Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0001188

Physical Location & Seq

Genomic Coordinates Forward (+)

5324119 .. 5326107

Gene Structure 1989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g08010.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGTTAACCACCACCGCCGCTCTCACCGCCACTGCTTCTAAACTCACATCCCCAAACCAAATTTCTCCCAGATTTTCCTTCACTTTCCGGGAAAATAACAACAGAATCGCAGTACCCAAAAGCTCGACCACCCAAAGATCCAAGCTTTCAGCTGGTTTTCCCGCTCTGAGAGTGTCTGCTAGTTCCCAGTCTGCCCCTGCTTCGGCTGAGGAGTCAAAGGTCACGGTTCTGCCGTCGGAGATGAAGGCGTGGGTTTATGGGGAATACGGGGGTGTTGATGTTTTGAAGTTCGACACCAAGGTTGCGGTTCCTGAGTTGCTGGAGGACCAGGTTCTGGTTAAGGTTGTCGCTGCGGCTCTCAACCCGGTTGACTTCAAGAGGAGGCAGGGCAAGTTCAAGAACACTGATTCTCCTCTTCCGACTGTTCCAGGCTATGATGTTGCCGGCGTGGTGGTGAAGGTTGGCAGTAAAGTGAAGGACTTTAAAGAGGGGGATGAAGTGTATGGAGACATACATGAGAAAGCTTTGGAAGGGCCTAAACAATCTGGCTCTCTTGCAGAGTACACTGCTGTTGAAGAGAGGTTACTGGCACCAAAGCCTAAGAATTTGGATTTTGCTCAGGCTGCTTCACTTCCTCTTGCAATCGAGACAGCTTATGAGGGTCTTGAAAAGACCGGGTTTTCTGCCGGTAAATCTTTGCTTGTTCTGAATGGTGCTGGTGGAGTTGGAAGCCTGGTGATTCAGGTACCAATTCTCTCTTCCGCCCATGATTGCAAACTGAAAGCATTGCTTGACAAAATCATATCAGCCACTTCAAGCACTGGAAAGCTGGAGTTATTGAAGAGCTTGGGTGCTGATTTAGCGATCGACTACACTAAGGAGAACTTGGAAGAATTGCCGGAAAAATTTGATGTCGTCTATGATGCTATTGGTCAATGTGACAAAGCAGTGAAGGTGGTGAAAGAAGGGGGCAGTGTAGTGGCCTTAACAGGTGCAGTAACACCTCCGGGTTTCAGATTCGTAGTTACTTCCAACGGAGCAGTTCTGAAGAAACTAAACCCGTACTTGGAGAGTGGGAAGGTGAAGCCAGTGATAGACCCCAAAGGGCCCTTCCCCTTCTCCAAGCTTGTGGAGGCTTTCTCTTACCTTGAAACAAATCGGGCCACTGGAAAGGTAGTCATACATCCAATTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009941 GO:0010319 GO:0016491 GO:0016627 GO:0016628 GO:0031967 GO:0031975 GO:0035671 GO:0035798 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

399

Amino Acids

42.33

Weight (kDa)

8.52

Isoelectric Point (pI)

