Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001188

Physical Location & Seq

Genomic Coordinates Forward (+)

32245678 .. 32248103

Gene Structure 2426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g34500.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGCTAACCACCACCACTGCCACTCTCAGTCTCAGCTCCTCCTCCTCTGCCTCCCAACTCCCACCACTCTTCCACTCTCTATCACCAAACCCAATCTCCCTCAGATTCTCCTCCACATTACAGCTAACCAAAACCAGAACCAGACCAACGCTTAAAACTCTCACTCGCCAAAAATGCCAGCTCCCTGCTCTGAGAGTGTCTGCTAAATACGAAGCTGCCCCTGCCACGGCTGAGGCCTCCACGGTGCCGTCGGAGATGAAGGCGTGGGTGTATGAGGAGTACGGGGGTGTTGATGTCTTGAAGTTTGATACCAAAGTTGCAGTGCCTGAGTTGTTGGACGATCAGGTTTTGATTAAGGTTATGGCTGCTGCGCTTAATCCGGTTGACTTCAAGAGGAGGCAGGGGAAGTTCCAGAGCACTGACTCTCCTCTTCCGACCGTTCCGGGCTATGATGTAGCTGGTGTGGTGGTGAAGGTTGGCAGTCAAGTAAAGGACTTCAAGGTGGGGGATGAAGTGTACGGGGACATACATGAGAAAGCTTTGGATGGGCCTAAGCAATCTGGCTCACTTGCTGAGTACACTGCTGTTGAAGAGAGGTTAATTGCACTAAAGCCTAAGAATCTAGACTTTGCTCAGGCTGCCTCTCTACCTCTTGCAATCGAGACTGCTTACGAGGGTCTCGAAAGGACAGGGTTTTCTGCTGGTAAATCTTTGCTTGTTTTAAATGGTGCTGGTGGAGTTGGAAGCCTGGTGATTCAGCTAGCAAAACATGTATTTGGAGCTTCAAAAGTTGCAGCCACTTCAAGCACTAAAAAATTAGAGTTGTTGAAGAGCTTGGGTGCTGATTTGGCAATTGACTACACCAAGGAGAACATCGAAGAATTGCCAGAAAAGTTTGATGTTGTCTACGATGCTATTGGTCAATGCGATAAGGCAGTGAAGGTGGTGAAAGAAGGTGGCAGTGTGGTGGCTCTAACAGGTGCAGTAACACCTCCAGGCTTCAGATTTGTAGTGACATCCAATGGTGCTGTCCTGAAGAAATTAAACCCCTATCTAGAGAGTGGGAAGGTGAAGCCAGTGATAGACCCCAAAGGGCCCTTCCCTTTCTCCAAGGTTGTCGAGGCCTTCTCTTACCTCGAAACGAATCGAGCCACTGGAAAGGTAGTCATAGATTCAATTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009941 GO:0010319 GO:0016491 GO:0016627 GO:0016628 GO:0031967 GO:0031975 GO:0035671 GO:0035798 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

395

Amino Acids

42.04

Weight (kDa)

8.73

Isoelectric Point (pI)

