AT1G23740

Zinc-binding dehydrogenase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
8398115 .. 8399836
1722 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G23740.1

Sequence Viewer

Length: 1161 bp
ATGAACGCAGCGCTTGCAACAACCACCGCCACAACTCCCGTACTCCGCCGTGAGACGCCTCTTCTTCATTATTGTTCTCTCACAACAAAATCGCCGGTTTACCAAATCAACAGAGTTAGATTCGGATCTTGCGTGCAAACAGTCAGCAAGAAATTCTTGAAAATCTCGGCGAGCTCTCAGAGCGCTTCAGCGGCGGTCAATGTCACGGCGGATGCTTCGATTCCGAAAGAGATGAAGGCGTGGGTGTATAGTGACTACGGCGGAGTTGATGTTCTGAAGCTGGAGAGTAACATTGTTGTGCCGGAGATTAAAGAAGATCAGGTTTTGATTAAAGTTGTTGCGGCGGCTCTTAATCCCGTCGATGCTAAGAGACGGCAAGGGAAATTTAAAGCCACTGATTCGCCTCTCCCGACTGTTCCGGGATACGACGTTGCCGGAGTAGTGGTGAAAGTGGGAAGTGCGGTGAAGGATTTGAAAGAAGGAGATGAAGTTTATGCTAACGTGAGCGAGAAAGCATTGGAAGGTCCAAAGCAGTTTGGTTCTTTAGCGGAGTACACGGCCGTGGAAGAGAAGTTATTAGCTTTAAAACCTAAAAACATCGATTTTGCGCAAGCTGCAGGGCTTCCGTTGGCGATAGAAACCGCTGATGAAGGTTTAGTTAGGACTGAATTCTCAGCCGGAAAGTCAATTCTTGTTCTTAATGGTGCCGGAGGAGTAGGGAGTCTTGTGATTCAGTTGGCGAAGCACGTGTATGGAGCTTCAAAAGTAGCTGCAACTGCGAGTACAGAAAAGCTAGAGCTAGTGAGAAGCTTAGGTGCTGATTTAGCTATTGATTACACAAAGGAGAATATAGAAGACTTGCCTGACAAGTACGATGTTGTCTTTGACGCCATTGGGATGTGTGATAAGGCAGTGAAGGTGATTAAGGAAGGAGGGAAAGTTGTGGCATTGACTGGAGCTGTCACGCCTCCTGGTTTTCGATTCGTTGTTACATCTAATGGCGATGTTTTGAAGAAACTTAACCCATATATTGAGAGTGGGAAGGTGAAGCCTGTGGTTGATCCCAAAGGACCGTTCCCATTCTCACGCGTTGCTGATGCTTTTTCATACTTAGAAACGAACCATGCCACAGGGAAGGTCGTTGTTTATCCCATTCCTTAA

Protein Analysis

386

Amino Acids

40.99

Weight (kDa)

8.46

Isoelectric Point (pI)

