Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001188

Physical Location & Seq

Genomic Coordinates Forward (+)

62492738 .. 62495132

Gene Structure 2395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG414600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGCTAACCACCACTGCCACTCTCAGCTCCTCCTCTGCTTCCCAACTCGCACCACTCTTCCACTCTCTATCCCCAAACCCAATCTCCCTCAGATTCTCCTCCACGTTACAAGTAACCAACAACAGAGCCAGACGAACTCTCACAAGCTTCACTCGCCAAAAATGCCAGCTCCCTGCTCTGAGAGTGTCTGCTAGTTACGAAGCTGCCCCTGCTACGGCTGAGGCCTCCACGGTGCCGTCGGAAATGAAGGCGTGGGTGTATGACAAATATGGGGGTGTTGATGTCTTGAAGTTTGATACCAAAGTTGCAGTGCCTAAATTGCTGGATGATCAAGTCTTGATTAAGGTTATGGCTGCTGCGCTTAACCCGGTTGACTTCAAGAGGAGGCAGGGGAAGTTCCAGAACACTGACTCTCCGCTTCCGACTGTTCCGGGATATGATGTTGCAGGAGTGGTGGTGAAGGTTGGGAGTCAAGTAAAGGACTTTAAAGTGGGGGATGAAGTGTATGGGGACATACATGAGAAAGCATTGGATGGGCCTAAACAATCTGGCTCGCTTGCTGAGTACACTGCTGTTGAAGAGAGGTTGATTGCACTAAAGCCTAAGAATCTAGACTTTACGCAGGCTGCTTCACTGCCTCTTGCAATCGAGACTGCTTATGAGGGTCTCGAAAGGACAGGGTTCTCTGCTGGTAAATCATTGCTTGTTTTGAATGGTGCTGGTGGAGTCGGAAGCCTGGTGATTCAGCTAGCAAAACATGTATTTGGAGCTTCAAGAGTCGCGGCCACTTCAAGCACTGGAAAACTGGAGTTGTTGAAGAGCTTGGGGGCAGATTTGGCAATTGACTACACCAAGGAGAACATTGAAGAATTACCAGAAAAGTTTGATGTTGTCTATGATGCTATTGGTCAATGCGATAAAGCAGTGAAGGTGGTGAAAGAAGGCGGCGGTGTGGTGGCTCTTACAGGTGCAGTAACACCTCCAGGCTTCAGATTCGTAGTGACATCCAATGGAGCTGTCCTGAAGAAACTAAACCCATATTTAGAAAGTGGGAAGGTGAAGCCAGTGATAGACCCCAAAGGGCCCTTCCCTTTCTCCAAGCTCGTCGAGGCTTTCACTTACCTCGAAACAAATCGAGCCACTGGAAAGGTAGTCATAGATTCAATTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009941 GO:0010319 GO:0016491 GO:0016627 GO:0016628 GO:0031967 GO:0031975 GO:0035671 GO:0035798 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

390

Amino Acids

41.58

Weight (kDa)

8.89

Isoelectric Point (pI)

