Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001188

Physical Location & Seq

Genomic Coordinates Reverse (-)

68156181 .. 68158337

Gene Structure 2157 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0554600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGATTTGATGAGCAGTTTCAATGAGAATGCAAGCGATTCAAATTCTAAGTTACCTTCTTCACGGTACAAAGGAGTAGTCCCGCAGCCTAATGGCCGTTGGGGAGCGCAGATATACGAGAAGCACCAGAGAGTATGGTTGGGAACGTTCAATGGAGAAGAAGAAGCTGCCAAGGCATACGACATTGCTTCACAAAGGTTCCGAGGCCTCGACGCCATCACGAACTTCAAGCAATCCTCATGGAGTGCCACCATAGATGATCAGGAAGATGAGGCTTTCTTCTTGCAGTCACATTCCAAGGCCGAGATCGTTGACATGCTTCGAAAACACTCCTACACCAATGAGCTAGAGCTGTTCAAGCAGCACAAGAATGGTGGCAAGAGAATAAAGTACCGTAACATTGATGTGATGGACATTCATAATCAGAAGGAATGGCTGTTCGAGAAGGTGCTAACACCAAGCGATGTGGGGAGGCTAAACCGGTTTGTCATACCGAAACAACAAGCCGAGAAGCATTTTCCGTTGATGGATTCTGAAGCTAAGGGAGCGTTGCTAAATTTTGAGGATGATTTGGGGAATGTGTGGAGGTTTAGGTATTGTTTTTGGAGTAGCAGTCAGAGTTATGTGTTGACAAAAGGGTGGACTCGGTTTGTGAAGGAGAAGAAGCTGAAAGGGGGTGGATGTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0002183 GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0005085 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0019899 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0051020 GO:0065007 GO:0065009 GO:0071704 GO:0097159 GO:0098772 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Hexapep Hexapep_2 NTP_transferase W2

Protein Analysis

229

Amino Acids

26.59

Weight (kDa)

8.91

Isoelectric Point (pI)

