Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001188

Physical Location & Seq

Genomic Coordinates Forward (+)

37684958 .. 37687209

Gene Structure 2252 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g50700.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGCTGCAGCTCCAAGTGAGTCCATACCCTCTGTAAATAAGGCCTGGGTCTATTCAGAGTATGGAAAAACTTCTGATGTTCTCAAGTTTGATCCAAGTGTGGCTGTTCCTGAAATTAAAGAGGATCAGGTGCTGATCAAGGTTGTTGCTGCTTCTCTTAACCCAGTTGATTTTAAGAGGGCTCTTGGTTACTTCAAGGACACTGACTCTCCCCTACCTACAATTCCAGGGTATGATGTAGCTGGTGTGGTGGTAAAGGTAGGAAGCCAAGTAACCAAGTTTAAGGTGGGGGATGAAGTGTATGGGGATCTCAATGAGACAGCATTGGTGAACCCAACAAGGTTTGGGTCTTTGGCAGAGTACACTGCTGCAGATGAAAGAGTATTGGCTCACAAACCCAAAAACCTGAGCTTTATTGAAGCTGCTAGCCTTCCCTTGGCTATTGAAACTGCCCATGAAGGGCTTGAAAGAGCTGAACTTTCTGCTGGTAAATCCGTCCTTGTTTTGGGAGGCGCTGGGGGTGTTGGAACACATATTATTCAGCTTGCAAAGCATGTTTATGGGGCTTCCAAAGTAGCAGCTACTGCAAGCACTAAGAAACTGGATTTGTTGAGAACCTTGGGTGCTGATTTGGCTATCGATTACACCAAGGAGAACTTCGAGGACCTGCCAGAGAAATTTGATGTAGTGTATGATGCAGTTGGGGAGACAGATAAGGCTGTGAAGGCGGTGAAAGAAGGTGGGAAGGTTGTAACAATAGTAGGTCCAGCAACGCCACCGGCTATCCTTTTTGTGCTTACCTCTAAAGGGTCTGTGTTGGAGAAACTGAAGCCTTACTTGGAGAGTGGGAAGGTGAAGCCAGTTCTTGATCCCACAAGTCCATATCCCTTTACTAAAGTTGTTGAAGCATTTGGTTACCTTGAGAGTTCCAGAGCTACCGGAAAGGTGGTTGTGTATCCCATCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N ADH_zinc_N_2

Protein Analysis

323

Amino Acids

34.19

Weight (kDa)

5.73

Isoelectric Point (pI)