28.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	109 - 201	3.9e-18	Alcohol dehydrogenase GroES-like domain
Glu_dehyd_C	PF16912	215 - 331	4.9e-07	Glucose dehydrogenase C-terminus
ADH_zinc_N	PF00107	242 - 325	1.6e-14	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	275 - 386	3.3e-18	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23740
fragaria_vesca	FvH4_4g34500 FvH4_6g50700
malus_domestica	MD09G1033200.v1.1 MD09G1033600.v1.1 MD09G1033700.v1.1 MD09G1034000.v1.1 MD13G1092200.v1.1 MD16G1092800.v1.1
prunus_persica	Prupe.1G253500_v2.0.a1 Prupe.3G284300_v2.0.a1 Prupe.3G284400_v2.0.a1 Prupe.3G284700_v2.0.a1 Prupe.3G284800_v2.0.a1 Prupe.3G284900_v2.0.a1
pyrus_communis	pycom111g02680 pycom111g02700 pycom13g08010 pycom16g07920
rosa_chinensis	RchiOBHm_Chr2g0171461 RchiOBHm_Chr2g0171481 RchiOBHm_Chr2g0171491 RchiOBHm_Chr2g0172531 RchiOBHm_Chr4g0443881
rosa_laevigata	RLG00000005881 RLG00000022016 RLG00000022019 RLG00000022020 RLG00000022113 RLG00000023107
rosa_multiflora	Rmu_sc0000912.1_g000009 Rmu_sc0006783.1_g000002 Rmu_sc0006783.1_g000005 Rmu_sc0010179.1_g000003 Rmu_sc0019062.1_g000006
rosa_roxburghii	Rroxscaffold_2G00080590 Rroxscaffold_2G00080610 Rroxscaffold_2G00080630 Rroxscaffold_5G00384440
rosa_rugosa	Rorug02G0554600 Rorug02G0554700 Rorug02G0554800 Rorug04G0348000
rosa_samantha	Rh2AG628800 Rh2AG629000 Rh2BG639300 Rh2BG639500 Rh2BG639600 Rh2CG607900 Rh2CG608100 Rh2CG608200 Rh2CG615900 Rh4DG414600
rosa_wichuraiana	Rw2G052090 Rw2G052100 Rw2G052590 Rw4G035080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	232
AccII	CGCG	1 cut(s)	782
AciI	CCGC	4 cut(s)	416, 782, 945, 948
AcoI	YGGCCR	1 cut(s)	783
AcuI	CTGAAG	2 cut(s)	973, 1043
AfaI	GTAC	1 cut(s)	566
AfiI	CCNNNNNNNGG	1 cut(s)	214
AflIII	ACRYGT	1 cut(s)	757
AjnI	CCWGG	2 cut(s)	735, 982
AjuI	GAANNNNNNNTTGG	2 cut(s)	1070, 1102
AluBI	AGCT	9 cut(s)	27, 147, 169, 203, 748, 770, 822, 1016, 1102
AluI	AGCT	9 cut(s)	27, 147, 169, 203, 748, 770, 822, 1016, 1102
Alw26I	GTCTC	2 cut(s)	644, 671
AoxI	GGCC	4 cut(s)	222, 536, 783, 1082
ApaI	GGGCCC	1 cut(s)	1086
ApeKI	GCWGC	4 cut(s)	203, 353, 356, 626
AspLEI	GCGC	1 cut(s)	361
AspS9I	GGNCC	3 cut(s)	536, 1082, 1083
AsuC2I	CCSGG	2 cut(s)	368, 432
AsuHPI	GGTGA	4 cut(s)	469, 751, 946, 1069
AsuNHI	GCTAGC	1 cut(s)	748
BaeGI	GKGCMC	1 cut(s)	1086
BaeI	ACNNNNGTAYC	2 cut(s)	288, 321
BanI	GGYRCC	1 cut(s)	232
BanII	GRGCYC	1 cut(s)	1086
BbvCI	CCTCAGC	1 cut(s)	219
BbvI	GCAGC	4 cut(s)	190, 340, 343, 613
BccI	CCATC	1 cut(s)	527
BceAI	ACGGC	2 cut(s)	220, 231
BciT130I	CCWGG	2 cut(s)	737, 984