27.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23740
fragaria_vesca	FvH4_4g34500 FvH4_6g50700
malus_domestica	MD09G1033200.v1.1 MD09G1033600.v1.1 MD09G1033700.v1.1 MD09G1034000.v1.1 MD13G1092200.v1.1 MD16G1092800.v1.1
prunus_persica	Prupe.1G253500_v2.0.a1 Prupe.3G284300_v2.0.a1 Prupe.3G284400_v2.0.a1 Prupe.3G284700_v2.0.a1 Prupe.3G284800_v2.0.a1 Prupe.3G284900_v2.0.a1
pyrus_communis	pycom111g02680 pycom111g02700 pycom13g08010 pycom16g07920
rosa_chinensis	RchiOBHm_Chr2g0171461 RchiOBHm_Chr2g0171481 RchiOBHm_Chr2g0171491 RchiOBHm_Chr2g0172531 RchiOBHm_Chr4g0443881
rosa_laevigata	RLG00000005881 RLG00000022016 RLG00000022019 RLG00000022020 RLG00000022113 RLG00000023107
rosa_multiflora	Rmu_sc0000912.1_g000009 Rmu_sc0006783.1_g000002 Rmu_sc0006783.1_g000005 Rmu_sc0010179.1_g000003 Rmu_sc0019062.1_g000006
rosa_roxburghii	Rroxscaffold_2G00080590 Rroxscaffold_2G00080610 Rroxscaffold_2G00080630 Rroxscaffold_5G00384440
rosa_rugosa	Rorug02G0554600 Rorug02G0554700 Rorug02G0554800 Rorug04G0348000
rosa_samantha	Rh2AG628800 Rh2AG629000 Rh2BG639300 Rh2BG639500 Rh2BG639600 Rh2CG607900 Rh2CG608100 Rh2CG608200 Rh2CG615900 Rh4DG414600
rosa_wichuraiana	Rw2G052090 Rw2G052100 Rw2G052590 Rw4G035080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	745
AccB1I	GGYRCC	2 cut(s)	589, 745
AccB7I	CCANNNNNTGG	1 cut(s)	334
AccBSI	CCGCTC	2 cut(s)	20, 164
AciI	CCGC	7 cut(s)	15, 18, 27, 162, 305, 353, 762
AclWI	GGATC	1 cut(s)	132
AcsI	RAATTY	3 cut(s)	60, 604, 905
AcuI	CTGAAG	1 cut(s)	1067
AfaI	GTAC	4 cut(s)	114, 563, 747, 1064
AfiI	CCNNNNNNNGG	3 cut(s)	202, 334, 1066
AgsI	TTSAA	9 cut(s)	286, 376, 397, 575, 668, 816, 841, 1151, 1193
AjnI	CCWGG	3 cut(s)	327, 427, 732
AjuI	GAANNNNNNNTTGG	6 cut(s)	46, 78, 742, 774, 1094, 1126
AluBI	AGCT	8 cut(s)	123, 145, 152, 524, 653, 829, 846, 1126
AluI	AGCT	8 cut(s)	123, 145, 152, 524, 653, 829, 846, 1126
Alw26I	GTCTC	2 cut(s)	501, 641
AlwI	GGATC	1 cut(s)	132
AlwNI	CAGNNNCTG	1 cut(s)	334
AoxI	GGCC	4 cut(s)	533, 981, 1106, 1161
ApaI	GGGCCC	1 cut(s)	1110
ApeKI	GCWGC	2 cut(s)	350, 623
ApoI	RAATTY	3 cut(s)	60, 604, 905
Asp718I	GGTACC	1 cut(s)	745
AspS9I	GGNCC	5 cut(s)	325, 533, 1106, 1107, 1161
AsuC2I	CCSGG	4 cut(s)	89, 365, 676, 1008
AsuHPI	GGTGA	5 cut(s)	16, 466, 748, 970, 1093
AvaII	GGWCC	1 cut(s)	325
BaeGI	GKGCMC	1 cut(s)	1110
BanI	GGYRCC	2 cut(s)	589, 745
BanII	GRGCYC	1 cut(s)	1110
BarI	GAAGNNNNNNTAC	2 cut(s)	567, 599
BbvCI	CCTCAGC	1 cut(s)	207
BbvI	GCAGC	2 cut(s)	337, 610
BceAI	ACGGC	1 cut(s)	217
BciT130I	CCWGG	3 cut(s)	329, 429, 734
BcnI	CCSGG	4 cut(s)	89, 365, 676, 1008
BcoDI	GTCTC	2 cut(s)	501, 641
BfaI	CTAG	1 cut(s)	180
BisI	GCNGC	4 cut(s)	18, 351, 354, 624