22.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	41 - 133	1.6e-17	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	174 - 259	8.7e-14	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	207 - 318	9.4e-21	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23740
fragaria_vesca	FvH4_4g34500 FvH4_6g50700
malus_domestica	MD09G1033200.v1.1 MD09G1033600.v1.1 MD09G1033700.v1.1 MD09G1034000.v1.1 MD13G1092200.v1.1 MD16G1092800.v1.1
prunus_persica	Prupe.1G253500_v2.0.a1 Prupe.3G284300_v2.0.a1 Prupe.3G284400_v2.0.a1 Prupe.3G284700_v2.0.a1 Prupe.3G284800_v2.0.a1 Prupe.3G284900_v2.0.a1
pyrus_communis	pycom111g02680 pycom111g02700 pycom13g08010 pycom16g07920
rosa_chinensis	RchiOBHm_Chr2g0171461 RchiOBHm_Chr2g0171481 RchiOBHm_Chr2g0171491 RchiOBHm_Chr2g0172531 RchiOBHm_Chr4g0443881
rosa_laevigata	RLG00000005881 RLG00000022016 RLG00000022019 RLG00000022020 RLG00000022113 RLG00000023107
rosa_multiflora	Rmu_sc0000912.1_g000009 Rmu_sc0006783.1_g000002 Rmu_sc0006783.1_g000005 Rmu_sc0010179.1_g000003 Rmu_sc0019062.1_g000006
rosa_roxburghii	Rroxscaffold_2G00080590 Rroxscaffold_2G00080610 Rroxscaffold_2G00080630 Rroxscaffold_5G00384440
rosa_rugosa	Rorug02G0554600 Rorug02G0554700 Rorug02G0554800 Rorug04G0348000
rosa_samantha	Rh2AG628800 Rh2AG629000 Rh2BG639300 Rh2BG639500 Rh2BG639600 Rh2CG607900 Rh2CG608100 Rh2CG608200 Rh2CG615900 Rh4DG414600
rosa_wichuraiana	Rw2G052090 Rw2G052100 Rw2G052590 Rw4G035080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	675
AciI	CCGC	1 cut(s)	728
AclWI	GGATC	4 cut(s)	86, 132, 315, 863
AcsI	RAATTY	1 cut(s)	677
AcuI	CTGAAG	1 cut(s)	848
AfaI	GTAC	1 cut(s)	362
AfiI	CCNNNNNNNGG	4 cut(s)	436, 459, 505, 807
AgsI	TTSAA	5 cut(s)	196, 419, 446, 467, 905
AjnI	CCWGG	2 cut(s)	44, 226
AjuI	GAANNNNNNNTTGG	4 cut(s)	641, 673, 821, 853
AluBI	AGCT	8 cut(s)	11, 242, 411, 422, 473, 544, 581, 935
AluI	AGCT	8 cut(s)	11, 242, 411, 422, 473, 544, 581, 935
Alw26I	GTCTC	2 cut(s)	311, 701
AlwI	GGATC	4 cut(s)	86, 132, 315, 863
AlwNI	CAGNNNCTG	2 cut(s)	133, 584
AoxI	GGCC	1 cut(s)	42
ApeKI	GCWGC	6 cut(s)	5, 8, 149, 368, 422, 578
ApoI	RAATTY	1 cut(s)	677
Asp700I	GAANNNNTTC	1 cut(s)	70
AspLEI	GCGC	1 cut(s)	515
AspS9I	GGNCC	2 cut(s)	664, 764
AsuHPI	GGTGA	3 cut(s)	340, 742, 865
AsuNHI	GCTAGC	1 cut(s)	425
AvaII	GGWCC	2 cut(s)	664, 764
BanII	GRGCYC	1 cut(s)	184
BbvI	GCAGC	5 cut(s)	20, 136, 355, 409, 590
BccI	CCATC	1 cut(s)	968
