Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001188

Physical Location & Seq

Genomic Coordinates Forward (+)

85913506 .. 85916551

Gene Structure 3046 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG639500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGCTGCACCTCCAAGTGATTCCATACCCTCTGTAATGGGGGCTTGGGTCTATTCAGAGTATGGAAAAACTTCTGATGTTCTCAAGTTTGATCCGAGTGTGGCTGTTCCTGAAATTAAAGAGGATCAGGTGCTGATCAAGGTGGTTGCTGCCTCTCTCAACCCAGTTGATTTCAAAAGGGCTCTTGGTTACTTCAAGGACACCGACTCTCCCCTACCTACAGTTCCAGGGTATGATGTGGCTGGTGTGGTGGTGAAGGTAGGAAGCCAAGTAACGAAGTTTAAGGTGGGGGATGAAGTATATGGGGATCTCAATGAGACAGCATTGGTGAACCCAAAAAGGTTTGGGTCTTTGGCACAGTACACTGCTGCAGAAGAAAGAGTATTGGCTCAAAAACCCAAAAACCTGAGCTTTATTGAAGCTGCTAGCCTTCCCTTAGCCATTGAGACTGCCTATGAAGGGCTTGAAAGAGCCGAACTTTCTGTTGGTAAATCCATCCTTGTTTTGGGAGGCGCTGGGGGTGTGGGAACACATATTATTCAGCTGGCAAAGCATGTTTTTGGTGCTTCCAAAGTGGCAGCTACTGCAAGCACCAAGAAACTGGATTTGTTGAGAAGCTTGGGTGCTGATTTGCCTATCGATTACACCAAGAACACTTTAGTGACTGATGTTATATATTGTAATTGCAAAACAAAAACAGGGGAGACTGACAAGGCTGTAAAGGCGGTGAAAGAAGGCGGGAAGGTAGTAACAATAGTAGGTCCAGCAACGCCACCAGCTATCATATTTCTGCTTACCTCTAGAGGGTCTATCTTGGAGAAACTGAAGCCTTACTTGGAGGGTGGGAAGGTGAAGCCAGTGCTTGATCCCACAGGTCCATATCCCTTTTCTAAAGTTGTGGAAGCATTTGGTTACCTTGAGAGTTCCAGAGCTACAGGAAAGGTGGTTGTATATCCCATCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N ADH_zinc_N_2

Protein Analysis

321

Amino Acids

34.0

Weight (kDa)

8.56

Isoelectric Point (pI)