BlsI	GCNGC	4 cut(s)	19, 352, 355, 625
Bme1390I	CCNGG	7 cut(s)	89, 329, 365, 429, 676, 734, 1008
Bme18I	GGWCC	1 cut(s)	325
BmgT120I	GGNCC	5 cut(s)	325, 533, 1106, 1107, 1161
BmiI	GGNNCC	4 cut(s)	309, 591, 747, 1108
BmrFI	CCNGG	7 cut(s)	89, 329, 365, 429, 676, 734, 1008
BmrI	ACTGGG	1 cut(s)	181
BmsI	GCATC	1 cut(s)	913
BmuI	ACTGGG	1 cut(s)	181
BplI	GAGNNNNNCTC	2 cut(s)	1124, 1156
BpmI	CTGGAG	2 cut(s)	341, 851
Bpu10I	CCTNAGC	2 cut(s)	207, 618
BpuMI	CCSGG	4 cut(s)	89, 365, 676, 1008
BsaJI	CCNNGG	1 cut(s)	297
BsaXI	ACNNNNNCTCC	2 cut(s)	394, 424
Bsc4I	CCNNNNNNNGG	3 cut(s)	202, 334, 1066
Bse118I	RCCGGY	2 cut(s)	443, 686
Bse1I	ACTGG	5 cut(s)	187, 591, 826, 1088, 1171
Bse3DI	GCAATG	1 cut(s)	785
BseBI	CCWGG	3 cut(s)	329, 429, 734
BseDI	CCNNGG	1 cut(s)	297
BseGI	GGATG	3 cut(s)	47, 499, 1183
BseLI	CCNNNNNNNGG	3 cut(s)	202, 334, 1066
BseMI	GCAATG	1 cut(s)	785
BseMII	CTCAG	4 cut(s)	158, 198, 303, 632
BseNI	ACTGG	5 cut(s)	187, 591, 826, 1088, 1171
BseRI	GAGGAG	3 cut(s)	224, 394, 402
BseSI	GKGCMC	1 cut(s)	1110
BseXI	GCAGC	2 cut(s)	337, 610
BsgI	GTGCAG	1 cut(s)	1014
Bsh1285I	CGRYCG	1 cut(s)	867
BshFI	GGCC	4 cut(s)	535, 983, 1108, 1163
BshNI	GGYRCC	2 cut(s)	589, 745
BsiEI	CGRYCG	1 cut(s)	867
BsiSI	CCGG	7 cut(s)	88, 365, 444, 675, 687, 899, 1007
BslI	CCNNNNNNNGG	3 cut(s)	202, 334, 1066
BsmAI	GTCTC	2 cut(s)	501, 641
BsnI	GGCC	4 cut(s)	535, 983, 1108, 1163
Bsp120I	GGGCCC	1 cut(s)	1106
Bsp1286I	GDGCHC	1 cut(s)	1110
Bsp143I	GATC	2 cut(s)	137, 864
BspACI	CCGC	7 cut(s)	15, 18, 27, 162, 305, 353, 762
BspANI	GGCC	4 cut(s)	535, 983, 1108, 1163
BspCNI	CTCAG	4 cut(s)	159, 199, 304, 631
BspLI	GGNNCC	4 cut(s)	309, 591, 747, 1108
BspPI	GGATC	1 cut(s)	132
BspQI	GCTCTTC	1 cut(s)	836
BspT107I	GGYRCC	2 cut(s)	589, 745
BsrBI	CCGCTC	2 cut(s)	20, 164
BsrDI	GCAATG	1 cut(s)	785
BsrFI	RCCGGY	2 cut(s)	443, 686
BsrI	ACTGG	5 cut(s)	187, 591, 826, 1088, 1171
BssAI	RCCGGY	2 cut(s)	443, 686
BssECI	CCNNGG	1 cut(s)	297
BssMI	GATC	2 cut(s)	137, 864
BssT1I	CCWWGG	1 cut(s)	297
Bst2UI	CCWGG	3 cut(s)	329, 429, 734
Bst4CI	ACNGT	2 cut(s)	226, 424
Bst6I	CTCTTC	4 cut(s)	420, 570, 763, 836
BstC8I	GCNNGC	1 cut(s)	445
BstDEI	CTNAG	6 cut(s)	167, 207, 312, 600, 618, 876
BstF5I	GGATG	3 cut(s)	47, 499, 1183
BstKTI	GATC	2 cut(s)	140, 867
BstMAI	GTCTC	2 cut(s)	501, 641
BstMBI	GATC	2 cut(s)	137, 864
BstMCI	CGRYCG	1 cut(s)	867
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 623, 860
BstNI	CCWGG	3 cut(s)	329, 429, 734
BstSCI	CCNGG	7 cut(s)	87, 327, 363, 427, 674, 732, 1006
BstSLI	GKGCMC	1 cut(s)	1110
BstV1I	GCAGC	2 cut(s)	337, 610
BstX2I	RGATCY	1 cut(s)	137
BstXI	CCANNNNNNTGG	1 cut(s)	1129
BstYI	RGATCY	1 cut(s)	137
BsuRI	GGCC	4 cut(s)	535, 983, 1108, 1163