30.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 105 - 197 5.7e-18 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 238 - 317 1.9e-15 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 271 - 382 8.2e-20 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 609
AccB1I GGYRCC 1 cut(s) 704
AccII CGCG 1 cut(s) 1089
AclWI GGATC 2 cut(s) 133, 1055
AcoI YGGCCR 1 cut(s) 558
AcsI RAATTY 3 cut(s) 152, 383, 668
AcuI CTGAAG 2 cut(s) 171, 296
AcvI CACGTG 1 cut(s) 748
AcyI GRCGYC 2 cut(s) 56, 888
AfaI GTAC 4 cut(s) 42, 554, 784, 872
AfeI AGCGCT 2 cut(s) 12, 184
AflIII ACRYGT 2 cut(s) 747, 1087
AgsI TTSAA 4 cut(s) 160, 475, 762, 1012
AjnI CCWGG 1 cut(s) 970
AjuI GAANNNNNNNTTGG 2 cut(s) 1058, 1090
AleI CACNNNNGTG 1 cut(s) 560
AloI GAACNNNNNNTCC 2 cut(s) 255, 287
Alw21I GWGCWC 1 cut(s) 176
Alw26I GTCTC 2 cut(s) 47, 364
AlwI GGATC 2 cut(s) 133, 1055
Aor51HI AGCGCT 2 cut(s) 12, 184
AoxI GGCC 1 cut(s) 558
ApeKI GCWGC 3 cut(s) 8, 614, 770
ApoI RAATTY 3 cut(s) 152, 383, 668
AspLEI GCGC 3 cut(s) 13, 185, 610
AspS9I GGNCC 2 cut(s) 524, 1070
AsuC2I CCSGG 1 cut(s) 420
AsuHPI GGTGA 4 cut(s) 457, 475, 931, 1057
AvaII GGWCC 2 cut(s) 524, 1070
BanI GGYRCC 1 cut(s) 704
BanII GRGCYC 1 cut(s) 176
BbrPI CACGTG 1 cut(s) 748
BbsI GAAGAC 1 cut(s) 861
Bbv12I GWGCWC 1 cut(s) 176
BbvI GCAGC 3 cut(s) 20, 601, 757
BceAI ACGGC 6 cut(s) 33, 222, 274, 389, 545, 573
BciT130I CCWGG 1 cut(s) 972
BciVI GTATCC 1 cut(s) 416
BcnI CCSGG 1 cut(s) 420
BcoDI GTCTC 2 cut(s) 47, 364
BfaI CTAG 2 cut(s) 794, 800
BfmI CTRYAG 1 cut(s) 615
BfoI RGCGCY 2 cut(s) 14, 186
BfuI GTATCC 1 cut(s) 416
BisI GCNGC 6 cut(s) 9, 192, 342, 345, 615, 771
BlsI GCNGC 6 cut(s) 10, 193, 343, 346, 616, 772
Bme1390I CCNGG 2 cut(s) 420, 972
Bme18I GGWCC 2 cut(s) 524, 1070
BmgT120I GGNCC 2 cut(s) 524, 1070
BmiI GGNNCC 1 cut(s) 706
BmrFI CCNGG 2 cut(s) 420, 972
BmsI GCATC 3 cut(s) 202, 352, 1087
BpiI GAAGAC 1 cut(s) 861
BpmI CTGGAG 2 cut(s) 302, 975
Bpu10I CCTNAGC 1 cut(s) 811
BpuMI CCSGG 1 cut(s) 420
Bsa29I ATCGAT 1 cut(s) 600
BsaAI YACGTR 1 cut(s) 748
BsaBI GATNNNNATC 1 cut(s) 124
BsaHI GRCGYC 2 cut(s) 56, 888
BsaJI CCNNGG 1 cut(s) 561
BsaXI ACNNNNNCTCC 8 cut(s) 255, 285, 429, 459, 474, 504, 924, 954
Bse118I RCCGGY 1 cut(s) 94
Bse1I ACTGG 1 cut(s) 958
Bse8I GATNNNNATC 1 cut(s) 124
BseBI CCWGG 1 cut(s) 972
BseCI ATCGAT 1 cut(s) 600
BseDI CCNNGG 1 cut(s) 561
BseGI GGATG 2 cut(s) 217, 903
BseJI GATNNNNATC 1 cut(s) 124
BseMII CTCAG 2 cut(s) 191, 687
BseNI ACTGG 1 cut(s) 958
BseRI GAGGAG 1 cut(s) 726
BseX3I CGGCCG 1 cut(s) 558
BseXI GCAGC 3 cut(s) 20, 601, 757
Bsh1236I CGCG 1 cut(s) 1089
Bsh1285I CGRYCG 1 cut(s) 561
BshFI GGCC 1 cut(s) 560
BshNI GGYRCC 1 cut(s) 704
BshVI ATCGAT 1 cut(s) 600
BsiEI CGRYCG 1 cut(s) 561
BsiHKAI GWGCWC 1 cut(s) 176
BsiSI CCGG 6 cut(s) 95, 302, 419, 435, 678, 708