BclI	TGATCA	1 cut(s)	328
BcnI	CCSGG	2 cut(s)	368, 432
BcoDI	GTCTC	2 cut(s)	644, 671
BfaI	CTAG	3 cut(s)	192, 611, 749
BisI	GCNGC	6 cut(s)	204, 354, 357, 627, 783, 946
BlsI	GCNGC	6 cut(s)	205, 355, 358, 628, 784, 947
Bme1390I	CCNGG	4 cut(s)	368, 432, 737, 984
BmgT120I	GGNCC	3 cut(s)	536, 1082, 1083
BmiI	GGNNCC	2 cut(s)	234, 1084
BmrFI	CCNGG	4 cut(s)	368, 432, 737, 984
BmsI	GCATC	1 cut(s)	889
BmtI	GCTAGC	1 cut(s)	752
BpmI	CTGGAG	2 cut(s)	827, 966
Bpu10I	CCTNAGC	1 cut(s)	219
BpuMI	CCSGG	2 cut(s)	368, 432
BsaI	GGTCTC	1 cut(s)	671
BsaJI	CCNNGG	2 cut(s)	228, 852
BsaXI	ACNNNNNCTCC	6 cut(s)	68, 98, 397, 427, 441, 471
Bsc4I	CCNNNNNNNGG	1 cut(s)	214
Bse1I	ACTGG	4 cut(s)	802, 810, 1064, 1147
Bse3DI	GCAATG	1 cut(s)	698
BseBI	CCWGG	2 cut(s)	737, 984
BseDI	CCNNGG	2 cut(s)	228, 852
BseGI	GGATG	4 cut(s)	331, 502, 538, 1004
BseLI	CCNNNNNNNGG	1 cut(s)	214
BseMI	GCAATG	1 cut(s)	698
BseMII	CTCAG	5 cut(s)	37, 103, 170, 210, 552
BseNI	ACTGG	4 cut(s)	802, 810, 1064, 1147
BseRI	GAGGAG	4 cut(s)	19, 22, 88, 397
BseSI	GKGCMC	1 cut(s)	1086
BseXI	GCAGC	4 cut(s)	190, 340, 343, 613
BsgI	GTGCAG	1 cut(s)	990
Bsh1236I	CGCG	1 cut(s)	782
BshFI	GGCC	4 cut(s)	224, 538, 785, 1084
BshNI	GGYRCC	1 cut(s)	232
BsiSI	CCGG	2 cut(s)	368, 431
BslFI	GGGAC	1 cut(s)	524
BslI	CCNNNNNNNGG	1 cut(s)	214
BsmAI	GTCTC	2 cut(s)	644, 671
BsmFI	GGGAC	1 cut(s)	524
BsnI	GGCC	4 cut(s)	224, 538, 785, 1084
Bso31I	GGTCTC	1 cut(s)	671
Bsp120I	GGGCCC	1 cut(s)	1082
Bsp1286I	GDGCHC	1 cut(s)	1086
Bsp143I	GATC	1 cut(s)	328
BspACI	CCGC	4 cut(s)	416, 782, 945, 948
BspANI	GGCC	4 cut(s)	224, 538, 785, 1084
BspCNI	CTCAG	5 cut(s)	36, 102, 171, 211, 553
BspFNI	CGCG	1 cut(s)	782
BspLI	GGNNCC	2 cut(s)	234, 1084
BspOI	GCTAGC	1 cut(s)	752
BspQI	GCTCTTC	1 cut(s)	812
BspT107I	GGYRCC	1 cut(s)	232
BspTNI	GGTCTC	1 cut(s)	671
BsrDI	GCAATG	1 cut(s)	698
BsrI	ACTGG	4 cut(s)	802, 810, 1064, 1147
BssECI	CCNNGG	2 cut(s)	228, 852
BssMI	GATC	1 cut(s)	328
BssT1I	CCWWGG	1 cut(s)	852
Bst2UI	CCWGG	2 cut(s)	737, 984
Bst4CI	ACNGT	2 cut(s)	232, 427
Bst6I	CTCTTC	3 cut(s)	62, 573, 812
BstC8I	GCNNGC	5 cut(s)	167, 554, 558, 624, 750
BstDEI	CTNAG	6 cut(s)	23, 89, 179, 219, 561, 603
BstDSI	CCRYGG	1 cut(s)	228
BstF5I	GGATG	4 cut(s)	331, 502, 538, 1004
BstFNI	CGCG	1 cut(s)	782
BstHHI	GCGC	1 cut(s)	361
BstKTI	GATC	1 cut(s)	331
BstMAI	GTCTC	2 cut(s)	644, 671
BstMBI	GATC	1 cut(s)	328
BstMWI	GCNNNNNNNGC	5 cut(s)	153, 162, 209, 319, 836
BstNI	CCWGG	2 cut(s)	737, 984
BstNSI	RCATGY	1 cut(s)	761
BstSCI	CCNGG	4 cut(s)	366, 430, 735, 982
BstSLI	GKGCMC	1 cut(s)	1086
BstUI	CGCG	1 cut(s)	782
