Rmu_sc0006783.1_g000005

2-methylene-furan-3-one reductase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006783.1
OG0001188
Physical Location & Seq
Forward (+)
19561 .. 22523
2963 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006783.1_g000005.1.cds

Sequence Viewer

Length: 1332 bp
atgcaaatatatgtgaccacacagcaaccacatagatggaacacacttataattcatcagcaagcgcccctgcgcacgctactgcttgtccacacgcccgcgcgcctgcagccctgctgcctgcgcgcccttgcgtccgcagctgcctgcttgcgtgcccgtgcacctgcagcattgaatcaagctgctagcctgcagctgctcctgcagccctctcggccctgcctcctcctgcatccttcggcagcaactaaaatccttaactgccatcaccaccgcagccactgctgccccgcatccgctgcacgcctctacttagattacttcgctccatcacgcctgcatcgacacgcgcgtgatccaaaaccaacaactccaagtgactccataccctctctaatgggggcttgggtctattcagagtatggaaaaacttctgatgttctgaagtttgatccaagtgtggctgttcctgaaattaaagaggatcaggtgctgatcaaggtggttgctgcctctcttaacccagttgatttcaaaagggctcatggttacttcaaggacactgactctccactacctacagttccagggtatgatgtggctggtgtggtggtgaaggtaggaagccaagtaacgaagtttaaggtgggggatgaagtatatggggatctcaatgagacagcattggtaaacccaaaaaggtttgggtctttggcacagtacactgctgcagaagaaagaatattggctcacaaacccaaaaacctaagctttattgaagctgctagccttcccttagccattgagacagcctatgaagggcttgaaagagccgaactttctgctggtaaatccatccttgttttgggaggcgctgggggtgtgggaacacatattattcagctggcaaagcatgtgtttggtgcttccaaagtggcagctactgcaagcactaggaaactggatttgttgagaagcttgggtgctgatttgcctatcgattacaccaaggtgaacattgaagacctgccagagaaatttgatgtagtgtatgatgcagttggggagactgacaaggctgtaaaggcggtgaaagaaggcgggaagatagtaacaatagtaggtccagcaacgccaccagctatcatatttgtgcttacctctagagggtctatcttggagaaactgaagccttacttggagggtgggaaggtgaagccagtgcttgatcccacaggtccatatcccttttctaaagttgtggaagcatttggttaccttgagagttccagagctacaggaaaggtggttgtatatcccatcccatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N ADH_zinc_N ADH_zinc_N_2

Protein Analysis

443

Amino Acids

47.78

Weight (kDa)

9.1

Isoelectric Point (pI)

