 347, 452, 916, 926, 938, 1085, 1221
SsiI CCGC 5 cut(s) 78, 170, 365, 413, 473
SspMI CTAG 2 cut(s) 606, 806
StyD4I CCNGG 7 cut(s) 9, 147, 387, 423, 487, 792, 1039
TaaI ACNGT 2 cut(s) 484, 1070
TaiI ACGT 1 cut(s) 110
TaqI TCGA 5 cut(s) 185, 351, 705, 900, 921
TasI AATT 9 cut(s) 119, 131, 347, 452, 916, 926, 938, 1085, 1221
TatI WGTACW 1 cut(s) 621
TauI GCSGC 1 cut(s) 416
TfiI GAWTC 3 cut(s) 165, 664, 799
Tru1I TTAA 7 cut(s) 38, 65, 399, 543, 654, 1019, 1088
Tru9I TTAA 7 cut(s) 38, 65, 399, 543, 654, 1019, 1088
TscAI CASTG 9 cut(s) 97, 469, 631, 850, 859, 987, 1012, 1128, 1204
TseI GCWGC 3 cut(s) 410, 683, 839
TspDTI ATGAA 2 cut(s) 17, 317
TspRI CASTG 9 cut(s) 97, 469, 631, 850, 859, 987, 1012, 1128, 1204
Van91I CCANNNNNTGG 1 cut(s) 394
Vha464I CTTAAG 1 cut(s) 653
VpaK11BI GGWCC 1 cut(s) 385
XapI RAATTY 5 cut(s) 131, 347, 452, 916, 938
XceI RCATGY 1 cut(s) 818
XspI CTAG 2 cut(s) 606, 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.