Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001188

Physical Location & Seq

Genomic Coordinates Reverse (-)

2067175 .. 2068982

Gene Structure 1808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1033700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGACACGGTGCCAAGATCTCAGACTGATCGTATCTCACTCATTTGCTCACAACAACAACAACAACAAACCATTTCCCTTTCCCTTTACAAGTTCTTGTGGTTTTTGCAGTGCATCAATGGCGGCTGTAGCTTCAAGTGATTCAGTTTACGTACCATTTGTAAACAAGGCGTGGGTGTACTCAGAGTACGGAAAGTCTGCAGATGTTTTGAACTTCGATCCGGATGTTCCTGTTCCTGAAATAAAGATGCTTGGCTACTTCAAGGACTATGACTCTTCACCCCCTACAGTTCCAGGATATGATGTTGCTGGTGTGGTGGTTAAAGTAGGAAGCCAAGTGACAAAGTTTAAGGTGGGGGATGAAATATATGGGGATCTCAATGAGAAGGCTATCGATAACCCGAAAAAGATCGGATCTTTGGCCGAGTACACTGCTGCAGACGAAAGAGTGTTAGCTCTCAAGCCCAAAAATCTGAGGTTTCGGCTCGAACGAGCTGAATTCTCTGCCGGTAAATCCATCCTTGTTTTGGGAGGCGCTGGGGGAGTTGGAACACATGTTATTCAGCTAGCAAAGCATATGTTTGATGCTTCAAAAGTGGCAGCTACTAACTTCGTAGACCCGCCCGAGAAATTCAATGTGGTTTACGACGCAGTTGGGATGATTCTTGAATCTTCATTGTTGACTGACGGGGCAGTGAAGGCGGTAAAGGCGGGCGGGAAGGTATTGACAATTGTACGTCCAGTAGCGCCACCAGCATTCCTGTTTATGCTGACTTCAACCGGAACTGTATTAGAGAAACTGAAGCCTCACTTGGAGAGTGGGACGGTGAGGCCGGTGCTTGATCCCACCAGCCTGTATCCATTTTCGAAGACTGTTGAAGCATTTGCCTATCTTGAAACCTCCAGAACTACAGGAAAGGTGGTTGTGTATCCCATTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N ADH_zinc_N_2

Protein Analysis

314

Amino Acids

33.8

Weight (kDa)

8.25

Isoelectric Point (pI)