BstV1I	GCAGC	4 cut(s)	190, 340, 343, 613
BsuRI	GGCC	4 cut(s)	224, 538, 785, 1084
BtgI	CCRYGG	1 cut(s)	228
BtsCI	GGATG	4 cut(s)	331, 502, 538, 1004
BtsI	GCAGTG	5 cut(s)	12, 315, 567, 632, 930
BtsIMutI	CAGTG	9 cut(s)	12, 315, 405, 567, 632, 795, 930, 1071, 1140
Cac8I	GCNNGC	5 cut(s)	167, 554, 558, 624, 750
CfoI	GCGC	1 cut(s)	361
Cfr13I	GGNCC	3 cut(s)	536, 1082, 1083
Csp6I	GTAC	1 cut(s)	565
CviAII	CATG	2 cut(s)	518, 758
CviQI	GTAC	1 cut(s)	565
DdeI	CTNAG	6 cut(s)	23, 89, 179, 219, 561, 603
DpnI	GATC	1 cut(s)	330
DpnII	GATC	1 cut(s)	328
DraI	TTTAAA	1 cut(s)	487
EaeI	YGGCCR	1 cut(s)	783
Eam1104I	CTCTTC	3 cut(s)	62, 573, 812
EarI	CTCTTC	3 cut(s)	62, 573, 812
Eco130I	CCWWGG	1 cut(s)	852
Eco147I	AGGCCT	1 cut(s)	224
Eco24I	GRGCYC	1 cut(s)	1086
Eco31I	GGTCTC	1 cut(s)	671
Eco57I	CTGAAG	2 cut(s)	973, 1043
EcoO109I	RGGNCCY	2 cut(s)	1082, 1083
EcoRII	CCWGG	2 cut(s)	735, 982
EcoT14I	CCWWGG	1 cut(s)	852
EcoT38I	GRGCYC	1 cut(s)	1086
ErhI	CCWWGG	1 cut(s)	852
FaeI	CATG	2 cut(s)	521, 761
FaqI	GGGAC	1 cut(s)	524
FatI	CATG	2 cut(s)	517, 757
FbaI	TGATCA	1 cut(s)	328
Fnu4HI	GCNGC	6 cut(s)	204, 354, 357, 627, 783, 946
FokI	GGATG	4 cut(s)	338, 509, 545, 991
FriOI	GRGCYC	1 cut(s)	1086
Fsp4HI	GCNGC	6 cut(s)	204, 354, 357, 627, 783, 946
FspBI	CTAG	3 cut(s)	192, 611, 749
GlaI	GCGC	1 cut(s)	360
GluI	GCNGC	6 cut(s)	204, 354, 357, 627, 783, 946
GsuI	CTGGAG	2 cut(s)	827, 966
HaeIII	GGCC	4 cut(s)	224, 538, 785, 1084
HapII	CCGG	2 cut(s)	368, 431
HhaI	GCGC	1 cut(s)	361
Hin1II	CATG	2 cut(s)	521, 761
Hin6I	GCGC	1 cut(s)	359
HinP1I	GCGC	1 cut(s)	359
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HindIII	AAGCTT	1 cut(s)	145
HinfI	GANTC	9 cut(s)	93, 410, 469, 607, 726, 742, 777, 993, 1160
HpaII	CCGG	2 cut(s)	368, 431
HphI	GGTGA	4 cut(s)	469, 751, 946, 1069
Hpy166II	GTNNAC	2 cut(s)	373, 567
Hpy188I	TCNGA	6 cut(s)	92, 180, 241, 423, 731, 992
Hpy188III	TCNNGA	9 cut(s)	286, 337, 379, 400, 611, 649, 668, 774, 1021
Hpy8I	GTNNAC	2 cut(s)	373, 567
Hpy99I	CGWCG	2 cut(s)	241, 1109
HpyAV	CCTTC	6 cut(s)	241, 454, 922, 935, 1048, 1096
HpyCH4III	ACNGT	2 cut(s)	232, 427
HpyCH4IV	ACGT	1 cut(s)	104
HpyCH4V	TGCA	5 cut(s)	308, 446, 593, 644, 971
HpyF10VI	GCNNNNNNNGC	5 cut(s)	153, 162, 209, 319, 836
HpyF3I	CTNAG	6 cut(s)	23, 89, 179, 219, 561, 603
HpySE526I	ACGT	1 cut(s)	104
Hsp92II	CATG	2 cut(s)	521, 761
HspAI	GCGC	1 cut(s)	359
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	1 cut(s)	328
LguI	GCTCTTC	1 cut(s)	812
LmnI	GCTCC	4 cut(s)	32, 174, 767, 1013
Lsp1109I	GCAGC	4 cut(s)	190, 340, 343, 613
LweI	GCATC	1 cut(s)	889
