Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019062.1

Orthogroup ID

OG0001188

Physical Location & Seq

Genomic Coordinates Forward (+)

24934 .. 26884

Gene Structure 1951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019062.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

atgccagatgataatcctaatttagacaatacaggaagagcaaagttccagaacactgactctccgcttccgactgttccgggatatgatgttgcaggtgtggtggtgaaggttgggagtcaagtaaaggactttaaagtgggggatgaagtgtatggggacatacatgagaaagctttggatgggcctaaacaatctggctcgcttgctgagtacactgctgttgaagagaggttgattgcactaaagcctaagaatctagactttacgcaggctgcttcactgcctcttgcaatcgagactgcttatgagggtctcgaaaggacagggttctctgctggtaaatcattgcttgttttgaatggtgctggtggagtcggaagcctggtgattcagctagcaaaacatgtatttggagcttcaagagtcgcggccacttcaagcactggaaaactggagttgttgaagagcttgggggcagatttggcaattgactacaccaaggagaacattgaagaattaccagaaaagtttgatgttgtctatgatgctattggtcaatgcgataaagcagtgaaggtggtgaaagaaggcggcagtgtggtggctcttacaggtgcagtaacacctccaggcttcagattcgtagtgacatccaatggggctgtcctgaagaaactaaacccatatttagaaagtgggaaggtgaagccagtgatagaccccaaagggcccttccctttctccaagctcgtcgaggctttcacttacctcgaaacaaatcgagccactggaaaggtagtcatagattcaattcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009941 GO:0010319 GO:0016491 GO:0016627 GO:0016628 GO:0031967 GO:0031975 GO:0035671 GO:0035798 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

273

Amino Acids

28.88

Weight (kDa)

5.4

Isoelectric Point (pI)