30.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	113 - 205	4.2e-18	Alcohol dehydrogenase GroES-like domain
Glu_dehyd_C	PF16912	219 - 335	1.7e-06	Glucose dehydrogenase C-terminus
ADH_zinc_N	PF00107	246 - 325	3.6e-15	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	279 - 390	3.4e-18	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23740
fragaria_vesca	FvH4_4g34500 FvH4_6g50700
malus_domestica	MD09G1033200.v1.1 MD09G1033600.v1.1 MD09G1033700.v1.1 MD09G1034000.v1.1 MD13G1092200.v1.1 MD16G1092800.v1.1
prunus_persica	Prupe.1G253500_v2.0.a1 Prupe.3G284300_v2.0.a1 Prupe.3G284400_v2.0.a1 Prupe.3G284700_v2.0.a1 Prupe.3G284800_v2.0.a1 Prupe.3G284900_v2.0.a1
pyrus_communis	pycom111g02680 pycom111g02700 pycom13g08010 pycom16g07920
rosa_chinensis	RchiOBHm_Chr2g0171461 RchiOBHm_Chr2g0171481 RchiOBHm_Chr2g0171491 RchiOBHm_Chr2g0172531 RchiOBHm_Chr4g0443881
rosa_laevigata	RLG00000005881 RLG00000022016 RLG00000022019 RLG00000022020 RLG00000022113 RLG00000023107
rosa_multiflora	Rmu_sc0000912.1_g000009 Rmu_sc0006783.1_g000002 Rmu_sc0006783.1_g000005 Rmu_sc0010179.1_g000003 Rmu_sc0019062.1_g000006
rosa_roxburghii	Rroxscaffold_2G00080590 Rroxscaffold_2G00080610 Rroxscaffold_2G00080630 Rroxscaffold_5G00384440
rosa_rugosa	Rorug02G0554600 Rorug02G0554700 Rorug02G0554800 Rorug04G0348000
rosa_samantha	Rh2AG628800 Rh2AG629000 Rh2BG639300 Rh2BG639500 Rh2BG639600 Rh2CG607900 Rh2CG608100 Rh2CG608200 Rh2CG615900 Rh4DG414600
rosa_wichuraiana	Rw2G052090 Rw2G052100 Rw2G052590 Rw4G035080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	244
AccI	GTMKAC	1 cut(s)	906
AcuI	CTGAAG	2 cut(s)	985, 1055
AfaI	GTAC	3 cut(s)	281, 518, 578
AfiI	CCNNNNNNNGG	1 cut(s)	226
AflIII	ACRYGT	1 cut(s)	769
AgsI	TTSAA	9 cut(s)	301, 391, 499, 590, 786, 804, 829, 1176, 1181
AjnI	CCWGG	2 cut(s)	747, 994
AjuI	GAANNNNNNNTTGG	2 cut(s)	1082, 1114
AluBI	AGCT	9 cut(s)	36, 124, 181, 215, 458, 539, 760, 782, 834
AluI	AGCT	9 cut(s)	36, 124, 181, 215, 458, 539, 760, 782, 834
Alw21I	GWGCWC	1 cut(s)	419
Alw26I	GTCTC	3 cut(s)	35, 656, 683
AlwNI	CAGNNNCTG	1 cut(s)	326
AoxI	GGCC	4 cut(s)	234, 548, 1094, 1122
ApaI	GGGCCC	1 cut(s)	1098
ApeKI	GCWGC	5 cut(s)	215, 365, 368, 638, 794
AspLEI	GCGC	1 cut(s)	373
AspS9I	GGNCC	3 cut(s)	548, 1094, 1095
AsuC2I	CCSGG	1 cut(s)	444
AsuHPI	GGTGA	5 cut(s)	75, 481, 763, 958, 1081
AsuNHI	GCTAGC	1 cut(s)	760
BaeGI	GKGCMC	1 cut(s)	1098
BaeI	ACNNNNGTAYC	2 cut(s)	300, 333
BanI	GGYRCC	1 cut(s)	244
BanII	GRGCYC	1 cut(s)	1098
Bbv12I	GWGCWC	1 cut(s)	419
BbvCI	CCTCAGC	1 cut(s)	231