38.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 50
AarI CACCTGC 1 cut(s) 175
Acc16I TGCGCA 1 cut(s) 74
Acc36I ACCTGC 2 cut(s) 175, 1038
AccII CGCG 5 cut(s) 101, 103, 126, 353, 355
AciI CCGC 7 cut(s) 99, 138, 277, 294, 300, 1091, 1104
AclWI GGATC 5 cut(s) 353, 449, 495, 678, 1226
AcsI RAATTY 1 cut(s) 1040
AcuI CTGAAG 2 cut(s) 467, 1211
AfaI GTAC 1 cut(s) 725
AfiI CCNNNNNNNGG 3 cut(s) 822, 868, 1170
AgsI TTSAA 6 cut(s) 178, 538, 559, 782, 830, 1025
AjnI CCWGG 1 cut(s) 589
AjuI GAANNNNNNNTTGG 2 cut(s) 1184, 1216
AleI CACNNNNGTG 2 cut(s) 354, 1013
Alw21I GWGCWC 1 cut(s) 166
Alw26I GTCTC 3 cut(s) 674, 803, 1064
Alw44I GTGCAC 1 cut(s) 162
AlwI GGATC 5 cut(s) 353, 449, 495, 678, 1226
AlwNI CAGNNNCTG 3 cut(s) 285, 496, 947
AoxI GGCC 1 cut(s) 218
ApaLI GTGCAC 1 cut(s) 162
ApoI RAATTY 1 cut(s) 1040
Asp700I GAANNNNTTC 1 cut(s) 433
AspLEI GCGC 8 cut(s) 67, 75, 103, 105, 126, 128, 355, 878
AspS9I GGNCC 3 cut(s) 219, 1127, 1241
AsuHPI GGTGA 5 cut(s) 263, 628, 1027, 1105, 1228
AsuNHI GCTAGC 2 cut(s) 188, 788
AvaII GGWCC 2 cut(s) 1127, 1241
BaeGI GKGCMC 2 cut(s) 160, 166
BanII GRGCYC 1 cut(s) 547
BbsI GAAGAC 1 cut(s) 1032
Bbv12I GWGCWC 1 cut(s) 166
BccI CCATC 5 cut(s) 30, 276, 340, 866, 1331
BcgI CGANNNNNNTGC 4 cut(s) 197, 231, 827, 861
BciT130I CCWGG 1 cut(s) 591
BclI TGATCA 1 cut(s) 498
BcoDI GTCTC 3 cut(s) 674, 803, 1064
BfaI CTAG 4 cut(s) 189, 789, 957, 1167
BfmI CTRYAG 7 cut(s) 107, 168, 194, 206, 582, 732, 1299
BfoI RGCGCY 2 cut(s) 68, 879
BfuAI ACCTGC 2 cut(s) 175, 1038
BglI GCCNNNNNGGC 1 cut(s) 217
Bme1390I CCNGG 1 cut(s) 591
Bme18I GGWCC 2 cut(s) 1127, 1241
BmgT120I GGNCC 3 cut(s) 219, 1127, 1241
BmrFI CCNGG 1 cut(s) 591
BmrI ACTGGG 1 cut(s) 521
BmsI GCATC 4 cut(s) 244, 305, 352, 1048
BmtI GCTAGC 2 cut(s) 192, 792
BmuI ACTGGG 1 cut(s) 521
BpiI GAAGAC 1 cut(s) 1032
Bpu10I CCTNAGC 2 cut(s) 770, 799
BpuEI CTTGAG 1 cut(s) 1304
Bsa29I ATCGAT 1 cut(s) 1002
BsaJI CCNNGG 2 cut(s) 590, 1011
BsaXI ACNNNNNCTCC 2 cut(s) 556, 586
Bsc4I CCNNNNNNNGG 3 cut(s) 822, 868, 1170
Bse1I ACTGG 3 cut(s) 527, 969, 1223
BseBI CCWGG 1 cut(s) 591
BseCI ATCGAT 1 cut(s) 1002
BseDI CCNNGG 2 cut(s) 590, 1011
BseGI GGATG 5 cut(s) 235, 296, 661, 858, 1323
BseLI CCNNNNNNNGG 3 cut(s) 822, 868, 1170
BseNI ACTGG 3 cut(s) 527, 969, 1223
BsePI GCGCGC 2 cut(s) 101, 124