20.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23740
fragaria_vesca	FvH4_4g34500 FvH4_6g50700
malus_domestica	MD09G1033200.v1.1 MD09G1033600.v1.1 MD09G1033700.v1.1 MD09G1034000.v1.1 MD13G1092200.v1.1 MD16G1092800.v1.1
prunus_persica	Prupe.1G253500_v2.0.a1 Prupe.3G284300_v2.0.a1 Prupe.3G284400_v2.0.a1 Prupe.3G284700_v2.0.a1 Prupe.3G284800_v2.0.a1 Prupe.3G284900_v2.0.a1
pyrus_communis	pycom111g02680 pycom111g02700 pycom13g08010 pycom16g07920
rosa_chinensis	RchiOBHm_Chr2g0171461 RchiOBHm_Chr2g0171481 RchiOBHm_Chr2g0171491 RchiOBHm_Chr2g0172531 RchiOBHm_Chr4g0443881
rosa_laevigata	RLG00000005881 RLG00000022016 RLG00000022019 RLG00000022020 RLG00000022113 RLG00000023107
rosa_multiflora	Rmu_sc0000912.1_g000009 Rmu_sc0006783.1_g000002 Rmu_sc0006783.1_g000005 Rmu_sc0010179.1_g000003 Rmu_sc0019062.1_g000006
rosa_roxburghii	Rroxscaffold_2G00080590 Rroxscaffold_2G00080610 Rroxscaffold_2G00080630 Rroxscaffold_5G00384440
rosa_rugosa	Rorug02G0554600 Rorug02G0554700 Rorug02G0554800 Rorug04G0348000
rosa_samantha	Rh2AG628800 Rh2AG629000 Rh2BG639300 Rh2BG639500 Rh2BG639600 Rh2CG607900 Rh2CG608100 Rh2CG608200 Rh2CG615900 Rh4DG414600
rosa_wichuraiana	Rw2G052090 Rw2G052100 Rw2G052590 Rw4G035080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	86
Acc36I	ACCTGC	1 cut(s)	86
AccII	CGCG	1 cut(s)	431
AciI	CCGC	3 cut(s)	65, 431, 594
AcoI	YGGCCR	1 cut(s)	432
AcuI	CTGAAG	2 cut(s)	622, 692
AfaI	GTAC	1 cut(s)	215
AflIII	ACRYGT	1 cut(s)	406
AgsI	TTSAA	8 cut(s)	227, 361, 423, 441, 466, 515, 813, 818
AjnI	CCWGG	2 cut(s)	384, 631
AjuI	GAANNNNNNNTTGG	2 cut(s)	719, 751
AluBI	AGCT	5 cut(s)	176, 397, 419, 471, 751
AluI	AGCT	5 cut(s)	176, 397, 419, 471, 751
Alw26I	GTCTC	2 cut(s)	293, 320
AoxI	GGCC	3 cut(s)	185, 432, 731
ApaI	GGGCCC	1 cut(s)	735
ApeKI	GCWGC	1 cut(s)	275
AspS9I	GGNCC	3 cut(s)	185, 731, 732
AsuC2I	CCSGG	1 cut(s)	81
AsuHPI	GGTGA	4 cut(s)	118, 400, 595, 718
AsuNHI	GCTAGC	1 cut(s)	397
BaeGI	GKGCMC	1 cut(s)	735
BanII	GRGCYC	1 cut(s)	735
BbvI	GCAGC	1 cut(s)	262
BccI	CCATC	1 cut(s)	176
BciT130I	CCWGG	2 cut(s)	386, 633
BcnI	CCSGG	1 cut(s)	81
BcoDI	GTCTC	2 cut(s)	293, 320
BfaI	CTAG	2 cut(s)	260, 398
BfuAI	ACCTGC	1 cut(s)	86
BisI	GCNGC	3 cut(s)	276, 432, 595
BlsI	GCNGC	3 cut(s)	277, 433, 596
Bme1390I	CCNGG	3 cut(s)	81, 386, 633
BmgT120I	GGNCC	3 cut(s)	185, 731, 732
BmiI	GGNNCC	1 cut(s)	733
BmrFI	CCNGG	3 cut(s)	81, 386, 633
BmsI	GCATC	1 cut(s)	538
BmtI	GCTAGC	1 cut(s)	401
BpmI	CTGGAG	2 cut(s)	476, 615
BpuMI	CCSGG	1 cut(s)	81
BsaBI	GATNNNNATC	1 cut(s)	12
BsaI	GGTCTC	1 cut(s)	320
BsaJI	CCNNGG	1 cut(s)	501
BsaXI	ACNNNNNCTCC	2 cut(s)	46, 76
Bse1I	ACTGG	4 cut(s)	451, 459, 713, 796
Bse3DI	GCAATG	1 cut(s)	347
Bse8I	GATNNNNATC	1 cut(s)	12
BseBI	CCWGG	2 cut(s)	386, 633
BseDI	CCNNGG	1 cut(s)	501
