MD16G1092800.v1.1

Zinc-binding dehydrogenase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Forward (+)
6411276 .. 6413736
2461 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1092800.v1.1.491

Sequence Viewer

Length: 1170 bp
ATGTTAACCACCACCACCGCTCTCAGTTCCACTGCTTCTCAGCTCACGTCCCCAAATCAATTTTCCATCAAATTTTCCTTCACATTCCGGGAAAATAACAACAGAATCGCGGTACCCAAAAGCTCGACTACCCAAAGATCCAAGATTTCTGCTGGTTTTCCTGCTCTGAGAGTGTCTGCCAGTTCCCAATCAGCCCCTGCTTCGGCAGAGGCGTCAAAGGTCGCGGTTGTGCCGTCGGAGATGAAGGCGTGGGTATATGGGGAATACGGGGGTGTTGATGTTTTGAAATTCGACAGCAAGGTTGCGGTTCCTGAGTTGCTGGAGGACCAGGTTCTGGTTAAGGTTGTCGCTGCGGCTCTCAACCCGGTTGACTTCAAGAGGAGGCAGGGAAAATTCAAGAACACTGACTCTCCGCTCCCGACTGTTCCAGGCTATGATGTCGCAGGCGTGGTGGCGAAGGTTGGCAGTAAAGTGAAGGACTTTAAAGAGGGGGACGAAGTGTATGGAGACATACACGAGAAAGCTTTGGAAGGGCCTAAACAATCTGGCTCTCTTGCAGAGTACACTGCTGTTGAAGAGAGGTTATTGGCACTTAAGCCTAAGAATCTGGATTTTGCTCAGGCTGCTTCCCTTCCTCTTGCAATCGAGACAGCTTATGAGGGTCTTGAAAAGACCGGGTTTTCTGCCGGTAAATCTTTGCTTGTTTTAAATGGTGCTGGTGGAGTTGGAAGCCTGGTGATTCAGCTGGCAAAACATGTATTTGGAGCTTCAAGAATAGCAGCCACTTCGAGCACCGGAAAGCTGGAGTTGTTGAAGAGCTTGGGCGCTGATTTAGCAATCGACTACACTAAAGAGAATTTCGAAGAATTGCCAGAAAAATTTGATGTCGTCTATGATGCTATTGGTCAATGTGATAAAGCAGTGAAGGTGGTGAAAGAAGGTGGCAGTGTGGTTGCCTTAACAGGTGCAGTAACACCTCCAGGTTTCAGATTTGTAGTTACTTCTAACGGTGCAGTTCTGAAGAAATTAAACCCGTATTTGGAGAGTGGGAAGGTGAAGCCAGTGATAGACCCCAAAGGGCCCTTTCCTTTCTCCAAGCTTGTGGAGGCTTTCTCTTACCTTGAAACAAATCGGGCCACTGGAAAGGTAGTCATACATCCAATTGAATGA

Protein Analysis

390

Amino Acids

41.29

Weight (kDa)

8.78

Isoelectric Point (pI)