40.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	21 - 69	3.1e-09	AP2 domain
B3	PF02362	147 - 226	1.1e-20	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23740
fragaria_vesca	FvH4_4g34500 FvH4_6g50700
malus_domestica	MD09G1033200.v1.1 MD09G1033600.v1.1 MD09G1033700.v1.1 MD09G1034000.v1.1 MD13G1092200.v1.1 MD16G1092800.v1.1
prunus_persica	Prupe.1G253500_v2.0.a1 Prupe.3G284300_v2.0.a1 Prupe.3G284400_v2.0.a1 Prupe.3G284700_v2.0.a1 Prupe.3G284800_v2.0.a1 Prupe.3G284900_v2.0.a1
pyrus_communis	pycom111g02680 pycom111g02700 pycom13g08010 pycom16g07920
rosa_chinensis	RchiOBHm_Chr2g0171461 RchiOBHm_Chr2g0171481 RchiOBHm_Chr2g0171491 RchiOBHm_Chr2g0172531 RchiOBHm_Chr4g0443881
rosa_laevigata	RLG00000005881 RLG00000022016 RLG00000022019 RLG00000022020 RLG00000022113 RLG00000023107
rosa_multiflora	Rmu_sc0000912.1_g000009 Rmu_sc0006783.1_g000002 Rmu_sc0006783.1_g000005 Rmu_sc0010179.1_g000003 Rmu_sc0019062.1_g000006
rosa_roxburghii	Rroxscaffold_2G00080590 Rroxscaffold_2G00080610 Rroxscaffold_2G00080630 Rroxscaffold_5G00384440
rosa_rugosa	Rorug02G0554600 Rorug02G0554700 Rorug02G0554800 Rorug04G0348000
rosa_samantha	Rh2AG628800 Rh2AG629000 Rh2BG639300 Rh2BG639500 Rh2BG639600 Rh2CG607900 Rh2CG608100 Rh2CG608200 Rh2CG615900 Rh4DG414600
rosa_wichuraiana	Rw2G052090 Rw2G052100 Rw2G052590 Rw4G035080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	83
AclI	AACGTT	1 cut(s)	146
AcoI	YGGCCR	1 cut(s)	94
AcsI	RAATTY	2 cut(s)	43, 556
AcuI	CTGAAG	1 cut(s)	555
AcyI	GRCGYC	1 cut(s)	213
AfaI	GTAC	2 cut(s)	68, 392
AgeI	ACCGGT	1 cut(s)	480
AgsI	TTSAA	5 cut(s)	22, 42, 151, 229, 358
AloI	GAACNNNNNNTCC	2 cut(s)	422, 454
AluBI	AGCT	5 cut(s)	167, 346, 352, 539, 667
AluI	AGCT	5 cut(s)	167, 346, 352, 539, 667
AoxI	GGCC	3 cut(s)	94, 205, 300
ApeKI	GCWGC	3 cut(s)	85, 167, 361
ApoI	RAATTY	2 cut(s)	43, 556
ArsI	GACNNNNNNTTYG	2 cut(s)	63, 95
AsiGI	ACCGGT	1 cut(s)	480
AspLEI	GCGC	1 cut(s)	109
AsuII	TTCGAA	1 cut(s)	322
BbvI	GCAGC	3 cut(s)	97, 154, 373
BccI	CCATC	3 cut(s)	224, 403, 520
BceAI	ACGGC	1 cut(s)	81
BclI	TGATCA	1 cut(s)	259
BfaI	CTAG	1 cut(s)	347
BisI	GCNGC	3 cut(s)	86, 168, 362
BlsI	GCNGC	3 cut(s)	87, 169, 363
BmiI	GGNNCC	1 cut(s)	200
Bpu10I	CCTNAGC	1 cut(s)	540
Bpu14I	TTCGAA	1 cut(s)	322
BsaHI	GRCGYC	1 cut(s)	213
BsaJI	CCNNGG	3 cut(s)	171, 202, 297
BsaWI	WCCGGW	1 cut(s)	480
BsaXI	ACNNNNNCTCC	2 cut(s)	598, 628
Bse118I	RCCGGY	1 cut(s)	480
Bse3DI	GCAATG	1 cut(s)	183
BseDI	CCNNGG	3 cut(s)	171, 202, 297
BseGI	GGATG	2 cut(s)	571, 686
BseMI	GCAATG	1 cut(s)	183
BseXI	GCAGC	3 cut(s)	97, 154, 373
BshFI	GGCC	3 cut(s)	96, 207, 302
BshTI	ACCGGT	1 cut(s)	480
BsiSI	CCGG	1 cut(s)	481
BslFI	GGGAC	1 cut(s)	65
BsmFI	GGGAC	1 cut(s)	65
BsmI	GAATGC	1 cut(s)	34
BsnI	GGCC	3 cut(s)	96, 207, 302
Bsp119I	TTCGAA	1 cut(s)	322
Bsp143I	GATC	2 cut(s)	259, 306
BspACI	CCGC	1 cut(s)	83
BspANI	GGCC	3 cut(s)	96, 207, 302
BspLI	GGNNCC	1 cut(s)	200
BspT104I	TTCGAA	1 cut(s)	322
BsrDI	GCAATG	1 cut(s)	183
BsrFI	RCCGGY	1 cut(s)	480
BssAI	RCCGGY	1 cut(s)	480
BssECI	CCNNGG	3 cut(s)	171, 202, 297
BssMI	GATC	2 cut(s)	259, 306
BssNI	GRCGYC	1 cut(s)	213
BssT1I	CCWWGG	2 cut(s)	171, 297
Bst4CI	ACNGT	2 cut(s)	66, 395
BstACI	GRCGYC	1 cut(s)	213
BstBI	TTCGAA	1 cut(s)	322
BstC8I	GCNNGC	1 cut(s)	34
BstDEI	CTNAG	2 cut(s)	48, 540
BstF5I	GGATG	2 cut(s)	571, 686
BstHHI	GCGC	1 cut(s)	109
BstKTI	GATC	2 cut(s)	262, 309
BstMBI	GATC	2 cut(s)	259, 306
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 358, 545
BstNSI	RCATGY	1 cut(s)	319
BstV1I	GCAGC	3 cut(s)	97, 154, 373
BsuRI	GGCC	3 cut(s)	96, 207, 302
BtgZI	GCGATG	1 cut(s)	477
BtsCI	GGATG	2 cut(s)	571, 686
Cac8I	GCNNGC	1 cut(s)	34