BciT130I	CCWGG	2 cut(s)	46, 228
BciVI	GTATCC	1 cut(s)	966
BclI	TGATCA	1 cut(s)	135
BcoDI	GTCTC	2 cut(s)	311, 701
BfaI	CTAG	1 cut(s)	426
BfmI	CTRYAG	2 cut(s)	6, 369
BfoI	RGCGCY	1 cut(s)	516
BfuAI	ACCTGC	1 cut(s)	675
BfuI	GTATCC	1 cut(s)	966
BisI	GCNGC	6 cut(s)	6, 9, 150, 369, 423, 579
BlsI	GCNGC	6 cut(s)	7, 10, 151, 370, 424, 580
Bme1390I	CCNGG	2 cut(s)	46, 228
Bme18I	GGWCC	2 cut(s)	664, 764
BmgT120I	GGNCC	2 cut(s)	664, 764
BmrFI	CCNGG	2 cut(s)	46, 228
BmrI	ACTGGG	1 cut(s)	158
BmsI	GCATC	1 cut(s)	685
BmtI	GCTAGC	1 cut(s)	429
BmuI	ACTGGG	1 cut(s)	158
Bpu10I	CCTNAGC	1 cut(s)	407
BpuEI	CTTGAG	2 cut(s)	68, 941
Bsa29I	ATCGAT	1 cut(s)	639
BsaJI	CCNNGG	5 cut(s)	45, 227, 435, 618, 648
BsaWI	WCCGGW	1 cut(s)	938
BsaXI	ACNNNNNCTCC	2 cut(s)	193, 223
Bsc4I	CCNNNNNNNGG	4 cut(s)	436, 459, 505, 807
Bse118I	RCCGGY	1 cut(s)	778
Bse1I	ACTGG	3 cut(s)	164, 606, 860
BseBI	CCWGG	2 cut(s)	46, 228
BseCI	ATCGAT	1 cut(s)	639
BseDI	CCNNGG	5 cut(s)	45, 227, 435, 618, 648
BseGI	GGATG	2 cut(s)	298, 960
BseLI	CCNNNNNNNGG	4 cut(s)	436, 459, 505, 807
BseMII	CTCAG	1 cut(s)	398
BseNI	ACTGG	3 cut(s)	164, 606, 860
BseXI	GCAGC	5 cut(s)	20, 136, 355, 409, 590
BseYI	CCCAGC	1 cut(s)	515
BshFI	GGCC	1 cut(s)	44
BshVI	ATCGAT	1 cut(s)	639
BsiSI	CCGG	2 cut(s)	779, 939
BslI	CCNNNNNNNGG	4 cut(s)	436, 459, 505, 807
BsmAI	GTCTC	2 cut(s)	311, 701
BsnI	GGCC	1 cut(s)	44
Bsp1286I	GDGCHC	1 cut(s)	184
Bsp143I	GATC	5 cut(s)	91, 124, 135, 307, 868
BspACI	CCGC	1 cut(s)	728
BspANI	GGCC	1 cut(s)	44
BspCNI	CTCAG	1 cut(s)	399
BspDI	ATCGAT	1 cut(s)	639
BspMAI	CTGCAG	2 cut(s)	10, 373
BspMI	ACCTGC	1 cut(s)	675
BspOI	GCTAGC	1 cut(s)	429
BspPI	GGATC	4 cut(s)	86, 132, 315, 863
BsrFI	RCCGGY	1 cut(s)	778
BsrI	ACTGG	3 cut(s)	164, 606, 860
BssAI	RCCGGY	1 cut(s)	778
BssECI	CCNNGG	5 cut(s)	45, 227, 435, 618, 648
BssMI	GATC	5 cut(s)	91, 124, 135, 307, 868
BssT1I	CCWWGG	3 cut(s)	435, 618, 648
Bst2UI	CCWGG	2 cut(s)	46, 228
BstAPI	GCANNNNNTGC	1 cut(s)	584
BstC8I	GCNNGC	3 cut(s)	427, 546, 589
BstDEI	CTNAG	2 cut(s)	407, 594
BstEII	GGTNACC	1 cut(s)	914
BstF5I	GGATG	2 cut(s)	298, 960
BstH2I	RGCGCY	1 cut(s)	516
BstHHI	GCGC	1 cut(s)	515
BstKTI	GATC	5 cut(s)	94, 127, 138, 310, 871
BstMAI	GTCTC	2 cut(s)	311, 701
BstMBI	GATC	5 cut(s)	91, 124, 135, 307, 868
BstMWI	GCNNNNNNNGC	4 cut(s)	550, 584, 632, 725
BstNI	CCWGG	2 cut(s)	46, 228
BstNSI	RCATGY	1 cut(s)	557
BstPI	GGTNACC	1 cut(s)	914
BstSCI	CCNGG	2 cut(s)	44, 226