26.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 108 - 200 1.9e-17 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 241 - 320 7.4e-14 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 274 - 385 8.9e-19 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 112
AccB1I GGYRCC 1 cut(s) 112
AccB7I CCANNNNNTGG 1 cut(s) 334
AccBSI CCGCTC 2 cut(s) 20, 415
AccII CGCG 2 cut(s) 110, 224
AciI CCGC 6 cut(s) 18, 110, 224, 305, 353, 413
AclWI GGATC 1 cut(s) 132
AcsI RAATTY 5 cut(s) 71, 287, 392, 856, 878
AcuI CTGAAG 1 cut(s) 1040
AcyI GRCGYC 1 cut(s) 212
AfaI GTAC 2 cut(s) 114, 563
AfiI CCNNNNNNNGG 3 cut(s) 202, 334, 1039
AflII CTTAAG 1 cut(s) 593
AflIII ACRYGT 1 cut(s) 754
AgsI TTSAA 9 cut(s) 286, 376, 397, 575, 668, 771, 814, 1124, 1166
AjiI CACGTC 1 cut(s) 48
AjnI CCWGG 4 cut(s) 327, 427, 732, 979
AjuI GAANNNNNNNTTGG 2 cut(s) 46, 78
AluBI AGCT 9 cut(s) 43, 123, 524, 653, 745, 767, 802, 819, 1099
AluI AGCT 9 cut(s) 43, 123, 524, 653, 745, 767, 802, 819, 1099
Alw21I GWGCWC 1 cut(s) 794
Alw26I GTCTC 2 cut(s) 501, 641
AlwI GGATC 1 cut(s) 132
AlwNI CAGNNNCTG 2 cut(s) 197, 334
AoxI GGCC 3 cut(s) 533, 1079, 1134
ApaI GGGCCC 1 cut(s) 1083
ApeKI GCWGC 3 cut(s) 350, 623, 779
ApoI RAATTY 5 cut(s) 71, 287, 392, 856, 878
Asp718I GGTACC 1 cut(s) 112
AspLEI GCGC 1 cut(s) 827
AspS9I GGNCC 5 cut(s) 325, 533, 1079, 1080, 1134
AsuC2I CCSGG 3 cut(s) 89, 365, 676
AsuHPI GGTGA 3 cut(s) 748, 943, 1066
AsuII TTCGAA 1 cut(s) 861
AvaII GGWCC 1 cut(s) 325
BaeGI GKGCMC 1 cut(s) 1083
BanI GGYRCC 1 cut(s) 112
BanII GRGCYC 1 cut(s) 1083
BauI CACGAG 1 cut(s) 515
Bbv12I GWGCWC 1 cut(s) 794
BbvI GCAGC 3 cut(s) 337, 610, 791
BccI CCATC 1 cut(s) 74
BceAI ACGGC 1 cut(s) 217
BcgI CGANNNNNNTGC 2 cut(s) 768, 802
BciT130I CCWGG 4 cut(s) 329, 429, 734, 981
BcnI CCSGG 3 cut(s) 89, 365, 676
BcoDI GTCTC 2 cut(s) 501, 641
BfoI RGCGCY 1 cut(s) 828
BfrI CTTAAG 1 cut(s) 593
BisI GCNGC 4 cut(s) 351, 354, 624, 780
BlsI GCNGC 4 cut(s) 352, 355, 625, 781
Bme1390I CCNGG 7 cut(s) 89, 329, 365, 429, 676, 734, 981
Bme18I GGWCC 1 cut(s) 325
BmgBI CACGTC 1 cut(s) 48
BmgT120I GGNCC 5 cut(s) 325, 533, 1079, 1080, 1134
BmiI GGNNCC 3 cut(s) 114, 309, 1081
BmrFI CCNGG 7 cut(s) 89, 329, 365, 429, 676, 734, 981
BmsI GCATC 1 cut(s) 886
BplI GAGNNNNNCTC 2 cut(s) 1097, 1129
BpmI CTGGAG 3 cut(s) 341, 824, 963
Bpu10I CCTNAGC 1 cut(s) 618
Bpu14I TTCGAA 1 cut(s) 861
BpuMI CCSGG 3 cut(s) 89, 365, 676
BsaHI GRCGYC 1 cut(s) 212
BsaWI WCCGGW 1 cut(s) 794
BsaXI ACNNNNNCTCC 2 cut(s) 394, 424
Bsc4I CCNNNNNNNGG 3 cut(s) 202, 334, 1039
