MD13G1092200.v1.1

Zinc-binding dehydrogenase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Forward (+)
6500506 .. 6503059
2554 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1092200.v1.1.491

Sequence Viewer

Length: 1170 bp
ATGTTAACCACCACCGCCGCTCTCACCTCCACTGCTTCTCAACTCACATCACCAAACCAAATTTCTCCCAGATTTTCCTTCACTTTCCGGGAAAATAACAACAGAATCGCGGTACCCAAAAGTTCGACCACCCAAAGATCCAAGCTTTCAGTTGGTTTTCCCGCTCTGAGAGTGTCTGCTAGTTCCCGGTCTGCCCCTGCTTCGGCTGAGGCGTCAAAGGTCACGGTTCTGCCGTCGGAGATGAAGGCGTGGGTTTATGGGGAATACGGGGGTGTTGATGTTTTGAAGTTCGACACCAAAGTTGCGGTTCCTGAGTTGCTGGAGGACCAGGTTCTGGTTAAGGTTGTCGCTGCGGCTCTCAACCCGGTTGACTTCAAGAGGAGGCAGGGCAAGTTCAAGAACACTGATTCTCCTCTTCCGACTGTTCCAGGCTATGATGTTGCCGGCGTGGTGGTGAAGGTTGGCAGTAAAGTGAAGGACTTTAAAGAGGGGGATGAAGTGTATGGAGACATACATGAGAAAGCTTTGGAAGGGCCTAAACAATCTGGCTCTCTTGCAGAGTACACTGCCGTTGAAGAGAGGTTACTGGCAGCAAAGCCCAAGAATTTGGATTTTGCTGAGGCTGCTTCACTTCCTCTTGCAATCGAGACAGCTTATGAGGGTCTTGAAAAGACCGGGTTTTCTGCCGGTAAATCTTTGCTTGTTCTGAATGGTGCTGGTGGAGTTGGAAGCCTAGTGATTCAGCTAGCAAAACATGTATTTGGAGCTTCACGAATAGCAGCCACTTCAAGCACTGGAAAGCTGGAGTTATTGAAGAGCTTGGGTGCTGATTTAGCGATCGACTACACTAAGGAGAACTTGGAAGAATTGCCGGAAAATTTTGATGTCGTCTATGATGCTATTGGTCAATGTGACAAAGCAGTGAAGGTGGTGAAAGAAGGGGGCAGTGTGGTGGCCTTAACAGGTGCAGTAACACCTCCGGGTTTCAGATTCGTGGTTACTTCCAACGGAGCAGTTCTGAAGAAACTAAACCCGTACTTAGAGACTGGGAAGGTGAAGCCTGTGATAGACCCCAAAGGGCCCTTCCCCTTCTCCAAGCTTGTGGAGGCTTTCTCTTACCTTGAAACAAATCGGGCCACCGGAAAGGTAGTCATACATCCAATTGAATGA

Protein Analysis

390

Amino Acids

41.32

Weight (kDa)

8.61

Isoelectric Point (pI)