BtsCI	GGATG	3 cut(s)	47, 499, 1183
BtsI	GCAGTG	4 cut(s)	30, 564, 954, 979
BtsIMutI	CAGTG	8 cut(s)	30, 402, 564, 819, 954, 979, 1095, 1164
Cac8I	GCNNGC	1 cut(s)	445
CaiI	CAGNNNCTG	1 cut(s)	334
Cfr10I	RCCGGY	2 cut(s)	443, 686
Cfr13I	GGNCC	5 cut(s)	325, 533, 1106, 1107, 1161
CsiI	ACCWGGT	1 cut(s)	327
Csp6I	GTAC	4 cut(s)	113, 562, 746, 1063
CviAII	CATG	2 cut(s)	515, 767
CviQI	GTAC	4 cut(s)	113, 562, 746, 1063
DdeI	CTNAG	6 cut(s)	167, 207, 312, 600, 618, 876
DpnI	GATC	2 cut(s)	139, 866
DpnII	GATC	2 cut(s)	137, 864
DraI	TTTAAA	1 cut(s)	484
Eam1104I	CTCTTC	4 cut(s)	420, 570, 763, 836
EarI	CTCTTC	4 cut(s)	420, 570, 763, 836
EciI	GGCGGA	1 cut(s)	751
Eco130I	CCWWGG	1 cut(s)	297
Eco24I	GRGCYC	1 cut(s)	1110
Eco47I	GGWCC	1 cut(s)	325
Eco57I	CTGAAG	1 cut(s)	1067
EcoO109I	RGGNCCY	3 cut(s)	533, 1106, 1107
EcoRII	CCWGG	3 cut(s)	327, 427, 732
EcoT14I	CCWWGG	1 cut(s)	297
EcoT38I	GRGCYC	1 cut(s)	1110
ErhI	CCWWGG	1 cut(s)	297
FaeI	CATG	2 cut(s)	518, 770
FalI	AAGNNNNNCTT	4 cut(s)	774, 806, 869, 901
FatI	CATG	2 cut(s)	514, 766
FauI	CCCGC	1 cut(s)	169
Fnu4HI	GCNGC	4 cut(s)	18, 351, 354, 624
FokI	GGATG	3 cut(s)	34, 506, 1170
FriOI	GRGCYC	1 cut(s)	1110
Fsp4HI	GCNGC	4 cut(s)	18, 351, 354, 624
FspBI	CTAG	1 cut(s)	180
GluI	GCNGC	4 cut(s)	18, 351, 354, 624
GsuI	CTGGAG	2 cut(s)	341, 851
HaeIII	GGCC	4 cut(s)	535, 983, 1108, 1163
HapII	CCGG	7 cut(s)	88, 365, 444, 675, 687, 899, 1007
Hin1II	CATG	2 cut(s)	518, 770
HincII	GTYRAC	2 cut(s)	6, 370
HindII	GTYRAC	2 cut(s)	6, 370
HindIII	AAGCTT	3 cut(s)	143, 522, 1124
HinfI	GANTC	5 cut(s)	105, 212, 407, 739, 1017
HpaI	GTTAAC	1 cut(s)	6
HpaII	CCGG	7 cut(s)	88, 365, 444, 675, 687, 899, 1007
HphI	GGTGA	5 cut(s)	16, 466, 748, 970, 1093
Hpy166II	GTNNAC	3 cut(s)	6, 370, 564
Hpy188I	TCNGA	6 cut(s)	168, 238, 420, 708, 1016, 1047
Hpy188III	TCNNGA	5 cut(s)	311, 376, 397, 646, 665
Hpy8I	GTNNAC	3 cut(s)	6, 370, 564
Hpy99I	CGWCG	1 cut(s)	238
HpyCH4III	ACNGT	2 cut(s)	226, 424
HpyCH4V	TGCA	4 cut(s)	557, 641, 774, 995
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 623, 860
HpyF3I	CTNAG	6 cut(s)	167, 207, 312, 600, 618, 876
Hsp92II	CATG	2 cut(s)	518, 770
KpnI	GGTACC	1 cut(s)	749
KroI	GCCGGC	1 cut(s)	443
KroNI	GCCGGC	1 cut(s)	445
KspAI	GTTAAC	1 cut(s)	6
Kzo9I	GATC	2 cut(s)	137, 864
LguI	GCTCTTC	1 cut(s)	836
LmnI	GCTCC	1 cut(s)	1037
Lsp1109I	GCAGC	2 cut(s)	337, 610
LweI	GCATC	1 cut(s)	913
MabI	ACCWGGT	1 cut(s)	327
MaeI	CTAG	1 cut(s)	180
MaeIII	GTNAC	5 cut(s)	220, 582, 938, 997, 1024
MalI	GATC	2 cut(s)	139, 866
MbiI	CCGCTC	2 cut(s)	20, 164
MboI	GATC	2 cut(s)	137, 864
MboII	GAAGA	6 cut(s)	407, 587, 750, 853, 902, 1060
MfeI	CAATTG	1 cut(s)	1188
MflI	RGATCY	1 cut(s)	137