BstSFI	CTRYAG	2 cut(s)	6, 369
BstV1I	GCAGC	5 cut(s)	20, 136, 355, 409, 590
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
Bsu15I	ATCGAT	1 cut(s)	639
BsuI	GTATCC	1 cut(s)	966
BsuRI	GGCC	1 cut(s)	44
BsuTUI	ATCGAT	1 cut(s)	639
BtsCI	GGATG	2 cut(s)	298, 960
BtsI	GCAGTG	1 cut(s)	363
BtsIMutI	CAGTG	2 cut(s)	201, 363
BveI	ACCTGC	1 cut(s)	675
Cac8I	GCNNGC	3 cut(s)	427, 546, 589
CaiI	CAGNNNCTG	2 cut(s)	133, 584
CfoI	GCGC	1 cut(s)	515
Cfr10I	RCCGGY	1 cut(s)	778
Cfr13I	GGNCC	2 cut(s)	664, 764
ClaI	ATCGAT	1 cut(s)	639
Csp6I	GTAC	1 cut(s)	361
CviAII	CATG	3 cut(s)	455, 554, 966
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	2 cut(s)	407, 594
DpnI	GATC	5 cut(s)	93, 126, 137, 309, 870
DpnII	GATC	5 cut(s)	91, 124, 135, 307, 868
Eco130I	CCWWGG	3 cut(s)	435, 618, 648
Eco147I	AGGCCT	1 cut(s)	44
Eco24I	GRGCYC	1 cut(s)	184
Eco47I	GGWCC	2 cut(s)	664, 764
Eco57I	CTGAAG	1 cut(s)	848
Eco91I	GGTNACC	1 cut(s)	914
EcoO109I	RGGNCCY	1 cut(s)	664
EcoO65I	GGTNACC	1 cut(s)	914
EcoRII	CCWGG	2 cut(s)	44, 226
EcoT14I	CCWWGG	3 cut(s)	435, 618, 648
EcoT38I	GRGCYC	1 cut(s)	184
ErhI	CCWWGG	3 cut(s)	435, 618, 648
FaeI	CATG	3 cut(s)	458, 557, 969
FalI	AAGNNNNNCTT	4 cut(s)	641, 673, 821, 853
FatI	CATG	3 cut(s)	454, 553, 965
FbaI	TGATCA	1 cut(s)	135
Fnu4HI	GCNGC	6 cut(s)	6, 9, 150, 369, 423, 579
FokI	GGATG	2 cut(s)	305, 947
FriOI	GRGCYC	1 cut(s)	184
Fsp4HI	GCNGC	6 cut(s)	6, 9, 150, 369, 423, 579
FspBI	CTAG	1 cut(s)	426
GlaI	GCGC	1 cut(s)	514
GluI	GCNGC	6 cut(s)	6, 9, 150, 369, 423, 579
GsaI	CCCAGC	1 cut(s)	519
HaeII	RGCGCY	1 cut(s)	516
HaeIII	GGCC	1 cut(s)	44
HapII	CCGG	2 cut(s)	779, 939
HhaI	GCGC	1 cut(s)	515
Hin1II	CATG	3 cut(s)	458, 557, 969
Hin6I	GCGC	1 cut(s)	513
HinP1I	GCGC	1 cut(s)	513
HinfI	GANTC	2 cut(s)	20, 206
HpaII	CCGG	2 cut(s)	779, 939
HphI	GGTGA	3 cut(s)	340, 742, 865
Hpy166II	GTNNAC	2 cut(s)	331, 363
Hpy188I	TCNGA	2 cut(s)	58, 76
Hpy188III	TCNNGA	3 cut(s)	110, 866, 930
Hpy8I	GTNNAC	2 cut(s)	331, 363
HpyAV	CCTTC	6 cut(s)	440, 452, 718, 731, 739, 844
HpyCH4V	TGCA	5 cut(s)	8, 371, 548, 587, 698
HpyF10VI	GCNNNNNNNGC	4 cut(s)	550, 584, 632, 725
HpyF3I	CTNAG	2 cut(s)	407, 594
Hsp92II	CATG	3 cut(s)	458, 557, 969
HspAI	GCGC	1 cut(s)	513
Ksp22I	TGATCA	1 cut(s)	135
Kzo9I	GATC	5 cut(s)	91, 124, 135, 307, 868
LmnI	GCTCC	1 cut(s)	16
Lsp1109I	GCAGC	5 cut(s)	20, 136, 355, 409, 590
LweI	GCATC	1 cut(s)	685
MaeI	CTAG	1 cut(s)	426