25.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 108 - 200 6.5e-18 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 241 - 320 4e-14 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 274 - 385 1.6e-17 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 112
AccB1I GGYRCC 1 cut(s) 112
AccB7I CCANNNNNTGG 1 cut(s) 334
AccBSI CCGCTC 2 cut(s) 20, 164
AccII CGCG 1 cut(s) 110
AciI CCGC 6 cut(s) 15, 18, 110, 162, 305, 353
AclWI GGATC 1 cut(s) 132
AcsI RAATTY 3 cut(s) 60, 604, 877
AcuI CTGAAG 1 cut(s) 1040
AcyI GRCGYC 1 cut(s) 212
AfaI GTAC 3 cut(s) 114, 563, 1037
AfiI CCNNNNNNNGG 2 cut(s) 202, 334
AflIII ACRYGT 1 cut(s) 754
AgsI TTSAA 9 cut(s) 286, 376, 397, 575, 668, 789, 814, 1124, 1166
AjnI CCWGG 2 cut(s) 327, 427
AjuI GAANNNNNNNTTGG 4 cut(s) 46, 78, 1067, 1099
AluBI AGCT 8 cut(s) 145, 524, 653, 745, 767, 802, 819, 1099
AluI AGCT 8 cut(s) 145, 524, 653, 745, 767, 802, 819, 1099
Alw26I GTCTC 3 cut(s) 501, 641, 1037
AlwI GGATC 1 cut(s) 132
AlwNI CAGNNNCTG 1 cut(s) 334
AoxI GGCC 4 cut(s) 533, 954, 1079, 1134
ApaI GGGCCC 1 cut(s) 1083
ApeKI GCWGC 4 cut(s) 350, 590, 623, 779
ApoI RAATTY 3 cut(s) 60, 604, 877
Asp718I GGTACC 1 cut(s) 112
AspS9I GGNCC 5 cut(s) 325, 533, 1079, 1080, 1134
AsuC2I CCSGG 5 cut(s) 89, 187, 365, 676, 981
AsuHPI GGTGA 5 cut(s) 16, 42, 466, 943, 1066
AsuNHI GCTAGC 1 cut(s) 745
AvaII GGWCC 1 cut(s) 325
BaeGI GKGCMC 1 cut(s) 1083
BanI GGYRCC 1 cut(s) 112
BanII GRGCYC 1 cut(s) 1083
BarI GAAGNNNNNNTAC 2 cut(s) 567, 599
BbvCI CCTCAGC 2 cut(s) 207, 618
BbvI GCAGC 4 cut(s) 337, 602, 610, 791
BceAI ACGGC 2 cut(s) 217, 554
BciT130I CCWGG 2 cut(s) 329, 429
BcnI CCSGG 5 cut(s) 89, 187, 365, 676, 981
BcoDI GTCTC 3 cut(s) 501, 641, 1037
BfaI CTAG 3 cut(s) 180, 734, 746
BisI GCNGC 6 cut(s) 18, 351, 354, 591, 624, 780
BlsI GCNGC 6 cut(s) 19, 352, 355, 592, 625, 781
Bme1390I CCNGG 7 cut(s) 89, 187, 329, 365, 429, 676, 981
Bme18I GGWCC 1 cut(s) 325
BmgT120I GGNCC 5 cut(s) 325, 533, 1079, 1080, 1134
BmiI GGNNCC 3 cut(s) 114, 309, 1081
BmrFI CCNGG 7 cut(s) 89, 187, 329, 365, 429, 676, 981
BmrI ACTGGG 1 cut(s) 1056
BmsI GCATC 1 cut(s) 886
BmtI GCTAGC 1 cut(s) 749
BmuI ACTGGG 1 cut(s) 1056
BplI GAGNNNNNCTC 2 cut(s) 1097, 1129
BpmI CTGGAG 2 cut(s) 341, 824
Bpu10I CCTNAGC 2 cut(s) 207, 618
BpuMI CCSGG 5 cut(s) 89, 187, 365, 676, 981
BsaHI GRCGYC 1 cut(s) 212
BsaWI WCCGGW 1 cut(s) 1139
BsaXI ACNNNNNCTCC 2 cut(s) 394, 424
Bsc4I CCNNNNNNNGG 2 cut(s) 202, 334
