Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001188

Physical Location & Seq

Genomic Coordinates Forward (+)

68171199 .. 68172962

Gene Structure 1764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0554700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGAGATCTCAAGAGTTGACAAGAAATTCGGTACTAAGCCTTCATCCCAGTCGGAAGGAGTTGTTCATTGGCTTCATACAGGGCTGAGTCACTCCGCTGGTCGTGCTGGAAAACCAATTGTGAAATGGATTCAGAAGTTCCCAGCCGCGTCAAAGACTCAGTTAAGGAATAAAGTGCGAGAGATGTCAGATTTTGTGGATACCCATTGGCAGGAGATGAAGATAACACTCGAGAAAGTGATGGATACAGTGACTTGGATGAAGTTGGATCAATATGTGGCTAGGAGCATGAAGGTTAATTATGTGGTAGGCTCCTACCTTGATCCCCTTATAGTTAAGGCTTTTGGTGCAGGTATACTGATCAGACACATGTTCAAGGATAGTCCATATGCCTTTGGTTCTCCATCAAAAGCCGTCTGCATTATTGATCTTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N ADH_zinc_N_2

Protein Analysis

145

Amino Acids

16.41

Weight (kDa)

9.68

Isoelectric Point (pI)

31.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cac1_C	PF21796	45 - 71	1.9e-07	Chromatin assembly factor 1 subunit Cac1, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23740
fragaria_vesca	FvH4_4g34500 FvH4_6g50700
malus_domestica	MD09G1033200.v1.1 MD09G1033600.v1.1 MD09G1033700.v1.1 MD09G1034000.v1.1 MD13G1092200.v1.1 MD16G1092800.v1.1
prunus_persica	Prupe.1G253500_v2.0.a1 Prupe.3G284300_v2.0.a1 Prupe.3G284400_v2.0.a1 Prupe.3G284700_v2.0.a1 Prupe.3G284800_v2.0.a1 Prupe.3G284900_v2.0.a1
pyrus_communis	pycom111g02680 pycom111g02700 pycom13g08010 pycom16g07920
rosa_chinensis	RchiOBHm_Chr2g0171461 RchiOBHm_Chr2g0171481 RchiOBHm_Chr2g0171491 RchiOBHm_Chr2g0172531 RchiOBHm_Chr4g0443881
rosa_laevigata	RLG00000005881 RLG00000022016 RLG00000022019 RLG00000022020 RLG00000022113 RLG00000023107
rosa_multiflora	Rmu_sc0000912.1_g000009 Rmu_sc0006783.1_g000002 Rmu_sc0006783.1_g000005 Rmu_sc0010179.1_g000003 Rmu_sc0019062.1_g000006
rosa_roxburghii	Rroxscaffold_2G00080590 Rroxscaffold_2G00080610 Rroxscaffold_2G00080630 Rroxscaffold_5G00384440
rosa_rugosa	Rorug02G0554600 Rorug02G0554700 Rorug02G0554800 Rorug04G0348000
rosa_samantha	Rh2AG628800 Rh2AG629000 Rh2BG639300 Rh2BG639500 Rh2BG639600 Rh2CG607900 Rh2CG608100 Rh2CG608200 Rh2CG615900 Rh4DG414600
rosa_wichuraiana	Rw2G052090 Rw2G052100 Rw2G052590 Rw4G035080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	341
AccI	GTMKAC	1 cut(s)	355
AccII	CGCG	1 cut(s)	149
AciI	CCGC	2 cut(s)	96, 147
AclWI	GGATC	2 cut(s)	276, 317
AcsI	RAATTY	1 cut(s)	26
AfaI	GTAC	1 cut(s)	34
AfiI	CCNNNNNNNGG	1 cut(s)	211
AflIII	ACRYGT	1 cut(s)	369
AgsI	TTSAA	1 cut(s)	376