30.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	91 - 155	2.6e-09	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N_2	PF13602	192 - 309	6.3e-14	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23740
fragaria_vesca	FvH4_4g34500 FvH4_6g50700
malus_domestica	MD09G1033200.v1.1 MD09G1033600.v1.1 MD09G1033700.v1.1 MD09G1034000.v1.1 MD13G1092200.v1.1 MD16G1092800.v1.1
prunus_persica	Prupe.1G253500_v2.0.a1 Prupe.3G284300_v2.0.a1 Prupe.3G284400_v2.0.a1 Prupe.3G284700_v2.0.a1 Prupe.3G284800_v2.0.a1 Prupe.3G284900_v2.0.a1
pyrus_communis	pycom111g02680 pycom111g02700 pycom13g08010 pycom16g07920
rosa_chinensis	RchiOBHm_Chr2g0171461 RchiOBHm_Chr2g0171481 RchiOBHm_Chr2g0171491 RchiOBHm_Chr2g0172531 RchiOBHm_Chr4g0443881
rosa_laevigata	RLG00000005881 RLG00000022016 RLG00000022019 RLG00000022020 RLG00000022113 RLG00000023107
rosa_multiflora	Rmu_sc0000912.1_g000009 Rmu_sc0006783.1_g000002 Rmu_sc0006783.1_g000005 Rmu_sc0010179.1_g000003 Rmu_sc0019062.1_g000006
rosa_roxburghii	Rroxscaffold_2G00080590 Rroxscaffold_2G00080610 Rroxscaffold_2G00080630 Rroxscaffold_5G00384440
rosa_rugosa	Rorug02G0554600 Rorug02G0554700 Rorug02G0554800 Rorug04G0348000
rosa_samantha	Rh2AG628800 Rh2AG629000 Rh2BG639300 Rh2BG639500 Rh2BG639600 Rh2CG607900 Rh2CG608100 Rh2CG608200 Rh2CG615900 Rh4DG414600
rosa_wichuraiana	Rw2G052090 Rw2G052100 Rw2G052590 Rw4G035080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	9
AccI	GTMKAC	1 cut(s)	615
AccIII	TCCGGA	1 cut(s)	220
AciI	CCGC	5 cut(s)	122, 620, 701, 710, 714
AclWI	GGATC	4 cut(s)	212, 381, 421, 836
AcoI	YGGCCR	1 cut(s)	420
AcsI	RAATTY	2 cut(s)	497, 629
AcuI	CTGAAG	1 cut(s)	821
AfaI	GTAC	5 cut(s)	153, 179, 188, 428, 735
AfiI	CCNNNNNNNGG	1 cut(s)	526
AflIII	ACRYGT	1 cut(s)	553
AgsI	TTSAA	9 cut(s)	135, 211, 262, 591, 634, 668, 777, 878, 896
AjnI	CCWGG	1 cut(s)	292
AjuI	GAANNNNNNNTTGG	2 cut(s)	794, 826
AluBI	AGCT	5 cut(s)	131, 455, 494, 565, 602
AluI	AGCT	5 cut(s)	131, 455, 494, 565, 602
AlwI	GGATC	4 cut(s)	212, 381, 421, 836
Ama87I	CYCGRG	1 cut(s)	623
Aor13HI	TCCGGA	1 cut(s)	220
AoxI	GGCC	2 cut(s)	420, 830
ApeKI	GCWGC	2 cut(s)	434, 599
ApoI	RAATTY	2 cut(s)	497, 629
AspLEI	GCGC	2 cut(s)	536, 748
AsuHPI	GGTGA	2 cut(s)	270, 838
AsuII	TTCGAA	1 cut(s)	866
AsuNHI	GCTAGC	1 cut(s)	565
AvaI	CYCGRG	1 cut(s)	623
BanI	GGYRCC	1 cut(s)	9
BbsI	GAAGAC	1 cut(s)	875
BbvI	GCAGC	2 cut(s)	421, 611
BccI	CCATC	1 cut(s)	524
BcgI	CGANNNNNNTGC	2 cut(s)	413, 447
BciT130I	CCWGG	1 cut(s)	294
BciVI	GTATCC	2 cut(s)	867, 939
BfaI	CTAG	1 cut(s)	566
BfmI	CTRYAG	5 cut(s)	126, 198, 285, 435, 909