22.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	41 - 133	6.3e-17	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	174 - 253	3.4e-07	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	207 - 317	2.1e-13	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23740
fragaria_vesca	FvH4_4g34500 FvH4_6g50700
malus_domestica	MD09G1033200.v1.1 MD09G1033600.v1.1 MD09G1033700.v1.1 MD09G1034000.v1.1 MD13G1092200.v1.1 MD16G1092800.v1.1
prunus_persica	Prupe.1G253500_v2.0.a1 Prupe.3G284300_v2.0.a1 Prupe.3G284400_v2.0.a1 Prupe.3G284700_v2.0.a1 Prupe.3G284800_v2.0.a1 Prupe.3G284900_v2.0.a1
pyrus_communis	pycom111g02680 pycom111g02700 pycom13g08010 pycom16g07920
rosa_chinensis	RchiOBHm_Chr2g0171461 RchiOBHm_Chr2g0171481 RchiOBHm_Chr2g0171491 RchiOBHm_Chr2g0172531 RchiOBHm_Chr4g0443881
rosa_laevigata	RLG00000005881 RLG00000022016 RLG00000022019 RLG00000022020 RLG00000022113 RLG00000023107
rosa_multiflora	Rmu_sc0000912.1_g000009 Rmu_sc0006783.1_g000002 Rmu_sc0006783.1_g000005 Rmu_sc0010179.1_g000003 Rmu_sc0019062.1_g000006
rosa_roxburghii	Rroxscaffold_2G00080590 Rroxscaffold_2G00080610 Rroxscaffold_2G00080630 Rroxscaffold_5G00384440
rosa_rugosa	Rorug02G0554600 Rorug02G0554700 Rorug02G0554800 Rorug04G0348000
rosa_samantha	Rh2AG628800 Rh2AG629000 Rh2BG639300 Rh2BG639500 Rh2BG639600 Rh2CG607900 Rh2CG608100 Rh2CG608200 Rh2CG615900 Rh4DG414600
rosa_wichuraiana	Rw2G052090 Rw2G052100 Rw2G052590 Rw4G035080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	725, 738
AclWI	GGATC	4 cut(s)	86, 132, 315, 860
AcuI	CTGAAG	1 cut(s)	845
AfaI	GTAC	1 cut(s)	362
AfiI	CCNNNNNNNGG	3 cut(s)	459, 505, 804
AgsI	TTSAA	4 cut(s)	175, 196, 419, 467
AjnI	CCWGG	1 cut(s)	226
AjuI	GAANNNNNNNTTGG	4 cut(s)	468, 500, 818, 850
AleI	CACNNNNGTG	1 cut(s)	659
AluBI	AGCT	7 cut(s)	411, 422, 544, 581, 618, 779, 932
AluI	AGCT	7 cut(s)	411, 422, 544, 581, 618, 779, 932
Alw26I	GTCTC	3 cut(s)	311, 440, 698
AlwI	GGATC	4 cut(s)	86, 132, 315, 860
AlwNI	CAGNNNCTG	2 cut(s)	133, 584
ApeKI	GCWGC	5 cut(s)	5, 149, 368, 422, 578
Asp700I	GAANNNNTTC	1 cut(s)	70
AspLEI	GCGC	1 cut(s)	515
AspS9I	GGNCC	2 cut(s)	761, 875
AsuHPI	GGTGA	4 cut(s)	265, 340, 739, 862
AsuNHI	GCTAGC	1 cut(s)	425
AvaII	GGWCC	2 cut(s)	761, 875
BanII	GRGCYC	1 cut(s)	184
BbvI	GCAGC	4 cut(s)	136, 355, 409, 590
BccI	CCATC	2 cut(s)	503, 965
BciT130I	CCWGG	1 cut(s)	228
BclI	TGATCA	1 cut(s)	135
BcoDI	GTCTC	3 cut(s)	311, 440, 698
BfaI	CTAG	2 cut(s)	426, 801
BfmI	CTRYAG	3 cut(s)	219, 369, 933
BfoI	RGCGCY	1 cut(s)	516
BisI	GCNGC	5 cut(s)	6, 150, 369, 423, 579
BlsI	GCNGC	5 cut(s)	7, 151, 370, 424, 580
Bme1390I	CCNGG	1 cut(s)	228
Bme18I	GGWCC	2 cut(s)	761, 875
BmgT120I	GGNCC	2 cut(s)	761, 875
BmrFI	CCNGG	1 cut(s)	228
BmrI	ACTGGG	1 cut(s)	158
BmtI	GCTAGC	1 cut(s)	429
BmuI	ACTGGG	1 cut(s)	158
Bpu10I	CCTNAGC	2 cut(s)	407, 436
BpuEI	CTTGAG	2 cut(s)	68, 938
Bsa29I	ATCGAT	1 cut(s)	639
BsaJI	CCNNGG	1 cut(s)	227