Bse118I RCCGGY 2 cut(s) 443, 686
Bse1I ACTGG 3 cut(s) 591, 799, 1051
BseBI CCWGG 2 cut(s) 329, 429
BseGI GGATG 2 cut(s) 499, 1156
BseLI CCNNNNNNNGG 2 cut(s) 202, 334
BseMII CTCAG 4 cut(s) 158, 198, 303, 609
BseNI ACTGG 3 cut(s) 591, 799, 1051
BseRI GAGGAG 2 cut(s) 394, 402
BseSI GKGCMC 1 cut(s) 1083
BseXI GCAGC 4 cut(s) 337, 602, 610, 791
BsgI GTGCAG 1 cut(s) 987
Bsh1236I CGCG 1 cut(s) 110
Bsh1285I CGRYCG 1 cut(s) 840
BshFI GGCC 4 cut(s) 535, 956, 1081, 1136
BshNI GGYRCC 1 cut(s) 112
BsiEI CGRYCG 1 cut(s) 840
BsiSI CCGG 9 cut(s) 88, 187, 365, 444, 675, 687, 872, 980, 1140
BslI CCNNNNNNNGG 2 cut(s) 202, 334
BsmAI GTCTC 3 cut(s) 501, 641, 1037
BsnI GGCC 4 cut(s) 535, 956, 1081, 1136
Bsp120I GGGCCC 1 cut(s) 1079
Bsp1286I GDGCHC 1 cut(s) 1083
Bsp143I GATC 2 cut(s) 137, 837
BspACI CCGC 6 cut(s) 15, 18, 110, 162, 305, 353
BspANI GGCC 4 cut(s) 535, 956, 1081, 1136
BspCNI CTCAG 4 cut(s) 159, 199, 304, 610
BspFNI CGCG 1 cut(s) 110
BspLI GGNNCC 3 cut(s) 114, 309, 1081
BspOI GCTAGC 1 cut(s) 749
BspPI GGATC 1 cut(s) 132
BspQI GCTCTTC 1 cut(s) 809
BspT107I GGYRCC 1 cut(s) 112
BsrBI CCGCTC 2 cut(s) 20, 164
BsrFI RCCGGY 2 cut(s) 443, 686
BsrI ACTGG 3 cut(s) 591, 799, 1051
BssAI RCCGGY 2 cut(s) 443, 686
BssMI GATC 2 cut(s) 137, 837
BssNI GRCGYC 1 cut(s) 212
Bst2UI CCWGG 2 cut(s) 329, 429
Bst4CI ACNGT 2 cut(s) 226, 424
Bst6I CTCTTC 3 cut(s) 420, 570, 809
BstACI GRCGYC 1 cut(s) 212
BstC8I GCNNGC 2 cut(s) 445, 747
BstDEI CTNAG 6 cut(s) 167, 207, 312, 618, 849, 1039
BstF5I GGATG 2 cut(s) 499, 1156
BstFNI CGCG 1 cut(s) 110
BstKTI GATC 2 cut(s) 140, 840
BstMAI GTCTC 3 cut(s) 501, 641, 1037
BstMBI GATC 2 cut(s) 137, 837
BstMCI CGRYCG 1 cut(s) 840
BstMWI GCNNNNNNNGC 2 cut(s) 623, 833
BstNI CCWGG 2 cut(s) 329, 429
BstNSI RCATGY 1 cut(s) 758
BstSCI CCNGG 7 cut(s) 87, 185, 327, 363, 427, 674, 979
BstSLI GKGCMC 1 cut(s) 1083
BstUI CGCG 1 cut(s) 110
BstV1I GCAGC 4 cut(s) 337, 602, 610, 791
BstX2I RGATCY 1 cut(s) 137
BstXI CCANNNNNNTGG 2 cut(s) 607, 1102
BstYI RGATCY 1 cut(s) 137
BsuRI GGCC 4 cut(s) 535, 956, 1081, 1136
BtsCI GGATG 2 cut(s) 499, 1156
BtsI GCAGTG 4 cut(s) 30, 564, 927, 952
BtsIMutI CAGTG 6 cut(s) 30, 402, 564, 792, 927, 952
Cac8I GCNNGC 2 cut(s) 445, 747
CaiI CAGNNNCTG 1 cut(s) 334
Cfr10I RCCGGY 2 cut(s) 443, 686
Cfr13I GGNCC 5 cut(s) 325, 533, 1079, 1080, 1134
CseI GACGC 1 cut(s) 201
CsiI ACCWGGT 1 cut(s) 327
Csp6I GTAC 3 cut(s) 113, 562, 1036
CviAII CATG 2 cut(s) 515, 755
CviQI GTAC 3 cut(s) 113, 562, 1036