BfoI	RGCGCY	2 cut(s)	537, 749
BfuI	GTATCC	2 cut(s)	867, 939
BglII	AGATCT	1 cut(s)	16
BisI	GCNGC	3 cut(s)	123, 435, 600
BlsI	GCNGC	3 cut(s)	124, 436, 601
Bme1390I	CCNGG	1 cut(s)	294
BmeT110I	CYCGRG	1 cut(s)	623
BmiI	GGNNCC	1 cut(s)	11
BmrFI	CCNGG	1 cut(s)	294
BmsI	GCATC	3 cut(s)	122, 237, 574
BmtI	GCTAGC	1 cut(s)	569
BpiI	GAAGAC	1 cut(s)	875
BpmI	CTGGAG	1 cut(s)	886
Bpu14I	TTCGAA	1 cut(s)	866
BpuEI	CTTGAG	1 cut(s)	443
Bsa29I	ATCGAT	1 cut(s)	393
BsaAI	YACGTR	1 cut(s)	151
BsaWI	WCCGGW	2 cut(s)	220, 779
Bsc4I	CCNNNNNNNGG	1 cut(s)	526
Bse118I	RCCGGY	2 cut(s)	506, 832
Bse1I	ACTGG	1 cut(s)	740
BseAI	TCCGGA	1 cut(s)	220
BseBI	CCWGG	1 cut(s)	294
BseCI	ATCGAT	1 cut(s)	393
BseGI	GGATG	4 cut(s)	229, 364, 516, 663
BseLI	CCNNNNNNNGG	1 cut(s)	526
BseMII	CTCAG	3 cut(s)	34, 195, 464
BseNI	ACTGG	1 cut(s)	740
BseXI	GCAGC	2 cut(s)	421, 611
BseYI	CCCAGC	1 cut(s)	536
BshFI	GGCC	2 cut(s)	422, 832
BshNI	GGYRCC	1 cut(s)	9
BshVI	ATCGAT	1 cut(s)	393
BsiHKCI	CYCGRG	1 cut(s)	623
BsiSI	CCGG	4 cut(s)	221, 507, 780, 833
BslFI	GGGAC	1 cut(s)	835
BslI	CCNNNNNNNGG	1 cut(s)	526
BsmFI	GGGAC	1 cut(s)	835
BsmI	GAATGC	1 cut(s)	755
BsnI	GGCC	2 cut(s)	422, 832
BsoBI	CYCGRG	1 cut(s)	623
Bsp119I	TTCGAA	1 cut(s)	866
Bsp13I	TCCGGA	1 cut(s)	220
Bsp143I	GATC	7 cut(s)	16, 27, 217, 373, 408, 413, 841
BspACI	CCGC	5 cut(s)	122, 620, 701, 710, 714
BspANI	GGCC	2 cut(s)	422, 832
BspCNI	CTCAG	3 cut(s)	33, 194, 465
BspDI	ATCGAT	1 cut(s)	393
BspEI	TCCGGA	1 cut(s)	220
BspLI	GGNNCC	1 cut(s)	11
BspMAI	CTGCAG	2 cut(s)	202, 439
BspOI	GCTAGC	1 cut(s)	569
BspPI	GGATC	4 cut(s)	212, 381, 421, 836
BspT104I	TTCGAA	1 cut(s)	866
BspT107I	GGYRCC	1 cut(s)	9
BsrFI	RCCGGY	2 cut(s)	506, 832
BsrI	ACTGG	1 cut(s)	740
BssAI	RCCGGY	2 cut(s)	506, 832
BssMI	GATC	7 cut(s)	16, 27, 217, 373, 408, 413, 841
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	5 cut(s)	9, 289, 787, 826, 874
Bst6I	CTCTTC	1 cut(s)	280
BstBAI	YACGTR	1 cut(s)	151
BstBI	TTCGAA	1 cut(s)	866
BstC8I	GCNNGC	2 cut(s)	567, 712
BstDEI	CTNAG	3 cut(s)	20, 181, 473
BstF5I	GGATG	4 cut(s)	229, 364, 516, 663
BstH2I	RGCGCY	2 cut(s)	537, 749
BstHHI	GCGC	2 cut(s)	536, 748
BstKTI	GATC	7 cut(s)	19, 30, 220, 376, 411, 416, 844
BstMBI	GATC	7 cut(s)	16, 27, 217, 373, 408, 413, 841
BstMWI	GCNNNNNNNGC	6 cut(s)	119, 128, 571, 698, 707, 752
BstNI	CCWGG	1 cut(s)	294
BstNSI	RCATGY	1 cut(s)	557
BstSCI	CCNGG	1 cut(s)	292
BstSFI	CTRYAG	5 cut(s)	126, 198, 285, 435, 909
BstSNI	TACGTA	1 cut(s)	151
BstV1I	GCAGC	2 cut(s)	421, 611
BstV2I	GAAGAC	1 cut(s)	875
BstX2I	RGATCY	3 cut(s)	16, 373, 413
BstYI	RGATCY	3 cut(s)	16, 373, 413
Bsu15I	ATCGAT	1 cut(s)	393