BbvI	GCAGC	5 cut(s)	202, 352, 355, 625, 806
BccI	CCATC	1 cut(s)	539
BceAI	ACGGC	2 cut(s)	232, 243
BciT130I	CCWGG	2 cut(s)	749, 996
BcnI	CCSGG	1 cut(s)	444
BcoDI	GTCTC	3 cut(s)	35, 656, 683
BfaI	CTAG	3 cut(s)	623, 761, 1055
BisI	GCNGC	5 cut(s)	216, 366, 369, 639, 795
BlsI	GCNGC	5 cut(s)	217, 367, 370, 640, 796
Bme1390I	CCNGG	3 cut(s)	444, 749, 996
BmgT120I	GGNCC	3 cut(s)	548, 1094, 1095
BmiI	GGNNCC	2 cut(s)	246, 1096
BmrFI	CCNGG	3 cut(s)	444, 749, 996
BmsI	GCATC	1 cut(s)	901
BmtI	GCTAGC	1 cut(s)	764
BplI	GAGNNNNNCTC	2 cut(s)	1112, 1144
BpmI	CTGGAG	1 cut(s)	978
Bpu10I	CCTNAGC	3 cut(s)	231, 552, 633
BpuMI	CCSGG	1 cut(s)	444
BsaI	GGTCTC	1 cut(s)	683
BsaJI	CCNNGG	4 cut(s)	225, 240, 864, 1110
BsaWI	WCCGGW	1 cut(s)	379
BsaXI	ACNNNNNCTCC	4 cut(s)	80, 110, 409, 439
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
Bse1I	ACTGG	2 cut(s)	1076, 1159
BseBI	CCWGG	2 cut(s)	749, 996
BseDI	CCNNGG	4 cut(s)	225, 240, 864, 1110
BseGI	GGATG	3 cut(s)	514, 550, 1016
BseLI	CCNNNNNNNGG	1 cut(s)	226
BseMII	CTCAG	8 cut(s)	40, 46, 115, 182, 222, 318, 564, 647
BseNI	ACTGG	2 cut(s)	1076, 1159
BseRI	GAGGAG	7 cut(s)	28, 31, 34, 100, 290, 409, 417
BseSI	GKGCMC	1 cut(s)	1098
BseXI	GCAGC	5 cut(s)	202, 352, 355, 625, 806
BsgI	GTGCAG	1 cut(s)	1002
Bsh1285I	CGRYCG	1 cut(s)	438
BshFI	GGCC	4 cut(s)	236, 550, 1096, 1124
BshNI	GGYRCC	1 cut(s)	244
BsiEI	CGRYCG	1 cut(s)	438
BsiHKAI	GWGCWC	1 cut(s)	419
BsiSI	CCGG	2 cut(s)	380, 443
BslFI	GGGAC	1 cut(s)	536
BslI	CCNNNNNNNGG	1 cut(s)	226
BsmAI	GTCTC	3 cut(s)	35, 656, 683
BsmFI	GGGAC	1 cut(s)	536
BsnI	GGCC	4 cut(s)	236, 550, 1096, 1124
Bso31I	GGTCTC	1 cut(s)	683
Bsp120I	GGGCCC	1 cut(s)	1094
Bsp1286I	GDGCHC	2 cut(s)	419, 1098
Bsp143I	GATC	1 cut(s)	340
BspANI	GGCC	4 cut(s)	236, 550, 1096, 1124
BspCNI	CTCAG	8 cut(s)	39, 45, 114, 183, 223, 319, 565, 646
BspLI	GGNNCC	2 cut(s)	246, 1096
BspOI	GCTAGC	1 cut(s)	764
BspQI	GCTCTTC	1 cut(s)	824
BspT107I	GGYRCC	1 cut(s)	244
BspTNI	GGTCTC	1 cut(s)	683
BsrI	ACTGG	2 cut(s)	1076, 1159
BssECI	CCNNGG	4 cut(s)	225, 240, 864, 1110
BssMI	GATC	1 cut(s)	340
BssT1I	CCWWGG	2 cut(s)	864, 1110
Bst2UI	CCWGG	2 cut(s)	749, 996
Bst4CI	ACNGT	2 cut(s)	244, 439
Bst6I	CTCTTC	4 cut(s)	74, 435, 585, 824
BstC8I	GCNNGC	2 cut(s)	179, 762
BstDSI	CCRYGG	2 cut(s)	225, 240
BstF5I	GGATG	3 cut(s)	514, 550, 1016
BstHHI	GCGC	1 cut(s)	373
BstKTI	GATC	1 cut(s)	343
BstMAI	GTCTC	3 cut(s)	35, 656, 683
BstMBI	GATC	1 cut(s)	340
BstMCI	CGRYCG	1 cut(s)	438
BstMWI	GCNNNNNNNGC	4 cut(s)	174, 221, 638, 848
BstNI	CCWGG	2 cut(s)	749, 996