BseRI GAGGAG 1 cut(s) 218
BseSI GKGCMC 2 cut(s) 160, 166
BseYI CCCAGC 1 cut(s) 878
BsgI GTGCAG 1 cut(s) 288
Bsh1236I CGCG 5 cut(s) 101, 103, 126, 353, 355
BshFI GGCC 1 cut(s) 220
BshVI ATCGAT 1 cut(s) 1002
BsiHKAI GWGCWC 1 cut(s) 166
BslI CCNNNNNNNGG 3 cut(s) 822, 868, 1170
BsmAI GTCTC 3 cut(s) 674, 803, 1064
BsnI GGCC 1 cut(s) 220
Bsp1286I GDGCHC 3 cut(s) 160, 166, 547
Bsp143I GATC 6 cut(s) 358, 454, 487, 498, 670, 1231
BspACI CCGC 7 cut(s) 99, 138, 277, 294, 300, 1091, 1104
BspANI GGCC 1 cut(s) 220
BspDI ATCGAT 1 cut(s) 1002
BspFNI CGCG 5 cut(s) 101, 103, 126, 353, 355
BspMAI CTGCAG 5 cut(s) 111, 172, 198, 210, 736
BspMI ACCTGC 2 cut(s) 175, 1038
BspOI GCTAGC 2 cut(s) 192, 792
BspPI GGATC 5 cut(s) 353, 449, 495, 678, 1226
BsrI ACTGG 3 cut(s) 527, 969, 1223
BssECI CCNNGG 2 cut(s) 590, 1011
BssHII GCGCGC 2 cut(s) 101, 124
BssMI GATC 6 cut(s) 358, 454, 487, 498, 670, 1231
BssT1I CCWWGG 1 cut(s) 1011
Bst2UI CCWGG 1 cut(s) 591
Bst4CI ACNGT 2 cut(s) 586, 723
BstAPI GCANNNNNTGC 3 cut(s) 285, 302, 947
BstDEI CTNAG 3 cut(s) 316, 770, 799
BstEII GGTNACC 1 cut(s) 1277
BstF5I GGATG 5 cut(s) 235, 296, 661, 858, 1323
BstFNI CGCG 5 cut(s) 101, 103, 126, 353, 355
BstH2I RGCGCY 2 cut(s) 68, 879
BstHHI GCGC 8 cut(s) 67, 75, 103, 105, 126, 128, 355, 878
BstKTI GATC 6 cut(s) 361, 457, 490, 501, 673, 1234
BstMAI GTCTC 3 cut(s) 674, 803, 1064
BstMBI GATC 6 cut(s) 358, 454, 487, 498, 670, 1231
BstNI CCWGG 1 cut(s) 591
BstNSI RCATGY 1 cut(s) 920
BstPI GGTNACC 1 cut(s) 1277
BstSCI CCNGG 1 cut(s) 589
BstSFI CTRYAG 7 cut(s) 107, 168, 194, 206, 582, 732, 1299
BstSLI GKGCMC 2 cut(s) 160, 166
BstUI CGCG 5 cut(s) 101, 103, 126, 353, 355
BstV2I GAAGAC 1 cut(s) 1032
BstX2I RGATCY 1 cut(s) 670
BstXI CCANNNNNNTGG 1 cut(s) 36
BstYI RGATCY 1 cut(s) 670
Bsu15I ATCGAT 1 cut(s) 1002
BsuRI GGCC 1 cut(s) 220
BsuTUI ATCGAT 1 cut(s) 1002
BtsCI GGATG 5 cut(s) 235, 296, 661, 858, 1323
BtsI GCAGTG 2 cut(s) 283, 726
BtsIMutI CAGTG 4 cut(s) 283, 564, 726, 1230
BveI ACCTGC 2 cut(s) 175, 1038
CaiI CAGNNNCTG 3 cut(s) 285, 496, 947
CfoI GCGC 8 cut(s) 67, 75, 103, 105, 126, 128, 355, 878
Cfr13I GGNCC 3 cut(s) 219, 1127, 1241
ClaI ATCGAT 1 cut(s) 1002
CseI GACGC 1 cut(s) 123
Csp6I GTAC 1 cut(s) 724
CviAII CATG 3 cut(s) 548, 917, 1329
CviQI GTAC 1 cut(s) 724
DdeI CTNAG 3 cut(s) 316, 770, 799