BseGI	GGATG	3 cut(s)	151, 187, 653
BseJI	GATNNNNATC	1 cut(s)	12
BseMI	GCAATG	1 cut(s)	347
BseMII	CTCAG	1 cut(s)	201
BseNI	ACTGG	4 cut(s)	451, 459, 713, 796
BseSI	GKGCMC	1 cut(s)	735
BseXI	GCAGC	1 cut(s)	262
BsgI	GTGCAG	1 cut(s)	639
Bsh1236I	CGCG	1 cut(s)	431
BshFI	GGCC	3 cut(s)	187, 434, 733
BsiSI	CCGG	1 cut(s)	80
BslFI	GGGAC	1 cut(s)	173
BsmAI	GTCTC	2 cut(s)	293, 320
BsmFI	GGGAC	1 cut(s)	173
BsnI	GGCC	3 cut(s)	187, 434, 733
Bso31I	GGTCTC	1 cut(s)	320
Bsp120I	GGGCCC	1 cut(s)	731
Bsp1286I	GDGCHC	1 cut(s)	735
BspACI	CCGC	3 cut(s)	65, 431, 594
BspANI	GGCC	3 cut(s)	187, 434, 733
BspCNI	CTCAG	1 cut(s)	202
BspFNI	CGCG	1 cut(s)	431
BspLI	GGNNCC	1 cut(s)	733
BspMI	ACCTGC	1 cut(s)	86
BspOI	GCTAGC	1 cut(s)	401
BspQI	GCTCTTC	2 cut(s)	31, 461
BspTNI	GGTCTC	1 cut(s)	320
BsrDI	GCAATG	1 cut(s)	347
BsrI	ACTGG	4 cut(s)	451, 459, 713, 796
BssECI	CCNNGG	1 cut(s)	501
BssT1I	CCWWGG	1 cut(s)	501
Bst2UI	CCWGG	2 cut(s)	386, 633
Bst4CI	ACNGT	1 cut(s)	76
Bst6I	CTCTTC	3 cut(s)	31, 222, 461
BstC8I	GCNNGC	4 cut(s)	203, 207, 273, 399
BstDEI	CTNAG	2 cut(s)	210, 252
BstF5I	GGATG	3 cut(s)	151, 187, 653
BstFNI	CGCG	1 cut(s)	431
BstMAI	GTCTC	2 cut(s)	293, 320
BstMWI	GCNNNNNNNGC	1 cut(s)	485
BstNI	CCWGG	2 cut(s)	386, 633
BstNSI	RCATGY	1 cut(s)	410
BstSCI	CCNGG	3 cut(s)	79, 384, 631
BstSLI	GKGCMC	1 cut(s)	735
BstUI	CGCG	1 cut(s)	431
BstV1I	GCAGC	1 cut(s)	262
BsuRI	GGCC	3 cut(s)	187, 434, 733
BtsCI	GGATG	3 cut(s)	151, 187, 653
BtsI	GCAGTG	4 cut(s)	216, 281, 579, 604
BtsIMutI	CAGTG	8 cut(s)	54, 216, 281, 444, 579, 604, 720, 789
BveI	ACCTGC	1 cut(s)	86
Cac8I	GCNNGC	4 cut(s)	203, 207, 273, 399
Cfr13I	GGNCC	3 cut(s)	185, 731, 732
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	2 cut(s)	167, 407
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	2 cut(s)	210, 252
DraI	TTTAAA	1 cut(s)	136
EaeI	YGGCCR	1 cut(s)	432
Eam1104I	CTCTTC	3 cut(s)	31, 222, 461
EarI	CTCTTC	3 cut(s)	31, 222, 461
Eco130I	CCWWGG	1 cut(s)	501
Eco24I	GRGCYC	1 cut(s)	735
Eco31I	GGTCTC	1 cut(s)	320
Eco57I	CTGAAG	2 cut(s)	622, 692
EcoO109I	RGGNCCY	2 cut(s)	731, 732
EcoRII	CCWGG	2 cut(s)	384, 631
EcoT14I	CCWWGG	1 cut(s)	501
EcoT38I	GRGCYC	1 cut(s)	735
ErhI	CCWWGG	1 cut(s)	501
FaeI	CATG	2 cut(s)	170, 410
FaiI	YATR	9 cut(s)	87, 156, 164, 168, 309, 408, 546, 688, 806
FaqI	GGGAC	1 cut(s)	173
FatI	CATG	2 cut(s)	166, 406
Fnu4HI	GCNGC	3 cut(s)	276, 432, 595
FokI	GGATG	3 cut(s)	158, 194, 640
FriOI	GRGCYC	1 cut(s)	735
Fsp4HI	GCNGC	3 cut(s)	276, 432, 595
FspBI	CTAG	2 cut(s)	260, 398
GluI	GCNGC	3 cut(s)	276, 432, 595
GsuI	CTGGAG	2 cut(s)	476, 615
HaeIII	GGCC	3 cut(s)	187, 434, 733
HapII	CCGG	1 cut(s)	80
Hin1II	CATG	2 cut(s)	170, 410
HindIII	AAGCTT	1 cut(s)	174
HinfI	GANTC	8 cut(s)	59, 118, 256, 375, 391, 426, 642, 809