BsaXI	ACNNNNNCTCC	2 cut(s)	193, 223
Bsc4I	CCNNNNNNNGG	3 cut(s)	459, 505, 804
Bse1I	ACTGG	3 cut(s)	164, 606, 857
BseBI	CCWGG	1 cut(s)	228
BseCI	ATCGAT	1 cut(s)	639
BseDI	CCNNGG	1 cut(s)	227
BseGI	GGATG	3 cut(s)	298, 495, 957
BseLI	CCNNNNNNNGG	3 cut(s)	459, 505, 804
BseMII	CTCAG	1 cut(s)	398
BseNI	ACTGG	3 cut(s)	164, 606, 857
BseXI	GCAGC	4 cut(s)	136, 355, 409, 590
BseYI	CCCAGC	1 cut(s)	515
BshVI	ATCGAT	1 cut(s)	639
BslI	CCNNNNNNNGG	3 cut(s)	459, 505, 804
BsmAI	GTCTC	3 cut(s)	311, 440, 698
Bsp1286I	GDGCHC	1 cut(s)	184
Bsp143I	GATC	5 cut(s)	91, 124, 135, 307, 865
BspACI	CCGC	2 cut(s)	725, 738
BspCNI	CTCAG	1 cut(s)	399
BspDI	ATCGAT	1 cut(s)	639
BspMAI	CTGCAG	1 cut(s)	373
BspOI	GCTAGC	1 cut(s)	429
BspPI	GGATC	4 cut(s)	86, 132, 315, 860
BsrI	ACTGG	3 cut(s)	164, 606, 857
BssECI	CCNNGG	1 cut(s)	227
BssMI	GATC	5 cut(s)	91, 124, 135, 307, 865
Bst2UI	CCWGG	1 cut(s)	228
Bst4CI	ACNGT	2 cut(s)	223, 360
BstAPI	GCANNNNNTGC	1 cut(s)	584
BstC8I	GCNNGC	3 cut(s)	427, 546, 589
BstDEI	CTNAG	2 cut(s)	407, 436
BstEII	GGTNACC	1 cut(s)	911
BstF5I	GGATG	3 cut(s)	298, 495, 957
BstH2I	RGCGCY	1 cut(s)	516
BstHHI	GCGC	1 cut(s)	515
BstKTI	GATC	5 cut(s)	94, 127, 138, 310, 868
BstMAI	GTCTC	3 cut(s)	311, 440, 698
BstMBI	GATC	5 cut(s)	91, 124, 135, 307, 865
BstMWI	GCNNNNNNNGC	3 cut(s)	550, 584, 722
BstNI	CCWGG	1 cut(s)	228
BstNSI	RCATGY	1 cut(s)	557
BstPI	GGTNACC	1 cut(s)	911
BstSCI	CCNGG	1 cut(s)	226
BstSFI	CTRYAG	3 cut(s)	219, 369, 933
BstV1I	GCAGC	4 cut(s)	136, 355, 409, 590
BstX2I	RGATCY	1 cut(s)	307
BstXI	CCANNNNNNTGG	1 cut(s)	601
BstYI	RGATCY	1 cut(s)	307
Bsu15I	ATCGAT	1 cut(s)	639
BsuTUI	ATCGAT	1 cut(s)	639
BtsCI	GGATG	3 cut(s)	298, 495, 957
BtsI	GCAGTG	1 cut(s)	363
BtsIMutI	CAGTG	2 cut(s)	363, 864
Cac8I	GCNNGC	3 cut(s)	427, 546, 589
CaiI	CAGNNNCTG	2 cut(s)	133, 584
CfoI	GCGC	1 cut(s)	515
Cfr13I	GGNCC	2 cut(s)	761, 875
ClaI	ATCGAT	1 cut(s)	639
Csp6I	GTAC	1 cut(s)	361
CviAII	CATG	2 cut(s)	554, 963
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	2 cut(s)	407, 436
DpnI	GATC	5 cut(s)	93, 126, 137, 309, 867
DpnII	GATC	5 cut(s)	91, 124, 135, 307, 865
Eco24I	GRGCYC	1 cut(s)	184
Eco47I	GGWCC	2 cut(s)	761, 875
Eco57I	CTGAAG	1 cut(s)	845
Eco91I	GGTNACC	1 cut(s)	911
EcoO65I	GGTNACC	1 cut(s)	911
EcoRII	CCWGG	1 cut(s)	226
EcoT38I	GRGCYC	1 cut(s)	184
FaeI	CATG	2 cut(s)	557, 966
FalI	AAGNNNNNCTT	2 cut(s)	818, 850
FatI	CATG	2 cut(s)	553, 962
FauI	CCCGC	1 cut(s)	731
FbaI	TGATCA	1 cut(s)	135
Fnu4HI	GCNGC	5 cut(s)	6, 150, 369, 423, 579
FokI	GGATG	3 cut(s)	305, 482, 944
FriOI	GRGCYC	1 cut(s)	184
Fsp4HI	GCNGC	5 cut(s)	6, 150, 369, 423, 579
FspBI	CTAG	2 cut(s)	426, 801
GlaI	GCGC	1 cut(s)	514
GluI	GCNGC	5 cut(s)	6, 150, 369, 423, 579
GsaI	CCCAGC	1 cut(s)	519
HaeII	RGCGCY	1 cut(s)	516
HhaI	GCGC	1 cut(s)	515
Hin1II	CATG	2 cut(s)	557, 966
Hin6I	GCGC	1 cut(s)	513
HinP1I	GCGC	1 cut(s)	513
HindIII	AAGCTT	1 cut(s)	616
HinfI	GANTC	2 cut(s)	20, 206