DpnI GATC 6 cut(s) 360, 456, 489, 500, 672, 1233
DpnII GATC 6 cut(s) 358, 454, 487, 498, 670, 1231
Eco130I CCWWGG 1 cut(s) 1011
Eco24I GRGCYC 1 cut(s) 547
Eco47I GGWCC 2 cut(s) 1127, 1241
Eco57I CTGAAG 2 cut(s) 467, 1211
Eco91I GGTNACC 1 cut(s) 1277
EcoO65I GGTNACC 1 cut(s) 1277
EcoRII CCWGG 1 cut(s) 589
EcoT14I CCWWGG 1 cut(s) 1011
EcoT38I GRGCYC 1 cut(s) 547
ErhI CCWWGG 1 cut(s) 1011
FaeI CATG 3 cut(s) 551, 920, 1332
FalI AAGNNNNNCTT 2 cut(s) 1184, 1216
FatI CATG 3 cut(s) 547, 916, 1328
FauI CCCGC 3 cut(s) 106, 301, 1097
FbaI TGATCA 1 cut(s) 498
FokI GGATG 5 cut(s) 222, 283, 668, 845, 1310
FriOI GRGCYC 1 cut(s) 547
FspBI CTAG 4 cut(s) 189, 789, 957, 1167
FspI TGCGCA 1 cut(s) 74
GlaI GCGC 8 cut(s) 66, 74, 102, 104, 125, 127, 354, 877
GsaI CCCAGC 1 cut(s) 882
HaeII RGCGCY 2 cut(s) 68, 879
HaeIII GGCC 1 cut(s) 220
HgaI GACGC 1 cut(s) 123
HhaI GCGC 8 cut(s) 67, 75, 103, 105, 126, 128, 355, 878
Hin1II CATG 3 cut(s) 551, 920, 1332
Hin6I GCGC 8 cut(s) 65, 73, 101, 103, 124, 126, 353, 876
HinP1I GCGC 8 cut(s) 65, 73, 101, 103, 124, 126, 353, 876
HindIII AAGCTT 2 cut(s) 772, 979
HinfI GANTC 3 cut(s) 178, 383, 569
HphI GGTGA 5 cut(s) 263, 628, 1027, 1105, 1228
Hpy166II GTNNAC 5 cut(s) 91, 164, 694, 726, 1018
Hpy188I TCNGA 3 cut(s) 421, 439, 447
Hpy188III TCNNGA 3 cut(s) 473, 1167, 1293
Hpy8I GTNNAC 5 cut(s) 91, 164, 694, 726, 1018
HpyAV CCTTC 6 cut(s) 249, 613, 803, 815, 1094, 1207
HpyCH4III ACNGT 2 cut(s) 586, 723
HpyF3I CTNAG 3 cut(s) 316, 770, 799
Hsp92II CATG 3 cut(s) 551, 920, 1332
HspAI GCGC 8 cut(s) 65, 73, 101, 103, 124, 126, 353, 876
Ksp22I TGATCA 1 cut(s) 498
Kzo9I GATC 6 cut(s) 358, 454, 487, 498, 670, 1231
LmnI GCTCC 2 cut(s) 207, 334
LweI GCATC 4 cut(s) 244, 305, 352, 1048
MaeI CTAG 4 cut(s) 189, 789, 957, 1167
MaeIII GTNAC 6 cut(s) 13, 380, 551, 634, 1114, 1277
MalI GATC 6 cut(s) 360, 456, 489, 500, 672, 1233
MboI GATC 6 cut(s) 358, 454, 487, 498, 670, 1231
MboII GAAGA 3 cut(s) 749, 1037, 1120
MflI RGATCY 1 cut(s) 670
MhlI GDGCHC 3 cut(s) 160, 166, 547
MluCI AATT 3 cut(s) 51, 477, 1040
MlyI GAGTC 2 cut(s) 377, 563
MroXI GAANNNNTTC 1 cut(s) 433
MseI TTAA 4 cut(s) 261, 480, 522, 645
MslI CAYNNNNRTG 4 cut(s) 34, 354, 1013, 1154
MspA1I CMGCKG 4 cut(s) 143, 199, 302, 907
MspR9I CCNGG 1 cut(s) 591
MvaI CCWGG 1 cut(s) 591