MhlI	GDGCHC	1 cut(s)	1110
MluCI	AATT	6 cut(s)	60, 604, 750, 893, 905, 1188
MlyI	GAGTC	1 cut(s)	221
MmeI	TCCRAC	4 cut(s)	216, 443, 706, 1056
MroNI	GCCGGC	1 cut(s)	443
MseI	TTAA	4 cut(s)	5, 339, 483, 986
MspA1I	CMGCKG	1 cut(s)	152
MspI	CCGG	7 cut(s)	88, 365, 444, 675, 687, 899, 1007
MspR9I	CCNGG	7 cut(s)	89, 329, 365, 429, 676, 734, 1008
MunI	CAATTG	1 cut(s)	1188
MvaI	CCWGG	3 cut(s)	329, 429, 734
MwoI	GCNNNNNNNGC	3 cut(s)	26, 623, 860
NaeI	GCCGGC	1 cut(s)	445
NciI	CCSGG	4 cut(s)	89, 365, 676, 1008
NdeII	GATC	2 cut(s)	137, 864
NgoMIV	GCCGGC	1 cut(s)	443
NlaIII	CATG	2 cut(s)	518, 770
NlaIV	GGNNCC	4 cut(s)	309, 591, 747, 1108
NmuCI	GTSAC	2 cut(s)	220, 938
PciSI	GCTCTTC	1 cut(s)	836
PcsI	WCGNNNNNNNCGW	1 cut(s)	230
PdiI	GCCGGC	1 cut(s)	445
PfeI	GAWTC	4 cut(s)	105, 407, 739, 1017
PflMI	CCANNNNNTGG	1 cut(s)	334
PfoI	TCCNGGA	1 cut(s)	87
PkrI	GCNGC	4 cut(s)	19, 352, 355, 625
Ple19I	CGATCG	1 cut(s)	867
PleI	GAGTC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	220
Psp6I	CCWGG	3 cut(s)	327, 427, 732
PspGI	CCWGG	3 cut(s)	327, 427, 732
PspN4I	GGNNCC	4 cut(s)	309, 591, 747, 1108
PspOMI	GGGCCC	1 cut(s)	1106
PspPI	GGNCC	5 cut(s)	325, 533, 1106, 1107, 1161
PstNI	CAGNNNCTG	1 cut(s)	334
PsuI	RGATCY	1 cut(s)	137
PvuI	CGATCG	1 cut(s)	867
PvuII	CAGCTG	1 cut(s)	152
RsaI	GTAC	4 cut(s)	114, 563, 747, 1064
RsaNI	GTAC	4 cut(s)	113, 562, 746, 1063
SapI	GCTCTTC	1 cut(s)	836
SaqAI	TTAA	4 cut(s)	5, 339, 483, 986
SatI	GCNGC	4 cut(s)	18, 351, 354, 624
Sau3AI	GATC	2 cut(s)	137, 864
Sau96I	GGNCC	5 cut(s)	325, 533, 1106, 1107, 1161
SchI	GAGTC	1 cut(s)	221
ScrFI	CCNGG	7 cut(s)	89, 329, 365, 429, 676, 734, 1008
SduI	GDGCHC	1 cut(s)	1110
SexAI	ACCWGGT	1 cut(s)	327
SfaNI	GCATC	1 cut(s)	913
SinI	GGWCC	1 cut(s)	325
Sse9I	AATT	6 cut(s)	60, 604, 750, 893, 905, 1188
SsiI	CCGC	7 cut(s)	15, 18, 27, 162, 305, 353, 762
SspMI	CTAG	1 cut(s)	180
StyD4I	CCNGG	7 cut(s)	87, 327, 363, 427, 674, 732, 1006
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	2 cut(s)	226, 424
TaqI	TCGA	4 cut(s)	125, 291, 645, 867
TasI	AATT	6 cut(s)	60, 604, 750, 893, 905, 1188
TatI	WGTACW	1 cut(s)	561
TauI	GCSGC	2 cut(s)	20, 356
TfiI	GAWTC	4 cut(s)	105, 407, 739, 1017
Tru1I	TTAA	4 cut(s)	5, 339, 483, 986
Tru9I	TTAA	4 cut(s)	5, 339, 483, 986
TscAI	CASTG	8 cut(s)	37, 409, 571, 826, 954, 979, 1095, 1171
TseFI	GTSAC	2 cut(s)	220, 938
TseI	GCWGC	2 cut(s)	350, 623
Tsp45I	GTSAC	2 cut(s)	220, 938
TspDTI	ATGAA	2 cut(s)	257, 510
TspGWI	ACGGA	1 cut(s)	1050
TspRI	CASTG	8 cut(s)	37, 409, 571, 826, 954, 979, 1095, 1171
Van91I	CCANNNNNTGG	1 cut(s)	334
VpaK11BI	GGWCC	1 cut(s)	325
XapI	RAATTY	3 cut(s)	60, 604, 905
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.