AlwI	GGATC	2 cut(s)	276, 317
Ama87I	CYCGRG	1 cut(s)	230
ApoI	RAATTY	1 cut(s)	26
ArsI	GACNNNNNNTTYG	2 cut(s)	11, 43
AvaI	CYCGRG	1 cut(s)	230
BarI	GAAGNNNNNNTAC	2 cut(s)	25, 57
BccI	CCATC	2 cut(s)	235, 412
BceAI	ACGGC	1 cut(s)	398
BciVI	GTATCC	2 cut(s)	193, 238
BclI	TGATCA	1 cut(s)	360
BfaI	CTAG	1 cut(s)	282
BfuAI	ACCTGC	1 cut(s)	341
BfuI	GTATCC	2 cut(s)	193, 238
BglII	AGATCT	1 cut(s)	6
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
BmeT110I	CYCGRG	1 cut(s)	230
BmiI	GGNNCC	1 cut(s)	313
BmrI	ACTGGG	1 cut(s)	43
BmuI	ACTGGG	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
Bse1I	ACTGG	1 cut(s)	49
BseGI	GGATG	2 cut(s)	44, 264
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseMII	CTCAG	2 cut(s)	77, 173
BseNI	ACTGG	1 cut(s)	49
BseYI	CCCAGC	1 cut(s)	142
BsgI	GTGCAG	1 cut(s)	369
Bsh1236I	CGCG	1 cut(s)	149
BsiHKCI	CYCGRG	1 cut(s)	230
BslI	CCNNNNNNNGG	1 cut(s)	211
BsoBI	CYCGRG	1 cut(s)	230
Bsp143I	GATC	5 cut(s)	6, 268, 322, 360, 427
BspACI	CCGC	2 cut(s)	96, 147
BspCNI	CTCAG	2 cut(s)	78, 172
BspFNI	CGCG	1 cut(s)	149
BspLI	GGNNCC	1 cut(s)	313
BspMI	ACCTGC	1 cut(s)	341
BspPI	GGATC	2 cut(s)	276, 317
BsrI	ACTGG	1 cut(s)	49
BssMI	GATC	5 cut(s)	6, 268, 322, 360, 427
BssNAI	GTATAC	1 cut(s)	356
Bst1107I	GTATAC	1 cut(s)	356
Bst4CI	ACNGT	1 cut(s)	250
BstDEI	CTNAG	3 cut(s)	36, 86, 159
BstF5I	GGATG	2 cut(s)	44, 264
BstFNI	CGCG	1 cut(s)	149
BstKTI	GATC	5 cut(s)	9, 271, 325, 363, 430
BstMBI	GATC	5 cut(s)	6, 268, 322, 360, 427
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 347
BstNSI	RCATGY	1 cut(s)	373
BstUI	CGCG	1 cut(s)	149
BstX2I	RGATCY	1 cut(s)	6
BstYI	RGATCY	1 cut(s)	6
BstZ17I	GTATAC	1 cut(s)	356
BsuI	GTATCC	2 cut(s)	193, 238
BtsCI	GGATG	2 cut(s)	44, 264
BtsIMutI	CAGTG	1 cut(s)	255
BveI	ACCTGC	1 cut(s)	341
CseI	GACGC	1 cut(s)	138
Csp6I	GTAC	1 cut(s)	33
CviAII	CATG	2 cut(s)	289, 370
CviJI	RGCY	8 cut(s)	40, 73, 85, 146, 281, 312, 341, 413
CviKI_1	RGCY	8 cut(s)	40, 73, 85, 146, 281, 312, 341, 413
CviQI	GTAC	1 cut(s)	33
DdeI	CTNAG	3 cut(s)	36, 86, 159
DpnI	GATC	5 cut(s)	8, 270, 324, 362, 429
DpnII	GATC	5 cut(s)	6, 268, 322, 360, 427
Eco88I	CYCGRG	1 cut(s)	230
FaeI	CATG	2 cut(s)	292, 373
FaiI	YATR	9 cut(s)	78, 276, 290, 303, 332, 356, 371, 388, 390
FatI	CATG	2 cut(s)	288, 369
FauNDI	CATATG	1 cut(s)	388
FbaI	TGATCA	1 cut(s)	360
FblI	GTMKAC	1 cut(s)	355
Fnu4HI	GCNGC	1 cut(s)	147
FokI	GGATG	2 cut(s)	31, 271
Fsp4HI	GCNGC	1 cut(s)	147
FspBI	CTAG	1 cut(s)	282
GluI	GCNGC	1 cut(s)	147
GsaI	CCCAGC	1 cut(s)	146
HgaI	GACGC	1 cut(s)	138
Hin1II	CATG	2 cut(s)	292, 373