MvnI CGCG 5 cut(s) 101, 103, 126, 353, 355
NdeII GATC 6 cut(s) 358, 454, 487, 498, 670, 1231
NheI GCTAGC 2 cut(s) 188, 788
NlaIII CATG 3 cut(s) 551, 920, 1332
NmeAIII GCCGAG 1 cut(s) 196
NmuCI GTSAC 2 cut(s) 13, 380
NsbI TGCGCA 1 cut(s) 74
NspI RCATGY 1 cut(s) 920
OliI CACNNNNGTG 2 cut(s) 354, 1013
PaqCI CACCTGC 1 cut(s) 175
PauI GCGCGC 2 cut(s) 101, 124
PcsI WCGNNNNNNNCGW 2 cut(s) 343, 352
PdmI GAANNNNTTC 1 cut(s) 433
PfeI GAWTC 1 cut(s) 178
PleI GAGTC 2 cut(s) 377, 563
PpsI GAGTC 2 cut(s) 377, 563
PsiI TTATAA 1 cut(s) 50
Psp6I CCWGG 1 cut(s) 589
PspEI GGTNACC 1 cut(s) 1277
PspFI CCCAGC 1 cut(s) 878
PspGI CCWGG 1 cut(s) 589
PspPI GGNCC 3 cut(s) 219, 1127, 1241
PstI CTGCAG 5 cut(s) 111, 172, 198, 210, 736
PstNI CAGNNNCTG 3 cut(s) 285, 496, 947
PsuI RGATCY 1 cut(s) 670
PteI GCGCGC 2 cut(s) 101, 124
PvuII CAGCTG 3 cut(s) 143, 199, 907
RsaI GTAC 1 cut(s) 725
RsaNI GTAC 1 cut(s) 724
RseI CAYNNNNRTG 4 cut(s) 34, 354, 1013, 1154
SaqAI TTAA 4 cut(s) 261, 480, 522, 645
Sau3AI GATC 6 cut(s) 358, 454, 487, 498, 670, 1231
Sau96I GGNCC 3 cut(s) 219, 1127, 1241
SchI GAGTC 2 cut(s) 377, 563
ScrFI CCNGG 1 cut(s) 591
SduI GDGCHC 3 cut(s) 160, 166, 547
SfaNI GCATC 4 cut(s) 244, 305, 352, 1048
SfcI CTRYAG 7 cut(s) 107, 168, 194, 206, 582, 732, 1299
SinI GGWCC 2 cut(s) 1127, 1241
SmiMI CAYNNNNRTG 4 cut(s) 34, 354, 1013, 1154
SmlI CTYRAG 1 cut(s) 1283
SmoI CTYRAG 1 cut(s) 1283
Sse9I AATT 3 cut(s) 51, 477, 1040
SsiI CCGC 7 cut(s) 99, 138, 277, 294, 300, 1091, 1104
SspI AATATT 1 cut(s) 747
SspMI CTAG 4 cut(s) 189, 789, 957, 1167
StyD4I CCNGG 1 cut(s) 589
StyI CCWWGG 1 cut(s) 1011
TaaI ACNGT 2 cut(s) 586, 723
TaqI TCGA 2 cut(s) 346, 1002
TasI AATT 3 cut(s) 51, 477, 1040
TatI WGTACW 1 cut(s) 723
TfiI GAWTC 1 cut(s) 178
Tru1I TTAA 4 cut(s) 261, 480, 522, 645
Tru9I TTAA 4 cut(s) 261, 480, 522, 645
TscAI CASTG 4 cut(s) 290, 571, 733, 1230
TseFI GTSAC 2 cut(s) 13, 380
Tsp45I GTSAC 2 cut(s) 13, 380
TspDTI ATGAA 3 cut(s) 44, 672, 834
TspRI CASTG 4 cut(s) 290, 571, 733, 1230
VneI GTGCAC 1 cut(s) 162
VpaK11BI GGWCC 2 cut(s) 1127, 1241
XapI RAATTY 1 cut(s) 1040
XbaI TCTAGA 1 cut(s) 1166
XceI RCATGY 1 cut(s) 920
XcmI CCANNNNNNNNNTGG 1 cut(s) 865
XmnI GAANNNNTTC 1 cut(s) 433
XspI CTAG 4 cut(s) 189, 789, 957, 1167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.