BsuI	GTATCC	2 cut(s)	867, 939
BsuRI	GGCC	2 cut(s)	422, 832
BsuTUI	ATCGAT	1 cut(s)	393
BtsCI	GGATG	4 cut(s)	229, 364, 516, 663
BtsI	GCAGTG	3 cut(s)	115, 429, 699
BtsIMutI	CAGTG	3 cut(s)	115, 429, 699
Cac8I	GCNNGC	2 cut(s)	567, 712
CfoI	GCGC	2 cut(s)	536, 748
Cfr10I	RCCGGY	2 cut(s)	506, 832
ClaI	ATCGAT	1 cut(s)	393
CseI	GACGC	1 cut(s)	656
Csp6I	GTAC	5 cut(s)	152, 178, 187, 427, 734
CviAII	CATG	2 cut(s)	554, 939
CviQI	GTAC	5 cut(s)	152, 178, 187, 427, 734
DdeI	CTNAG	3 cut(s)	20, 181, 473
DpnI	GATC	7 cut(s)	18, 29, 219, 375, 410, 415, 843
DpnII	GATC	7 cut(s)	16, 27, 217, 373, 408, 413, 841
EaeI	YGGCCR	1 cut(s)	420
Eam1104I	CTCTTC	1 cut(s)	280
EarI	CTCTTC	1 cut(s)	280
Eco105I	TACGTA	1 cut(s)	151
Eco57I	CTGAAG	1 cut(s)	821
Eco88I	CYCGRG	1 cut(s)	623
EcoRI	GAATTC	1 cut(s)	497
EcoRII	CCWGG	1 cut(s)	292
FaeI	CATG	2 cut(s)	557, 942
FaiI	YATR	9 cut(s)	270, 300, 367, 369, 555, 576, 578, 767, 940
FalI	AAGNNNNNCTT	2 cut(s)	794, 826
FaqI	GGGAC	1 cut(s)	835
FatI	CATG	2 cut(s)	553, 938
FauI	CCCGC	3 cut(s)	627, 703, 707
FauNDI	CATATG	1 cut(s)	576
FblI	GTMKAC	1 cut(s)	615
Fnu4HI	GCNGC	3 cut(s)	123, 435, 600
FokI	GGATG	4 cut(s)	236, 371, 503, 670
Fsp4HI	GCNGC	3 cut(s)	123, 435, 600
FspBI	CTAG	1 cut(s)	566
GlaI	GCGC	2 cut(s)	535, 747
GluI	GCNGC	3 cut(s)	123, 435, 600
GsaI	CCCAGC	1 cut(s)	540
GsuI	CTGGAG	1 cut(s)	886
HaeII	RGCGCY	2 cut(s)	537, 749
HaeIII	GGCC	2 cut(s)	422, 832
HapII	CCGG	4 cut(s)	221, 507, 780, 833
HgaI	GACGC	1 cut(s)	656
HhaI	GCGC	2 cut(s)	536, 748
Hin1II	CATG	2 cut(s)	557, 942
Hin6I	GCGC	2 cut(s)	534, 746
HinP1I	GCGC	2 cut(s)	534, 746
HincII	GTYRAC	1 cut(s)	681
HindII	GTYRAC	1 cut(s)	681
HinfI	GANTC	4 cut(s)	140, 272, 661, 668
HpaII	CCGG	4 cut(s)	221, 507, 780, 833
HphI	GGTGA	2 cut(s)	270, 838
Hpy166II	GTNNAC	7 cut(s)	148, 163, 178, 429, 616, 643, 681
Hpy188I	TCNGA	4 cut(s)	23, 184, 413, 474
Hpy188III	TCNNGA	5 cut(s)	221, 236, 665, 893, 903
Hpy8I	GTNNAC	7 cut(s)	148, 163, 178, 429, 616, 643, 681
Hpy99I	CGWCG	1 cut(s)	650
HpyAV	CCTTC	3 cut(s)	379, 691, 712
HpyCH4III	ACNGT	5 cut(s)	9, 289, 787, 826, 874
HpyCH4IV	ACGT	2 cut(s)	150, 736
HpyCH4V	TGCA	4 cut(s)	108, 113, 200, 437
HpyF10VI	GCNNNNNNNGC	6 cut(s)	119, 128, 571, 698, 707, 752
HpyF3I	CTNAG	3 cut(s)	20, 181, 473
HpySE526I	ACGT	2 cut(s)	150, 736
Hsp92II	CATG	2 cut(s)	557, 942
HspAI	GCGC	2 cut(s)	534, 746
Kpn2I	TCCGGA	1 cut(s)	220
Kzo9I	GATC	7 cut(s)	16, 27, 217, 373, 408, 413, 841
Lsp1109I	GCAGC	2 cut(s)	421, 611
LweI	GCATC	3 cut(s)	122, 237, 574
MaeI	CTAG	1 cut(s)	566
MaeII	ACGT	2 cut(s)	150, 736
MaeIII	GTNAC	1 cut(s)	337