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HinfI	GANTC	3 cut(s)	88, 130, 157
Hpy166II	GTNNAC	2 cut(s)	19, 356
Hpy188I	TCNGA	4 cut(s)	55, 135, 190, 365
Hpy188III	TCNNGA	2 cut(s)	12, 232
Hpy8I	GTNNAC	2 cut(s)	19, 356
HpyAV	CCTTC	3 cut(s)	50, 51, 286
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4V	TGCA	2 cut(s)	350, 420
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 347
HpyF3I	CTNAG	3 cut(s)	36, 86, 159
Hsp92II	CATG	2 cut(s)	292, 373
Ksp22I	TGATCA	1 cut(s)	360
Kzo9I	GATC	5 cut(s)	6, 268, 322, 360, 427
LmnI	GCTCC	2 cut(s)	285, 317
LpnPI	CCDG	7 cut(s)	62, 66, 84, 93, 156, 197, 336
MaeI	CTAG	1 cut(s)	282
MaeIII	GTNAC	2 cut(s)	89, 250
MalI	GATC	5 cut(s)	8, 270, 324, 362, 429
MboI	GATC	5 cut(s)	6, 268, 322, 360, 427
MboII	GAAGA	1 cut(s)	232
MfeI	CAATTG	1 cut(s)	117
MflI	RGATCY	1 cut(s)	6
MluCI	AATT	4 cut(s)	26, 117, 298, 433
MlyI	GAGTC	2 cut(s)	97, 151
MmeI	TCCRAC	2 cut(s)	33, 246
MseI	TTAA	4 cut(s)	164, 297, 336, 432
MspA1I	CMGCKG	1 cut(s)	98
MunI	CAATTG	1 cut(s)	117
MvnI	CGCG	1 cut(s)	149
MwoI	GCNNNNNNNGC	2 cut(s)	104, 347
NdeI	CATATG	1 cut(s)	388
NdeII	GATC	5 cut(s)	6, 268, 322, 360, 427
NlaIII	CATG	2 cut(s)	292, 373
NlaIV	GGNNCC	1 cut(s)	313
NmuCI	GTSAC	2 cut(s)	89, 250
NspI	RCATGY	1 cut(s)	373
PaeR7I	CTCGAG	1 cut(s)	230
PciI	ACATGT	1 cut(s)	369
PfeI	GAWTC	1 cut(s)	130
PkrI	GCNGC	1 cut(s)	148
PleI	GAGTC	2 cut(s)	96, 151
PpsI	GAGTC	2 cut(s)	96, 151
PscI	ACATGT	1 cut(s)	369
PspFI	CCCAGC	1 cut(s)	142
PspN4I	GGNNCC	1 cut(s)	313
PsuI	RGATCY	1 cut(s)	6
RsaI	GTAC	1 cut(s)	34
RsaNI	GTAC	1 cut(s)	33
SaqAI	TTAA	4 cut(s)	164, 297, 336, 432
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	5 cut(s)	6, 268, 322, 360, 427
SchI	GAGTC	2 cut(s)	97, 151
SetI	ASST	3 cut(s)	297, 321, 355
Sfr274I	CTCGAG	1 cut(s)	230
SlaI	CTCGAG	1 cut(s)	230
SmlI	CTYRAG	2 cut(s)	10, 230
SmoI	CTYRAG	2 cut(s)	10, 230
Sse9I	AATT	4 cut(s)	26, 117, 298, 433
SsiI	CCGC	2 cut(s)	96, 147
SspMI	CTAG	1 cut(s)	282
TaaI	ACNGT	1 cut(s)	250
TaqI	TCGA	1 cut(s)	231
TasI	AATT	4 cut(s)	26, 117, 298, 433
TauI	GCSGC	1 cut(s)	149
TfiI	GAWTC	1 cut(s)	130
Tru1I	TTAA	4 cut(s)	164, 297, 336, 432
Tru9I	TTAA	4 cut(s)	164, 297, 336, 432
TscAI	CASTG	1 cut(s)	255
TseFI	GTSAC	2 cut(s)	89, 250
Tsp45I	GTSAC	2 cut(s)	89, 250
TspDTI	ATGAA	6 cut(s)	33, 56, 65, 233, 275, 305
TspRI	CASTG	1 cut(s)	255
XapI	RAATTY	1 cut(s)	26
XceI	RCATGY	1 cut(s)	373
XcmI	CCANNNNNNNNNTGG	1 cut(s)	123
XhoI	CTCGAG	1 cut(s)	230
XmiI	GTMKAC	1 cut(s)	355
XspI	CTAG	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.