DdeI CTNAG 6 cut(s) 167, 207, 312, 618, 849, 1039
DpnI GATC 2 cut(s) 139, 839
DpnII GATC 2 cut(s) 137, 837
DraI TTTAAA 1 cut(s) 484
Eam1104I CTCTTC 3 cut(s) 420, 570, 809
EarI CTCTTC 3 cut(s) 420, 570, 809
Eco24I GRGCYC 1 cut(s) 1083
Eco47I GGWCC 1 cut(s) 325
Eco57I CTGAAG 1 cut(s) 1040
EcoO109I RGGNCCY 3 cut(s) 533, 1079, 1080
EcoRII CCWGG 2 cut(s) 327, 427
EcoT38I GRGCYC 1 cut(s) 1083
FaeI CATG 2 cut(s) 518, 758
FaiI YATR 9 cut(s) 258, 435, 504, 512, 516, 657, 756, 894, 1154
FalI AAGNNNNNCTT 2 cut(s) 842, 874
FatI CATG 2 cut(s) 514, 754
FauI CCCGC 1 cut(s) 169
Fnu4HI GCNGC 6 cut(s) 18, 351, 354, 591, 624, 780
FokI GGATG 2 cut(s) 506, 1143
FriOI GRGCYC 1 cut(s) 1083
Fsp4HI GCNGC 6 cut(s) 18, 351, 354, 591, 624, 780
FspBI CTAG 3 cut(s) 180, 734, 746
GluI GCNGC 6 cut(s) 18, 351, 354, 591, 624, 780
GsuI CTGGAG 2 cut(s) 341, 824
HaeIII GGCC 4 cut(s) 535, 956, 1081, 1136
HapII CCGG 9 cut(s) 88, 187, 365, 444, 675, 687, 872, 980, 1140
HgaI GACGC 1 cut(s) 201
Hin1I GRCGYC 1 cut(s) 212
Hin1II CATG 2 cut(s) 518, 758
HincII GTYRAC 2 cut(s) 6, 370
HindII GTYRAC 2 cut(s) 6, 370
HindIII AAGCTT 3 cut(s) 143, 522, 1097
HinfI GANTC 4 cut(s) 105, 407, 739, 990
HpaI GTTAAC 1 cut(s) 6
HpaII CCGG 9 cut(s) 88, 187, 365, 444, 675, 687, 872, 980, 1140
HphI GGTGA 5 cut(s) 16, 42, 466, 943, 1066
Hpy166II GTNNAC 3 cut(s) 6, 370, 564
Hpy188I TCNGA 6 cut(s) 168, 238, 420, 708, 989, 1020
Hpy188III TCNNGA 6 cut(s) 311, 376, 397, 646, 665, 771
Hpy8I GTNNAC 3 cut(s) 6, 370, 564
Hpy99I CGWCG 1 cut(s) 238
HpyCH4III ACNGT 2 cut(s) 226, 424
HpyCH4V TGCA 3 cut(s) 557, 641, 968
HpyF10VI GCNNNNNNNGC 2 cut(s) 623, 833
HpyF3I CTNAG 6 cut(s) 167, 207, 312, 618, 849, 1039
Hsp92I GRCGYC 1 cut(s) 212
Hsp92II CATG 2 cut(s) 518, 758
KpnI GGTACC 1 cut(s) 116
KroI GCCGGC 1 cut(s) 443
KroNI GCCGGC 1 cut(s) 445
KspAI GTTAAC 1 cut(s) 6
Kzo9I GATC 2 cut(s) 137, 837
LguI GCTCTTC 1 cut(s) 809
LmnI GCTCC 2 cut(s) 764, 1010
Lsp1109I GCAGC 4 cut(s) 337, 602, 610, 791
LweI GCATC 1 cut(s) 886
MabI ACCWGGT 1 cut(s) 327
MaeI CTAG 3 cut(s) 180, 734, 746
MaeIII GTNAC 5 cut(s) 220, 582, 911, 970, 997
MalI GATC 2 cut(s) 139, 839
MbiI CCGCTC 2 cut(s) 20, 164
MboI GATC 2 cut(s) 137, 837
MboII GAAGA 5 cut(s) 407, 587, 826, 875, 1033
MfeI CAATTG 1 cut(s) 1161
MflI RGATCY 1 cut(s) 137
MhlI GDGCHC 1 cut(s) 1083
MluCI AATT 5 cut(s) 60, 604, 866, 877, 1161
MmeI TCCRAC 4 cut(s) 216, 443, 706, 1029
MroNI GCCGGC 1 cut(s) 443