MaeIII	GTNAC	4 cut(s)	188, 271, 751, 914
MalI	GATC	5 cut(s)	93, 126, 137, 309, 870
MboI	GATC	5 cut(s)	91, 124, 135, 307, 868
MflI	RGATCY	1 cut(s)	307
MhlI	GDGCHC	1 cut(s)	184
MluCI	AATT	3 cut(s)	114, 222, 677
MlyI	GAGTC	2 cut(s)	29, 200
MmeI	TCCRAC	2 cut(s)	505, 798
MnlI	CCTC	6 cut(s)	40, 115, 171, 503, 655, 811
MroXI	GAANNNNTTC	1 cut(s)	70
MseI	TTAA	4 cut(s)	117, 159, 174, 282
MslI	CAYNNNNRTG	1 cut(s)	558
MspI	CCGG	2 cut(s)	779, 939
MspR9I	CCNGG	2 cut(s)	46, 228
MvaI	CCWGG	2 cut(s)	46, 228
MwoI	GCNNNNNNNGC	4 cut(s)	550, 584, 632, 725
NdeII	GATC	5 cut(s)	91, 124, 135, 307, 868
NheI	GCTAGC	1 cut(s)	425
NlaIII	CATG	3 cut(s)	458, 557, 969
NspI	RCATGY	1 cut(s)	557
PceI	AGGCCT	1 cut(s)	44
PdmI	GAANNNNTTC	1 cut(s)	70
PkrI	GCNGC	6 cut(s)	7, 10, 151, 370, 424, 580
PleI	GAGTC	2 cut(s)	28, 200
PpsI	GAGTC	2 cut(s)	28, 200
PpuMI	RGGWCCY	1 cut(s)	664
Psp5II	RGGWCCY	1 cut(s)	664
Psp6I	CCWGG	2 cut(s)	44, 226
PspEI	GGTNACC	1 cut(s)	914
PspFI	CCCAGC	1 cut(s)	515
PspGI	CCWGG	2 cut(s)	44, 226
PspPI	GGNCC	2 cut(s)	664, 764
PspPPI	RGGWCCY	1 cut(s)	664
PstI	CTGCAG	2 cut(s)	10, 373
PstNI	CAGNNNCTG	2 cut(s)	133, 584
PsuI	RGATCY	1 cut(s)	307
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
RseI	CAYNNNNRTG	1 cut(s)	558
SaqAI	TTAA	4 cut(s)	117, 159, 174, 282
SatI	GCNGC	6 cut(s)	6, 9, 150, 369, 423, 579
Sau3AI	GATC	5 cut(s)	91, 124, 135, 307, 868
Sau96I	GGNCC	2 cut(s)	664, 764
SchI	GAGTC	2 cut(s)	29, 200
ScrFI	CCNGG	2 cut(s)	46, 228
SduI	GDGCHC	1 cut(s)	184
SfaNI	GCATC	1 cut(s)	685
SfcI	CTRYAG	2 cut(s)	6, 369
SinI	GGWCC	2 cut(s)	664, 764
SmiMI	CAYNNNNRTG	1 cut(s)	558
SmlI	CTYRAG	2 cut(s)	83, 920
SmoI	CTYRAG	2 cut(s)	83, 920
Sse9I	AATT	3 cut(s)	114, 222, 677
SseBI	AGGCCT	1 cut(s)	44
SsiI	CCGC	1 cut(s)	728
SspMI	CTAG	1 cut(s)	426
StuI	AGGCCT	1 cut(s)	44
StyD4I	CCNGG	2 cut(s)	44, 226
StyI	CCWWGG	3 cut(s)	435, 618, 648
TaqI	TCGA	2 cut(s)	639, 660
TasI	AATT	3 cut(s)	114, 222, 677
TatI	WGTACW	1 cut(s)	360
Tru1I	TTAA	4 cut(s)	117, 159, 174, 282
Tru9I	TTAA	4 cut(s)	117, 159, 174, 282
TscAI	CASTG	2 cut(s)	208, 370
TseI	GCWGC	6 cut(s)	5, 8, 149, 368, 422, 578
TspDTI	ATGAA	3 cut(s)	309, 390, 471
TspGWI	ACGGA	1 cut(s)	484
TspRI	CASTG	2 cut(s)	208, 370
VpaK11BI	GGWCC	2 cut(s)	664, 764
XapI	RAATTY	1 cut(s)	677
XceI	RCATGY	1 cut(s)	557
XcmI	CCANNNNNNNNNTGG	1 cut(s)	283
XmnI	GAANNNNTTC	1 cut(s)	70
XspI	CTAG	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.