CfoI	GCGC	1 cut(s)	109
Cfr10I	RCCGGY	1 cut(s)	480
CseI	GACGC	1 cut(s)	221
Csp6I	GTAC	2 cut(s)	67, 391
CspAI	ACCGGT	1 cut(s)	480
CspCI	CAANNNNNGTGG	4 cut(s)	355, 390, 447, 482
CviAII	CATG	2 cut(s)	240, 316
CviQI	GTAC	2 cut(s)	67, 391
DdeI	CTNAG	2 cut(s)	48, 540
DpnI	GATC	2 cut(s)	261, 308
DpnII	GATC	2 cut(s)	259, 306
EaeI	YGGCCR	1 cut(s)	94
Eco130I	CCWWGG	2 cut(s)	171, 297
Eco147I	AGGCCT	1 cut(s)	207
Eco57I	CTGAAG	1 cut(s)	555
EcoT14I	CCWWGG	2 cut(s)	171, 297
ErhI	CCWWGG	2 cut(s)	171, 297
FaeI	CATG	2 cut(s)	243, 319
FaiI	YATR	9 cut(s)	115, 136, 178, 241, 254, 317, 420, 491, 624
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	2 cut(s)	239, 315
FauI	CCCGC	1 cut(s)	90
FbaI	TGATCA	1 cut(s)	259
Fnu4HI	GCNGC	3 cut(s)	86, 168, 362
FokI	GGATG	1 cut(s)	578
Fsp4HI	GCNGC	3 cut(s)	86, 168, 362
FspBI	CTAG	1 cut(s)	347
GlaI	GCGC	1 cut(s)	108
GluI	GCNGC	3 cut(s)	86, 168, 362
HaeIII	GGCC	3 cut(s)	96, 207, 302
HapII	CCGG	1 cut(s)	481
HgaI	GACGC	1 cut(s)	221
HhaI	GCGC	1 cut(s)	109
Hin1I	GRCGYC	1 cut(s)	213
Hin1II	CATG	2 cut(s)	243, 319
Hin6I	GCGC	1 cut(s)	107
HinP1I	GCGC	1 cut(s)	107
HincII	GTYRAC	2 cut(s)	313, 630
HindII	GTYRAC	2 cut(s)	313, 630
HinfI	GANTC	3 cut(s)	38, 530, 643
HpaII	CCGG	1 cut(s)	481
Hpy166II	GTNNAC	3 cut(s)	313, 630, 642
Hpy188I	TCNGA	4 cut(s)	203, 426, 535, 618
Hpy188III	TCNNGA	3 cut(s)	220, 263, 442
Hpy8I	GTNNAC	3 cut(s)	313, 630, 642
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	4 cut(s)	66, 421, 439, 649
HpyCH4III	ACNGT	2 cut(s)	66, 395
HpyCH4IV	ACGT	1 cut(s)	146
HpyCH4V	TGCA	2 cut(s)	32, 286
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 358, 545
HpyF3I	CTNAG	2 cut(s)	48, 540
HpySE526I	ACGT	1 cut(s)	146
Hsp92I	GRCGYC	1 cut(s)	213
Hsp92II	CATG	2 cut(s)	243, 319
HspAI	GCGC	1 cut(s)	107
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	2 cut(s)	259, 306
LmnI	GCTCC	2 cut(s)	104, 545
LpnPI	CCDG	3 cut(s)	140, 248, 494
Lsp1109I	GCAGC	3 cut(s)	97, 154, 373
MaeI	CTAG	1 cut(s)	347
MaeII	ACGT	1 cut(s)	146
MaeIII	GTNAC	3 cut(s)	51, 288, 395
MalI	GATC	2 cut(s)	261, 308
MboI	GATC	2 cut(s)	259, 306
MboII	GAAGA	6 cut(s)	51, 170, 173, 271, 278, 673
MluCI	AATT	3 cut(s)	43, 556, 685
MlyI	GAGTC	1 cut(s)	637
MnlI	CCTC	7 cut(s)	197, 218, 247, 265, 465, 556, 579
MslI	CAYNNNNRTG	2 cut(s)	369, 404
MspI	CCGG	1 cut(s)	481
Mva1269I	GAATGC	1 cut(s)	34
MwoI	GCNNNNNNNGC	3 cut(s)	173, 358, 545
NdeII	GATC	2 cut(s)	259, 306
NlaIII	CATG	2 cut(s)	243, 319
NlaIV	GGNNCC	1 cut(s)	200
NmeAIII	GCCGAG	2 cut(s)	328, 532
NmuCI	GTSAC	1 cut(s)	288
NspI	RCATGY	1 cut(s)	319
NspV	TTCGAA	1 cut(s)	322
PceI	AGGCCT	1 cut(s)	207
PctI	GAATGC	1 cut(s)	34
PfeI	GAWTC	2 cut(s)	38, 530
PinAI	ACCGGT	1 cut(s)	480
PkrI	GCNGC	3 cut(s)	87, 169, 363
PleI	GAGTC	1 cut(s)	637
PpsI	GAGTC	1 cut(s)	637
Psp1406I	AACGTT	1 cut(s)	146
PspN4I	GGNNCC	1 cut(s)	200
RsaI	GTAC	2 cut(s)	68, 392
RsaNI	GTAC	2 cut(s)	67, 391
RseI	CAYNNNNRTG	2 cut(s)	369, 404
SatI	GCNGC	3 cut(s)	86, 168, 362
Sau3AI	GATC	2 cut(s)	259, 306
SchI	GAGTC	1 cut(s)	637
SfuI	TTCGAA	1 cut(s)	322
SmiMI	CAYNNNNRTG	2 cut(s)	369, 404
Sse9I	AATT	3 cut(s)	43, 556, 685
SseBI	AGGCCT	1 cut(s)	207
SsiI	CCGC	1 cut(s)	83
SspMI	CTAG	1 cut(s)	347
StuI	AGGCCT	1 cut(s)	207
StyI	CCWWGG	2 cut(s)	171, 297
TaaI	ACNGT	2 cut(s)	66, 395
TaiI	ACGT	1 cut(s)	149
TaqI	TCGA	3 cut(s)	210, 322, 441
TasI	AATT	3 cut(s)	43, 556, 685
TfiI	GAWTC	2 cut(s)	38, 530
TseFI	GTSAC	1 cut(s)	288
TseI	GCWGC	3 cut(s)	85, 167, 361
Tsp45I	GTSAC	1 cut(s)	288
TspDTI	ATGAA	1 cut(s)	407
TspGWI	ACGGA	1 cut(s)	510
XapI	RAATTY	2 cut(s)	43, 556
XceI	RCATGY	1 cut(s)	319
XspI	CTAG	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.