Bse118I RCCGGY 1 cut(s) 686
Bse1I ACTGG 3 cut(s) 180, 1061, 1144
BseBI CCWGG 4 cut(s) 329, 429, 734, 981
BseGI GGATG 1 cut(s) 1156
BseLI CCNNNNNNNGG 3 cut(s) 202, 334, 1039
BseMII CTCAG 5 cut(s) 37, 53, 158, 303, 632
BseNI ACTGG 3 cut(s) 180, 1061, 1144
BseRI GAGGAG 1 cut(s) 394
BseSI GKGCMC 1 cut(s) 1083
BseXI GCAGC 3 cut(s) 337, 610, 791
BsgI GTGCAG 2 cut(s) 987, 1032
Bsh1236I CGCG 2 cut(s) 110, 224
BshFI GGCC 3 cut(s) 535, 1081, 1136
BshNI GGYRCC 1 cut(s) 112
BsiHKAI GWGCWC 1 cut(s) 794
BsiSI CCGG 5 cut(s) 88, 365, 675, 687, 795
BslFI GGGAC 2 cut(s) 34, 506
BslI CCNNNNNNNGG 3 cut(s) 202, 334, 1039
BsmAI GTCTC 2 cut(s) 501, 641
BsmFI GGGAC 2 cut(s) 34, 506
BsnI GGCC 3 cut(s) 535, 1081, 1136
Bsp119I TTCGAA 1 cut(s) 861
Bsp120I GGGCCC 1 cut(s) 1079
Bsp1286I GDGCHC 2 cut(s) 794, 1083
Bsp143I GATC 1 cut(s) 137
BspACI CCGC 6 cut(s) 18, 110, 224, 305, 353, 413
BspANI GGCC 3 cut(s) 535, 1081, 1136
BspCNI CTCAG 5 cut(s) 36, 52, 159, 304, 631
BspFNI CGCG 2 cut(s) 110, 224
BspLI GGNNCC 3 cut(s) 114, 309, 1081
BspPI GGATC 1 cut(s) 132
BspQI GCTCTTC 1 cut(s) 809
BspT104I TTCGAA 1 cut(s) 861
BspT107I GGYRCC 1 cut(s) 112
BspTI CTTAAG 1 cut(s) 593
BsrBI CCGCTC 2 cut(s) 20, 415
BsrFI RCCGGY 1 cut(s) 686
BsrI ACTGG 3 cut(s) 180, 1061, 1144
BssAI RCCGGY 1 cut(s) 686
BssMI GATC 1 cut(s) 137
BssNI GRCGYC 1 cut(s) 212
BssSI CACGAG 1 cut(s) 515
Bst2BI CACGAG 1 cut(s) 515
Bst2UI CCWGG 4 cut(s) 329, 429, 734, 981
Bst4CI ACNGT 2 cut(s) 424, 1010
Bst6I CTCTTC 2 cut(s) 570, 809
BstACI GRCGYC 1 cut(s) 212
BstAFI CTTAAG 1 cut(s) 593
BstBI TTCGAA 1 cut(s) 861
BstC8I GCNNGC 2 cut(s) 445, 747
BstDEI CTNAG 6 cut(s) 23, 39, 167, 312, 600, 618
BstF5I GGATG 1 cut(s) 1156
BstFNI CGCG 2 cut(s) 110, 224
BstH2I RGCGCY 1 cut(s) 828
BstHHI GCGC 1 cut(s) 827
BstKTI GATC 1 cut(s) 140
BstMAI GTCTC 2 cut(s) 501, 641
BstMBI GATC 1 cut(s) 137
BstMWI GCNNNNNNNGC 2 cut(s) 623, 833
BstNI CCWGG 4 cut(s) 329, 429, 734, 981
BstNSI RCATGY 1 cut(s) 758
BstSCI CCNGG 7 cut(s) 87, 327, 363, 427, 674, 732, 979
BstSLI GKGCMC 1 cut(s) 1083
BstUI CGCG 2 cut(s) 110, 224
BstV1I GCAGC 3 cut(s) 337, 610, 791
BstX2I RGATCY 1 cut(s) 137
BstXI CCANNNNNNTGG 1 cut(s) 1102
BstYI RGATCY 1 cut(s) 137
BsuRI GGCC 3 cut(s) 535, 1081, 1136
BtrI CACGTC 1 cut(s) 48
BtsCI GGATG 1 cut(s) 1156
BtsI GCAGTG 4 cut(s) 30, 564, 927, 952
BtsIMutI CAGTG 7 cut(s) 30, 402, 564, 927, 952, 1068, 1137
Cac8I GCNNGC 2 cut(s) 445, 747
CaiI CAGNNNCTG 2 cut(s) 197, 334
CfoI GCGC 1 cut(s) 827
Cfr10I RCCGGY 1 cut(s) 686
Cfr13I GGNCC 5 cut(s) 325, 533, 1079, 1080, 1134