MalI	GATC	7 cut(s)	18, 29, 219, 375, 410, 415, 843
MboI	GATC	7 cut(s)	16, 27, 217, 373, 408, 413, 841
MboII	GAAGA	3 cut(s)	267, 663, 880
MfeI	CAATTG	1 cut(s)	729
MflI	RGATCY	3 cut(s)	16, 373, 413
MluCI	AATT	3 cut(s)	497, 629, 729
MlyI	GAGTC	1 cut(s)	266
MmeI	TCCRAC	1 cut(s)	526
MnlI	CCTC	5 cut(s)	468, 524, 816, 822, 910
MroI	TCCGGA	1 cut(s)	220
MseI	TTAA	2 cut(s)	321, 348
MspI	CCGG	4 cut(s)	221, 507, 780, 833
MspR9I	CCNGG	1 cut(s)	294
MunI	CAATTG	1 cut(s)	729
Mva1269I	GAATGC	1 cut(s)	755
MvaI	CCWGG	1 cut(s)	294
MwoI	GCNNNNNNNGC	6 cut(s)	119, 128, 571, 698, 707, 752
NdeI	CATATG	1 cut(s)	576
NdeII	GATC	7 cut(s)	16, 27, 217, 373, 408, 413, 841
NheI	GCTAGC	1 cut(s)	565
NlaIII	CATG	2 cut(s)	557, 942
NlaIV	GGNNCC	1 cut(s)	11
NmeAIII	GCCGAG	1 cut(s)	448
NmuCI	GTSAC	1 cut(s)	337
NspI	RCATGY	1 cut(s)	557
NspV	TTCGAA	1 cut(s)	866
PciI	ACATGT	1 cut(s)	553
PcsI	WCGNNNNNNNCGW	1 cut(s)	487
PctI	GAATGC	1 cut(s)	755
PfeI	GAWTC	3 cut(s)	140, 661, 668
PfoI	TCCNGGA	1 cut(s)	292
PkrI	GCNGC	3 cut(s)	124, 436, 601
PleI	GAGTC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	266
Ppu21I	YACGTR	1 cut(s)	151
PscI	ACATGT	1 cut(s)	553
Psp6I	CCWGG	1 cut(s)	292
PspFI	CCCAGC	1 cut(s)	536
PspGI	CCWGG	1 cut(s)	292
PspN4I	GGNNCC	1 cut(s)	11
PstI	CTGCAG	2 cut(s)	202, 439
PsuI	RGATCY	3 cut(s)	16, 373, 413
RsaI	GTAC	5 cut(s)	153, 179, 188, 428, 735
RsaNI	GTAC	5 cut(s)	152, 178, 187, 427, 734
SaqAI	TTAA	2 cut(s)	321, 348
SatI	GCNGC	3 cut(s)	123, 435, 600
Sau3AI	GATC	7 cut(s)	16, 27, 217, 373, 408, 413, 841
SchI	GAGTC	1 cut(s)	266
ScrFI	CCNGG	1 cut(s)	294
SfaNI	GCATC	3 cut(s)	122, 237, 574
SfcI	CTRYAG	5 cut(s)	126, 198, 285, 435, 909
SfuI	TTCGAA	1 cut(s)	866
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
SnaBI	TACGTA	1 cut(s)	151
Sse9I	AATT	3 cut(s)	497, 629, 729
SsiI	CCGC	5 cut(s)	122, 620, 701, 710, 714
SspMI	CTAG	1 cut(s)	566
StyD4I	CCNGG	1 cut(s)	292
TaaI	ACNGT	5 cut(s)	9, 289, 787, 826, 874
TaiI	ACGT	2 cut(s)	153, 739
TaqI	TCGA	4 cut(s)	216, 393, 486, 866
TasI	AATT	3 cut(s)	497, 629, 729
TatI	WGTACW	2 cut(s)	177, 426
TauI	GCSGC	1 cut(s)	125
TfiI	GAWTC	3 cut(s)	140, 661, 668
Tru1I	TTAA	2 cut(s)	321, 348
Tru9I	TTAA	2 cut(s)	321, 348
TscAI	CASTG	3 cut(s)	115, 436, 699
TseFI	GTSAC	1 cut(s)	337
TseI	GCWGC	2 cut(s)	434, 599
Tsp45I	GTSAC	1 cut(s)	337
TspDTI	ATGAA	2 cut(s)	375, 663
TspGWI	ACGGA	1 cut(s)	204
TspRI	CASTG	3 cut(s)	115, 436, 699
XapI	RAATTY	2 cut(s)	497, 629
XceI	RCATGY	1 cut(s)	557
XcmI	CCANNNNNNNNNTGG	1 cut(s)	523
XmiI	GTMKAC	1 cut(s)	615
XspI	CTAG	1 cut(s)	566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.