HphI	GGTGA	4 cut(s)	265, 340, 739, 862
Hpy166II	GTNNAC	2 cut(s)	331, 363
Hpy188I	TCNGA	3 cut(s)	58, 76, 96
Hpy188III	TCNNGA	3 cut(s)	110, 801, 927
Hpy8I	GTNNAC	2 cut(s)	331, 363
HpyAV	CCTTC	6 cut(s)	250, 440, 452, 728, 736, 841
HpyCH4III	ACNGT	2 cut(s)	223, 360
HpyCH4V	TGCA	4 cut(s)	8, 371, 587, 687
HpyF10VI	GCNNNNNNNGC	3 cut(s)	550, 584, 722
HpyF3I	CTNAG	2 cut(s)	407, 436
Hsp92II	CATG	2 cut(s)	557, 966
HspAI	GCGC	1 cut(s)	513
Ksp22I	TGATCA	1 cut(s)	135
Kzo9I	GATC	5 cut(s)	91, 124, 135, 307, 865
Lsp1109I	GCAGC	4 cut(s)	136, 355, 409, 590
MaeI	CTAG	2 cut(s)	426, 801
MaeIII	GTNAC	5 cut(s)	188, 271, 661, 748, 911
MalI	GATC	5 cut(s)	93, 126, 137, 309, 867
MboI	GATC	5 cut(s)	91, 124, 135, 307, 865
MboII	GAAGA	1 cut(s)	386
MflI	RGATCY	1 cut(s)	307
MhlI	GDGCHC	1 cut(s)	184
MluCI	AATT	2 cut(s)	114, 682
MlyI	GAGTC	1 cut(s)	200
MnlI	CCTC	8 cut(s)	21, 40, 115, 163, 503, 797, 808, 832
MroXI	GAANNNNTTC	1 cut(s)	70
MseI	TTAA	2 cut(s)	117, 282
MslI	CAYNNNNRTG	1 cut(s)	659
MspA1I	CMGCKG	1 cut(s)	544
MspR9I	CCNGG	1 cut(s)	228
MvaI	CCWGG	1 cut(s)	228
MwoI	GCNNNNNNNGC	3 cut(s)	550, 584, 722
NdeII	GATC	5 cut(s)	91, 124, 135, 307, 865
NheI	GCTAGC	1 cut(s)	425
NlaIII	CATG	2 cut(s)	557, 966
NmuCI	GTSAC	1 cut(s)	661
NspI	RCATGY	1 cut(s)	557
OliI	CACNNNNGTG	1 cut(s)	659
PdmI	GAANNNNTTC	1 cut(s)	70
PfeI	GAWTC	1 cut(s)	20
PkrI	GCNGC	5 cut(s)	7, 151, 370, 424, 580
PleI	GAGTC	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	200
Psp6I	CCWGG	1 cut(s)	226
PspEI	GGTNACC	1 cut(s)	911
PspFI	CCCAGC	1 cut(s)	515
PspGI	CCWGG	1 cut(s)	226
PspPI	GGNCC	2 cut(s)	761, 875
PstI	CTGCAG	1 cut(s)	373
PstNI	CAGNNNCTG	2 cut(s)	133, 584
PsuI	RGATCY	1 cut(s)	307
PvuII	CAGCTG	1 cut(s)	544
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
RseI	CAYNNNNRTG	1 cut(s)	659
SaqAI	TTAA	2 cut(s)	117, 282
SatI	GCNGC	5 cut(s)	6, 150, 369, 423, 579
Sau3AI	GATC	5 cut(s)	91, 124, 135, 307, 865
Sau96I	GGNCC	2 cut(s)	761, 875
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	1 cut(s)	228
SduI	GDGCHC	1 cut(s)	184
SfcI	CTRYAG	3 cut(s)	219, 369, 933
SinI	GGWCC	2 cut(s)	761, 875
SmiMI	CAYNNNNRTG	1 cut(s)	659
SmlI	CTYRAG	2 cut(s)	83, 917
SmoI	CTYRAG	2 cut(s)	83, 917
Sse9I	AATT	2 cut(s)	114, 682
SsiI	CCGC	2 cut(s)	725, 738
SspMI	CTAG	2 cut(s)	426, 801
StyD4I	CCNGG	1 cut(s)	226
TaaI	ACNGT	2 cut(s)	223, 360
TaqI	TCGA	1 cut(s)	639
TasI	AATT	2 cut(s)	114, 682
TatI	WGTACW	1 cut(s)	360
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	2 cut(s)	117, 282
Tru9I	TTAA	2 cut(s)	117, 282
TscAI	CASTG	2 cut(s)	370, 864
TseFI	GTSAC	1 cut(s)	661
TseI	GCWGC	5 cut(s)	5, 149, 368, 422, 578
Tsp45I	GTSAC	1 cut(s)	661
TspDTI	ATGAA	2 cut(s)	309, 471
TspRI	CASTG	2 cut(s)	370, 864
VpaK11BI	GGWCC	2 cut(s)	761, 875
XbaI	TCTAGA	1 cut(s)	800
XceI	RCATGY	1 cut(s)	557
XcmI	CCANNNNNNNNNTGG	1 cut(s)	502
XmnI	GAANNNNTTC	1 cut(s)	70
XspI	CTAG	2 cut(s)	426, 801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.