CseI GACGC 1 cut(s) 201
CsiI ACCWGGT 1 cut(s) 327
Csp6I GTAC 2 cut(s) 113, 562
CviAII CATG 1 cut(s) 755
CviQI GTAC 2 cut(s) 113, 562
DdeI CTNAG 6 cut(s) 23, 39, 167, 312, 600, 618
DpnI GATC 1 cut(s) 139
DpnII GATC 1 cut(s) 137
DraI TTTAAA 2 cut(s) 484, 708
Eam1104I CTCTTC 2 cut(s) 570, 809
EarI CTCTTC 2 cut(s) 570, 809
Eco24I GRGCYC 1 cut(s) 1083
Eco47I GGWCC 1 cut(s) 325
Eco57I CTGAAG 1 cut(s) 1040
EcoO109I RGGNCCY 3 cut(s) 533, 1079, 1080
EcoRII CCWGG 4 cut(s) 327, 427, 732, 979
EcoT38I GRGCYC 1 cut(s) 1083
FaeI CATG 1 cut(s) 758
FaiI YATR 9 cut(s) 256, 258, 435, 504, 512, 657, 756, 894, 1154
FaqI GGGAC 2 cut(s) 34, 506
FatI CATG 1 cut(s) 754
Fnu4HI GCNGC 4 cut(s) 351, 354, 624, 780
FokI GGATG 1 cut(s) 1143
FriOI GRGCYC 1 cut(s) 1083
Fsp4HI GCNGC 4 cut(s) 351, 354, 624, 780
GlaI GCGC 1 cut(s) 826
GluI GCNGC 4 cut(s) 351, 354, 624, 780
GsuI CTGGAG 3 cut(s) 341, 824, 963
HaeII RGCGCY 1 cut(s) 828
HaeIII GGCC 3 cut(s) 535, 1081, 1136
HapII CCGG 5 cut(s) 88, 365, 675, 687, 795
HgaI GACGC 1 cut(s) 201
HhaI GCGC 1 cut(s) 827
Hin1I GRCGYC 1 cut(s) 212
Hin1II CATG 1 cut(s) 758
Hin6I GCGC 1 cut(s) 825
HinP1I GCGC 1 cut(s) 825
HincII GTYRAC 2 cut(s) 6, 370
HindII GTYRAC 2 cut(s) 6, 370
HindIII AAGCTT 2 cut(s) 522, 1097
HinfI GANTC 4 cut(s) 105, 407, 604, 739
HpaI GTTAAC 1 cut(s) 6
HpaII CCGG 5 cut(s) 88, 365, 675, 687, 795
HphI GGTGA 3 cut(s) 748, 943, 1066
Hpy166II GTNNAC 3 cut(s) 6, 370, 564
Hpy188I TCNGA 4 cut(s) 168, 238, 989, 1020
Hpy188III TCNNGA 8 cut(s) 311, 376, 397, 418, 608, 646, 665, 771
Hpy8I GTNNAC 3 cut(s) 6, 370, 564
Hpy99I CGWCG 1 cut(s) 238
HpyAV CCTTC 9 cut(s) 88, 238, 451, 469, 524, 641, 919, 932, 1045
HpyCH4III ACNGT 2 cut(s) 424, 1010
HpyCH4IV ACGT 1 cut(s) 47
HpyCH4V TGCA 4 cut(s) 557, 641, 968, 1013
HpyF10VI GCNNNNNNNGC 2 cut(s) 623, 833
HpyF3I CTNAG 6 cut(s) 23, 39, 167, 312, 600, 618
HpySE526I ACGT 1 cut(s) 47
Hsp92I GRCGYC 1 cut(s) 212
Hsp92II CATG 1 cut(s) 758
HspAI GCGC 1 cut(s) 825
KpnI GGTACC 1 cut(s) 116
KspAI GTTAAC 1 cut(s) 6
Kzo9I GATC 1 cut(s) 137
LguI GCTCTTC 1 cut(s) 809
LmnI GCTCC 2 cut(s) 420, 764
Lsp1109I GCAGC 3 cut(s) 337, 610, 791
LweI GCATC 1 cut(s) 886
MabI ACCWGGT 1 cut(s) 327
MaeII ACGT 1 cut(s) 47
MaeIII GTNAC 2 cut(s) 970, 997
MalI GATC 1 cut(s) 139
MbiI CCGCTC 2 cut(s) 20, 415
MboI GATC 1 cut(s) 137
MboII GAAGA 4 cut(s) 587, 826, 875, 1033
MfeI CAATTG 1 cut(s) 1161
MflI RGATCY 1 cut(s) 137
MhlI GDGCHC 2 cut(s) 794, 1083
MluCI AATT 9 cut(s) 59, 71, 287, 392, 856, 866, 878, 1025, 1161
MlyI GAGTC 1 cut(s) 401