MseI TTAA 4 cut(s) 5, 339, 483, 959
MspI CCGG 9 cut(s) 88, 187, 365, 444, 675, 687, 872, 980, 1140
MspR9I CCNGG 7 cut(s) 89, 187, 329, 365, 429, 676, 981
MunI CAATTG 1 cut(s) 1161
MvaI CCWGG 2 cut(s) 329, 429
MvnI CGCG 1 cut(s) 110
MwoI GCNNNNNNNGC 2 cut(s) 623, 833
NaeI GCCGGC 1 cut(s) 445
NciI CCSGG 5 cut(s) 89, 187, 365, 676, 981
NdeII GATC 2 cut(s) 137, 837
NgoMIV GCCGGC 1 cut(s) 443
NheI GCTAGC 1 cut(s) 745
NlaIII CATG 2 cut(s) 518, 758
NlaIV GGNNCC 3 cut(s) 114, 309, 1081
NmuCI GTSAC 2 cut(s) 220, 911
NspI RCATGY 1 cut(s) 758
PciI ACATGT 1 cut(s) 754
PciSI GCTCTTC 1 cut(s) 809
PcsI WCGNNNNNNNCGW 2 cut(s) 209, 230
PdiI GCCGGC 1 cut(s) 445
PfeI GAWTC 4 cut(s) 105, 407, 739, 990
PflMI CCANNNNNTGG 1 cut(s) 334
PfoI TCCNGGA 1 cut(s) 87
PkrI GCNGC 6 cut(s) 19, 352, 355, 592, 625, 781
Ple19I CGATCG 1 cut(s) 840
PscI ACATGT 1 cut(s) 754
Psp6I CCWGG 2 cut(s) 327, 427
PspGI CCWGG 2 cut(s) 327, 427
PspN4I GGNNCC 3 cut(s) 114, 309, 1081
PspOMI GGGCCC 1 cut(s) 1079
PspPI GGNCC 5 cut(s) 325, 533, 1079, 1080, 1134
PstNI CAGNNNCTG 1 cut(s) 334
PsuI RGATCY 1 cut(s) 137
PvuI CGATCG 1 cut(s) 840
RsaI GTAC 3 cut(s) 114, 563, 1037
RsaNI GTAC 3 cut(s) 113, 562, 1036
SapI GCTCTTC 1 cut(s) 809
SaqAI TTAA 4 cut(s) 5, 339, 483, 959
SatI GCNGC 6 cut(s) 18, 351, 354, 591, 624, 780
Sau3AI GATC 2 cut(s) 137, 837
Sau96I GGNCC 5 cut(s) 325, 533, 1079, 1080, 1134
ScrFI CCNGG 7 cut(s) 89, 187, 329, 365, 429, 676, 981
SduI GDGCHC 1 cut(s) 1083
SexAI ACCWGGT 1 cut(s) 327
SfaNI GCATC 1 cut(s) 886
SinI GGWCC 1 cut(s) 325
Sse9I AATT 5 cut(s) 60, 604, 866, 877, 1161
SsiI CCGC 6 cut(s) 15, 18, 110, 162, 305, 353
SspMI CTAG 3 cut(s) 180, 734, 746
StyD4I CCNGG 7 cut(s) 87, 185, 327, 363, 427, 674, 979
TaaI ACNGT 2 cut(s) 226, 424
TaqI TCGA 4 cut(s) 125, 291, 645, 840
TasI AATT 5 cut(s) 60, 604, 866, 877, 1161
TatI WGTACW 1 cut(s) 561
TauI GCSGC 2 cut(s) 20, 356
TfiI GAWTC 4 cut(s) 105, 407, 739, 990
Tru1I TTAA 4 cut(s) 5, 339, 483, 959
Tru9I TTAA 4 cut(s) 5, 339, 483, 959
TscAI CASTG 6 cut(s) 37, 409, 571, 799, 927, 952
TseFI GTSAC 2 cut(s) 220, 911
TseI GCWGC 4 cut(s) 350, 590, 623, 779
Tsp45I GTSAC 2 cut(s) 220, 911
TspDTI ATGAA 2 cut(s) 257, 510
TspGWI ACGGA 1 cut(s) 1023
TspRI CASTG 6 cut(s) 37, 409, 571, 799, 927, 952
Van91I CCANNNNNTGG 1 cut(s) 334
VpaK11BI GGWCC 1 cut(s) 325
XapI RAATTY 3 cut(s) 60, 604, 877
XceI RCATGY 1 cut(s) 758
XspI CTAG 3 cut(s) 180, 734, 746
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.