BstNSI	RCATGY	1 cut(s)	773
BstSCI	CCNGG	3 cut(s)	442, 747, 994
BstSLI	GKGCMC	1 cut(s)	1098
BstV1I	GCAGC	5 cut(s)	202, 352, 355, 625, 806
BsuRI	GGCC	4 cut(s)	236, 550, 1096, 1124
BtgI	CCRYGG	2 cut(s)	225, 240
BtsCI	GGATG	3 cut(s)	514, 550, 1016
BtsI	GCAGTG	5 cut(s)	15, 327, 579, 942, 967
BtsIMutI	CAGTG	8 cut(s)	15, 327, 417, 579, 942, 967, 1083, 1152
Cac8I	GCNNGC	2 cut(s)	179, 762
CaiI	CAGNNNCTG	1 cut(s)	326
CfoI	GCGC	1 cut(s)	373
Cfr13I	GGNCC	3 cut(s)	548, 1094, 1095
Csp6I	GTAC	3 cut(s)	280, 517, 577
CviAII	CATG	2 cut(s)	530, 770
CviQI	GTAC	3 cut(s)	280, 517, 577
DpnI	GATC	1 cut(s)	342
DpnII	GATC	1 cut(s)	340
DraI	TTTAAA	1 cut(s)	723
Eam1104I	CTCTTC	4 cut(s)	74, 435, 585, 824
EarI	CTCTTC	4 cut(s)	74, 435, 585, 824
Eco130I	CCWWGG	2 cut(s)	864, 1110
Eco147I	AGGCCT	2 cut(s)	236, 1124
Eco24I	GRGCYC	1 cut(s)	1098
Eco31I	GGTCTC	1 cut(s)	683
Eco57I	CTGAAG	2 cut(s)	985, 1055
EcoO109I	RGGNCCY	2 cut(s)	1094, 1095
EcoRII	CCWGG	2 cut(s)	747, 994
EcoT14I	CCWWGG	2 cut(s)	864, 1110
EcoT38I	GRGCYC	1 cut(s)	1098
ErhI	CCWWGG	2 cut(s)	864, 1110
FaeI	CATG	2 cut(s)	533, 773
FaiI	YATR	7 cut(s)	273, 362, 450, 527, 531, 771, 1169
FaqI	GGGAC	1 cut(s)	536
FatI	CATG	2 cut(s)	529, 769
FblI	GTMKAC	1 cut(s)	906
Fnu4HI	GCNGC	5 cut(s)	216, 366, 369, 639, 795
FokI	GGATG	3 cut(s)	521, 557, 1003
FriOI	GRGCYC	1 cut(s)	1098
Fsp4HI	GCNGC	5 cut(s)	216, 366, 369, 639, 795
FspBI	CTAG	3 cut(s)	623, 761, 1055
GlaI	GCGC	1 cut(s)	372
GluI	GCNGC	5 cut(s)	216, 366, 369, 639, 795
GsuI	CTGGAG	1 cut(s)	978
HaeIII	GGCC	4 cut(s)	236, 550, 1096, 1124
HapII	CCGG	2 cut(s)	380, 443
HhaI	GCGC	1 cut(s)	373
Hin1II	CATG	2 cut(s)	533, 773
Hin6I	GCGC	1 cut(s)	371
HinP1I	GCGC	1 cut(s)	371
HincII	GTYRAC	1 cut(s)	385
HindII	GTYRAC	1 cut(s)	385
HindIII	AAGCTT	1 cut(s)	537
HinfI	GANTC	6 cut(s)	105, 422, 619, 754, 1144, 1172
HpaII	CCGG	2 cut(s)	380, 443
HphI	GGTGA	5 cut(s)	75, 481, 763, 958, 1081
Hpy166II	GTNNAC	4 cut(s)	385, 517, 579, 907
Hpy188I	TCNGA	5 cut(s)	104, 192, 253, 435, 1004
Hpy188III	TCNNGA	8 cut(s)	298, 391, 412, 623, 661, 680, 1033, 1055
Hpy8I	GTNNAC	4 cut(s)	385, 517, 579, 907
Hpy99I	CGWCG	1 cut(s)	253
HpyAV	CCTTC	7 cut(s)	253, 466, 934, 947, 1060, 1108, 1135
HpyCH4III	ACNGT	2 cut(s)	244, 439
HpyCH4V	TGCA	5 cut(s)	320, 605, 656, 794, 983
HpyF10VI	GCNNNNNNNGC	4 cut(s)	174, 221, 638, 848
Hsp92II	CATG	2 cut(s)	533, 773
HspAI	GCGC	1 cut(s)	371
Kzo9I	GATC	1 cut(s)	340
LguI	GCTCTTC	1 cut(s)	824
LmnI	GCTCC	3 cut(s)	41, 186, 779
Lsp1109I	GCAGC	5 cut(s)	202, 352, 355, 625, 806
LweI	GCATC	1 cut(s)	901