MmeI TCCRAC 2 cut(s) 216, 706
MseI TTAA 7 cut(s) 5, 339, 483, 594, 707, 959, 1028
MspA1I CMGCKG 1 cut(s) 745
MspCI CTTAAG 1 cut(s) 593
MspI CCGG 5 cut(s) 88, 365, 675, 687, 795
MspR9I CCNGG 7 cut(s) 89, 329, 365, 429, 676, 734, 981
MunI CAATTG 1 cut(s) 1161
MvaI CCWGG 4 cut(s) 329, 429, 734, 981
MvnI CGCG 2 cut(s) 110, 224
MwoI GCNNNNNNNGC 2 cut(s) 623, 833
NciI CCSGG 3 cut(s) 89, 365, 676
NdeII GATC 1 cut(s) 137
NlaIII CATG 1 cut(s) 758
NlaIV GGNNCC 3 cut(s) 114, 309, 1081
NspI RCATGY 1 cut(s) 758
NspV TTCGAA 1 cut(s) 861
PciI ACATGT 1 cut(s) 754
PciSI GCTCTTC 1 cut(s) 809
PcsI WCGNNNNNNNCGW 1 cut(s) 209
PfeI GAWTC 3 cut(s) 105, 604, 739
PflMI CCANNNNNTGG 1 cut(s) 334
PfoI TCCNGGA 1 cut(s) 87
PkrI GCNGC 4 cut(s) 352, 355, 625, 781
PleI GAGTC 1 cut(s) 401
PpsI GAGTC 1 cut(s) 401
PscI ACATGT 1 cut(s) 754
Psp6I CCWGG 4 cut(s) 327, 427, 732, 979
PspGI CCWGG 4 cut(s) 327, 427, 732, 979
PspN4I GGNNCC 3 cut(s) 114, 309, 1081
PspOMI GGGCCC 1 cut(s) 1079
PspPI GGNCC 5 cut(s) 325, 533, 1079, 1080, 1134
PstNI CAGNNNCTG 2 cut(s) 197, 334
PsuI RGATCY 1 cut(s) 137
PvuII CAGCTG 1 cut(s) 745
RsaI GTAC 2 cut(s) 114, 563
RsaNI GTAC 2 cut(s) 113, 562
SapI GCTCTTC 1 cut(s) 809
SaqAI TTAA 7 cut(s) 5, 339, 483, 594, 707, 959, 1028
SatI GCNGC 4 cut(s) 351, 354, 624, 780
Sau3AI GATC 1 cut(s) 137
Sau96I GGNCC 5 cut(s) 325, 533, 1079, 1080, 1134
SchI GAGTC 1 cut(s) 401
ScrFI CCNGG 7 cut(s) 89, 329, 365, 429, 676, 734, 981
SduI GDGCHC 2 cut(s) 794, 1083
SexAI ACCWGGT 1 cut(s) 327
SfaNI GCATC 1 cut(s) 886
SfuI TTCGAA 1 cut(s) 861
SinI GGWCC 1 cut(s) 325
SmlI CTYRAG 1 cut(s) 593
SmoI CTYRAG 1 cut(s) 593
Sse9I AATT 9 cut(s) 59, 71, 287, 392, 856, 866, 878, 1025, 1161
SsiI CCGC 6 cut(s) 18, 110, 224, 305, 353, 413
StyD4I CCNGG 7 cut(s) 87, 327, 363, 427, 674, 732, 979
TaaI ACNGT 2 cut(s) 424, 1010
TaiI ACGT 1 cut(s) 50
TaqI TCGA 6 cut(s) 125, 291, 645, 788, 840, 861
TasI AATT 9 cut(s) 59, 71, 287, 392, 856, 866, 878, 1025, 1161
TatI WGTACW 1 cut(s) 561
TauI GCSGC 1 cut(s) 356
TfiI GAWTC 3 cut(s) 105, 604, 739
Tru1I TTAA 7 cut(s) 5, 339, 483, 594, 707, 959, 1028
Tru9I TTAA 7 cut(s) 5, 339, 483, 594, 707, 959, 1028
TscAI CASTG 7 cut(s) 37, 409, 571, 927, 952, 1068, 1144
TseI GCWGC 3 cut(s) 350, 623, 779
TspDTI ATGAA 1 cut(s) 257
TspRI CASTG 7 cut(s) 37, 409, 571, 927, 952, 1068, 1144
Van91I CCANNNNNTGG 1 cut(s) 334
Vha464I CTTAAG 1 cut(s) 593
VpaK11BI GGWCC 1 cut(s) 325
XapI RAATTY 5 cut(s) 71, 287, 392, 856, 878
XceI RCATGY 1 cut(s) 758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.