HpaII	CCGG	1 cut(s)	80
HphI	GGTGA	4 cut(s)	118, 400, 595, 718
Hpy166II	GTNNAC	1 cut(s)	216
Hpy188I	TCNGA	3 cut(s)	72, 380, 641
Hpy188III	TCNNGA	6 cut(s)	49, 260, 298, 317, 423, 670
Hpy8I	GTNNAC	1 cut(s)	216
Hpy99I	CGWCG	1 cut(s)	758
HpyAV	CCTTC	5 cut(s)	103, 571, 584, 697, 745
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4V	TGCA	4 cut(s)	95, 242, 293, 620
HpyF10VI	GCNNNNNNNGC	1 cut(s)	485
HpyF3I	CTNAG	2 cut(s)	210, 252
Hsp92II	CATG	2 cut(s)	170, 410
LguI	GCTCTTC	2 cut(s)	31, 461
LmnI	GCTCC	1 cut(s)	416
Lsp1109I	GCAGC	1 cut(s)	262
LweI	GCATC	1 cut(s)	538
MaeI	CTAG	2 cut(s)	260, 398
MaeIII	GTNAC	2 cut(s)	622, 649
MboII	GAAGA	5 cut(s)	48, 239, 478, 527, 685
MfeI	CAATTG	1 cut(s)	489
MhlI	GDGCHC	1 cut(s)	735
MluCI	AATT	4 cut(s)	19, 489, 518, 813
MlyI	GAGTC	4 cut(s)	53, 127, 384, 435
MmeI	TCCRAC	2 cut(s)	95, 358
MnlI	CCTC	6 cut(s)	225, 297, 304, 639, 751, 782
MseI	TTAA	1 cut(s)	135
MspI	CCGG	1 cut(s)	80
MspR9I	CCNGG	3 cut(s)	81, 386, 633
MunI	CAATTG	1 cut(s)	489
MvaI	CCWGG	2 cut(s)	386, 633
MvnI	CGCG	1 cut(s)	431
MwoI	GCNNNNNNNGC	1 cut(s)	485
NciI	CCSGG	1 cut(s)	81
NheI	GCTAGC	1 cut(s)	397
NlaIII	CATG	2 cut(s)	170, 410
NlaIV	GGNNCC	1 cut(s)	733
NmuCI	GTSAC	1 cut(s)	649
NspI	RCATGY	1 cut(s)	410
PaqCI	CACCTGC	1 cut(s)	86
PciI	ACATGT	1 cut(s)	406
PciSI	GCTCTTC	2 cut(s)	31, 461
PfeI	GAWTC	4 cut(s)	256, 391, 642, 809
PfoI	TCCNGGA	1 cut(s)	79
PkrI	GCNGC	3 cut(s)	277, 433, 596
PleI	GAGTC	4 cut(s)	53, 126, 383, 434
PpsI	GAGTC	4 cut(s)	53, 126, 383, 434
PscI	ACATGT	1 cut(s)	406
Psp6I	CCWGG	2 cut(s)	384, 631
PspGI	CCWGG	2 cut(s)	384, 631
PspN4I	GGNNCC	1 cut(s)	733
PspOMI	GGGCCC	1 cut(s)	731
PspPI	GGNCC	3 cut(s)	185, 731, 732
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
SapI	GCTCTTC	2 cut(s)	31, 461
SaqAI	TTAA	1 cut(s)	135
SatI	GCNGC	3 cut(s)	276, 432, 595
Sau96I	GGNCC	3 cut(s)	185, 731, 732
SchI	GAGTC	4 cut(s)	53, 127, 384, 435
ScrFI	CCNGG	3 cut(s)	81, 386, 633
SduI	GDGCHC	1 cut(s)	735
SfaNI	GCATC	1 cut(s)	538
Sse9I	AATT	4 cut(s)	19, 489, 518, 813
SsiI	CCGC	3 cut(s)	65, 431, 594
SspMI	CTAG	2 cut(s)	260, 398
StyD4I	CCNGG	3 cut(s)	79, 384, 631
StyI	CCWWGG	1 cut(s)	501
TaaI	ACNGT	1 cut(s)	76
TaqI	TCGA	5 cut(s)	297, 318, 756, 774, 784
TasI	AATT	4 cut(s)	19, 489, 518, 813
TatI	WGTACW	1 cut(s)	213
TauI	GCSGC	2 cut(s)	434, 597
TfiI	GAWTC	4 cut(s)	256, 391, 642, 809
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TscAI	CASTG	8 cut(s)	61, 223, 288, 451, 579, 604, 720, 796
TseFI	GTSAC	1 cut(s)	649
TseI	GCWGC	1 cut(s)	275
Tsp45I	GTSAC	1 cut(s)	649
TspDTI	ATGAA	1 cut(s)	162
TspRI	CASTG	8 cut(s)	61, 223, 288, 451, 579, 604, 720, 796
XbaI	TCTAGA	1 cut(s)	259
XceI	RCATGY	1 cut(s)	410
XspI	CTAG	2 cut(s)	260, 398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.