MaeI	CTAG	3 cut(s)	192, 611, 749
MaeII	ACGT	1 cut(s)	104
MaeIII	GTNAC	5 cut(s)	105, 112, 194, 973, 1000
MalI	GATC	1 cut(s)	330
MboI	GATC	1 cut(s)	328
MboII	GAAGA	5 cut(s)	49, 590, 829, 878, 1036
MfeI	CAATTG	1 cut(s)	840
MhlI	GDGCHC	1 cut(s)	1086
MluCI	AATT	4 cut(s)	317, 840, 869, 1164
MlyI	GAGTC	4 cut(s)	404, 478, 735, 786
MmeI	TCCRAC	3 cut(s)	219, 446, 709
MseI	TTAA	3 cut(s)	342, 363, 486
MspI	CCGG	2 cut(s)	368, 431
MspR9I	CCNGG	4 cut(s)	368, 432, 737, 984
MunI	CAATTG	1 cut(s)	840
MvaI	CCWGG	2 cut(s)	737, 984
MvnI	CGCG	1 cut(s)	782
MwoI	GCNNNNNNNGC	5 cut(s)	153, 162, 209, 319, 836
NciI	CCSGG	2 cut(s)	368, 432
NdeII	GATC	1 cut(s)	328
NheI	GCTAGC	1 cut(s)	748
NlaIII	CATG	2 cut(s)	521, 761
NlaIV	GGNNCC	2 cut(s)	234, 1084
NmuCI	GTSAC	1 cut(s)	1000
NspI	RCATGY	1 cut(s)	761
PceI	AGGCCT	1 cut(s)	224
PciI	ACATGT	1 cut(s)	757
PciSI	GCTCTTC	1 cut(s)	812
PfeI	GAWTC	5 cut(s)	93, 607, 742, 993, 1160
PfoI	TCCNGGA	1 cut(s)	430
PkrI	GCNGC	6 cut(s)	205, 355, 358, 628, 784, 947
PleI	GAGTC	4 cut(s)	404, 477, 734, 785
PpsI	GAGTC	4 cut(s)	404, 477, 734, 785
PscI	ACATGT	1 cut(s)	757
Psp6I	CCWGG	2 cut(s)	735, 982
PspGI	CCWGG	2 cut(s)	735, 982
PspN4I	GGNNCC	2 cut(s)	234, 1084
PspOMI	GGGCCC	1 cut(s)	1082
PspPI	GGNCC	3 cut(s)	536, 1082, 1083
RsaI	GTAC	1 cut(s)	566
RsaNI	GTAC	1 cut(s)	565
SapI	GCTCTTC	1 cut(s)	812
SaqAI	TTAA	3 cut(s)	342, 363, 486
SatI	GCNGC	6 cut(s)	204, 354, 357, 627, 783, 946
Sau3AI	GATC	1 cut(s)	328
Sau96I	GGNCC	3 cut(s)	536, 1082, 1083
SchI	GAGTC	4 cut(s)	404, 478, 735, 786
ScrFI	CCNGG	4 cut(s)	368, 432, 737, 984
SduI	GDGCHC	1 cut(s)	1086
SfaNI	GCATC	1 cut(s)	889
Sse9I	AATT	4 cut(s)	317, 840, 869, 1164
SseBI	AGGCCT	1 cut(s)	224
SsiI	CCGC	4 cut(s)	416, 782, 945, 948
SspMI	CTAG	3 cut(s)	192, 611, 749
StuI	AGGCCT	1 cut(s)	224
StyD4I	CCNGG	4 cut(s)	366, 430, 735, 982
StyI	CCWWGG	1 cut(s)	852
TaaI	ACNGT	2 cut(s)	232, 427
TaiI	ACGT	1 cut(s)	107
TaqI	TCGA	5 cut(s)	648, 669, 1107, 1125, 1135
TasI	AATT	4 cut(s)	317, 840, 869, 1164
TatI	WGTACW	1 cut(s)	564
TauI	GCSGC	2 cut(s)	785, 948
TfiI	GAWTC	5 cut(s)	93, 607, 742, 993, 1160
Tru1I	TTAA	3 cut(s)	342, 363, 486
Tru9I	TTAA	3 cut(s)	342, 363, 486
TscAI	CASTG	9 cut(s)	19, 315, 412, 574, 639, 802, 930, 1071, 1147
TseFI	GTSAC	1 cut(s)	1000
TseI	GCWGC	4 cut(s)	203, 353, 356, 626
Tsp45I	GTSAC	1 cut(s)	1000
TspDTI	ATGAA	2 cut(s)	260, 513
TspRI	CASTG	9 cut(s)	19, 315, 412, 574, 639, 802, 930, 1071, 1147
XbaI	TCTAGA	1 cut(s)	610
XceI	RCATGY	1 cut(s)	761
XspI	CTAG	3 cut(s)	192, 611, 749

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.