MaeI	CTAG	3 cut(s)	623, 761, 1055
MaeIII	GTNAC	2 cut(s)	985, 1012
MalI	GATC	1 cut(s)	342
MboI	GATC	1 cut(s)	340
MboII	GAAGA	6 cut(s)	61, 422, 602, 841, 890, 1048
MfeI	CAATTG	1 cut(s)	852
MhlI	GDGCHC	2 cut(s)	419, 1098
MluCI	AATT	6 cut(s)	600, 815, 852, 881, 1040, 1176
MlyI	GAGTC	1 cut(s)	416
MmeI	TCCRAC	4 cut(s)	231, 315, 458, 721
MseI	TTAA	6 cut(s)	153, 354, 375, 599, 722, 1043
MspI	CCGG	2 cut(s)	380, 443
MspR9I	CCNGG	3 cut(s)	444, 749, 996
MunI	CAATTG	1 cut(s)	852
MvaI	CCWGG	2 cut(s)	749, 996
MwoI	GCNNNNNNNGC	4 cut(s)	174, 221, 638, 848
NciI	CCSGG	1 cut(s)	444
NdeII	GATC	1 cut(s)	340
NheI	GCTAGC	1 cut(s)	760
NlaIII	CATG	2 cut(s)	533, 773
NlaIV	GGNNCC	2 cut(s)	246, 1096
NmuCI	GTSAC	1 cut(s)	1012
NspI	RCATGY	1 cut(s)	773
PceI	AGGCCT	2 cut(s)	236, 1124
PciI	ACATGT	1 cut(s)	769
PciSI	GCTCTTC	1 cut(s)	824
PcsI	WCGNNNNNNNCGW	1 cut(s)	678
PfeI	GAWTC	5 cut(s)	105, 619, 754, 1144, 1172
PkrI	GCNGC	5 cut(s)	217, 367, 370, 640, 796
PleI	GAGTC	1 cut(s)	416
PpsI	GAGTC	1 cut(s)	416
PscI	ACATGT	1 cut(s)	769
Psp6I	CCWGG	2 cut(s)	747, 994
PspGI	CCWGG	2 cut(s)	747, 994
PspN4I	GGNNCC	2 cut(s)	246, 1096
PspOMI	GGGCCC	1 cut(s)	1094
PspPI	GGNCC	3 cut(s)	548, 1094, 1095
PstNI	CAGNNNCTG	1 cut(s)	326
RsaI	GTAC	3 cut(s)	281, 518, 578
RsaNI	GTAC	3 cut(s)	280, 517, 577
SapI	GCTCTTC	1 cut(s)	824
SaqAI	TTAA	6 cut(s)	153, 354, 375, 599, 722, 1043
SatI	GCNGC	5 cut(s)	216, 366, 369, 639, 795
Sau3AI	GATC	1 cut(s)	340
Sau96I	GGNCC	3 cut(s)	548, 1094, 1095
SchI	GAGTC	1 cut(s)	416
ScrFI	CCNGG	3 cut(s)	444, 749, 996
SduI	GDGCHC	2 cut(s)	419, 1098
SfaNI	GCATC	1 cut(s)	901
Sse9I	AATT	6 cut(s)	600, 815, 852, 881, 1040, 1176
SseBI	AGGCCT	2 cut(s)	236, 1124
SspMI	CTAG	3 cut(s)	623, 761, 1055
StuI	AGGCCT	2 cut(s)	236, 1124
StyD4I	CCNGG	3 cut(s)	442, 747, 994
StyI	CCWWGG	2 cut(s)	864, 1110
TaaI	ACNGT	2 cut(s)	244, 439
TaqI	TCGA	6 cut(s)	660, 681, 876, 1119, 1137, 1147
TasI	AATT	6 cut(s)	600, 815, 852, 881, 1040, 1176
TatI	WGTACW	1 cut(s)	576
TfiI	GAWTC	5 cut(s)	105, 619, 754, 1144, 1172
Tru1I	TTAA	6 cut(s)	153, 354, 375, 599, 722, 1043
Tru9I	TTAA	6 cut(s)	153, 354, 375, 599, 722, 1043
TscAI	CASTG	8 cut(s)	22, 327, 424, 586, 942, 967, 1083, 1159
TseFI	GTSAC	1 cut(s)	1012
TseI	GCWGC	5 cut(s)	215, 365, 368, 638, 794
Tsp45I	GTSAC	1 cut(s)	1012
TspDTI	ATGAA	2 cut(s)	272, 525
TspRI	CASTG	8 cut(s)	22, 327, 424, 586, 942, 967, 1083, 1159
XbaI	TCTAGA	2 cut(s)	622, 1054
XceI	RCATGY	1 cut(s)	773
XmiI	GTMKAC	1 cut(s)	906
XspI	CTAG	3 cut(s)	623, 761, 1055

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.