BsmAI GTCTC 2 cut(s) 47, 364
BsmBI CGTCTC 2 cut(s) 47, 364
BsnI GGCC 1 cut(s) 560
Bsp1286I GDGCHC 1 cut(s) 176
Bsp143I GATC 3 cut(s) 125, 316, 1060
BspANI GGCC 1 cut(s) 560
BspCNI CTCAG 2 cut(s) 190, 686
BspDI ATCGAT 1 cut(s) 600
BspFNI CGCG 1 cut(s) 1089
BspLI GGNNCC 1 cut(s) 706
BspMAI CTGCAG 1 cut(s) 619
BspPI GGATC 2 cut(s) 133, 1055
BspT107I GGYRCC 1 cut(s) 704
BsrFI RCCGGY 1 cut(s) 94
BsrI ACTGG 1 cut(s) 958
BssAI RCCGGY 1 cut(s) 94
BssECI CCNNGG 1 cut(s) 561
BssMI GATC 3 cut(s) 125, 316, 1060
BssNI GRCGYC 2 cut(s) 56, 888
Bst2UI CCWGG 1 cut(s) 972
Bst4CI ACNGT 3 cut(s) 142, 415, 1074
Bst6I CTCTTC 2 cut(s) 66, 561
BstACI GRCGYC 2 cut(s) 56, 888
BstAPI GCANNNNNTGC 1 cut(s) 14
BstBAI YACGTR 1 cut(s) 748
BstC8I GCNNGC 4 cut(s) 15, 134, 172, 612
BstDEI CTNAG 5 cut(s) 177, 366, 673, 811, 1111
BstDSI CCRYGG 1 cut(s) 561
BstF5I GGATG 2 cut(s) 217, 903
BstFNI CGCG 1 cut(s) 1089
BstH2I RGCGCY 2 cut(s) 14, 186
BstHHI GCGC 3 cut(s) 13, 185, 610
BstKTI GATC 3 cut(s) 128, 319, 1063
BstMAI GTCTC 2 cut(s) 47, 364
BstMBI GATC 3 cut(s) 125, 316, 1060
BstMCI CGRYCG 1 cut(s) 561
BstMWI GCNNNNNNNGC 6 cut(s) 14, 180, 191, 614, 776, 824
BstNI CCWGG 1 cut(s) 972
BstSCI CCNGG 2 cut(s) 418, 970
BstSFI CTRYAG 1 cut(s) 615
BstUI CGCG 1 cut(s) 1089
BstV1I GCAGC 3 cut(s) 20, 601, 757
BstV2I GAAGAC 1 cut(s) 861
BstX2I RGATCY 1 cut(s) 125
BstYI RGATCY 1 cut(s) 125
BstZI CGGCCG 1 cut(s) 558
Bsu15I ATCGAT 1 cut(s) 600
BsuI GTATCC 1 cut(s) 416
BsuRI GGCC 1 cut(s) 560
BsuTUI ATCGAT 1 cut(s) 600
BtgI CCRYGG 1 cut(s) 561
BtgZI GCGATG 1 cut(s) 1017
BtsCI GGATG 2 cut(s) 217, 903
BtsI GCAGTG 1 cut(s) 918
BtsIMutI CAGTG 2 cut(s) 393, 918
Cac8I GCNNGC 4 cut(s) 15, 134, 172, 612
CfoI GCGC 3 cut(s) 13, 185, 610
Cfr10I RCCGGY 1 cut(s) 94
Cfr13I GGNCC 2 cut(s) 524, 1070
ClaI ATCGAT 1 cut(s) 600
CseI GACGC 2 cut(s) 64, 896
Csp6I GTAC 4 cut(s) 41, 553, 783, 871
CviAII CATG 1 cut(s) 1124
CviQI GTAC 4 cut(s) 41, 553, 783, 871
DdeI CTNAG 5 cut(s) 177, 366, 673, 811, 1111
DpnI GATC 3 cut(s) 127, 318, 1062
DpnII GATC 3 cut(s) 125, 316, 1060
DraI TTTAAA 2 cut(s) 388, 585
EaeI YGGCCR 1 cut(s) 558
EagI CGGCCG 1 cut(s) 558
Eam1104I CTCTTC 2 cut(s) 66, 561
EarI CTCTTC 2 cut(s) 66, 561
EciI GGCGGA 3 cut(s) 35, 224, 276
Ecl136II GAGCTC 1 cut(s) 174
EclXI CGGCCG 1 cut(s) 558
Eco24I GRGCYC 1 cut(s) 176
Eco47I GGWCC 2 cut(s) 524, 1070
Eco47III AGCGCT 2 cut(s) 12, 184
Eco52I CGGCCG 1 cut(s) 558
Eco53kI GAGCTC 1 cut(s) 174
Eco57I CTGAAG 2 cut(s) 171, 296
Eco72I CACGTG 1 cut(s) 748
EcoICRI GAGCTC 1 cut(s) 174
EcoRI GAATTC 1 cut(s) 668
EcoRII CCWGG 1 cut(s) 970
EcoT38I GRGCYC 1 cut(s) 176
Esp3I CGTCTC 2 cut(s) 47, 364
FaeI CATG 1 cut(s) 1127
FaiI YATR 8 cut(s) 249, 495, 753, 851, 1027, 1029, 1108, 1125
FalI AAGNNNNNCTT 2 cut(s) 140, 172
FatI CATG 1 cut(s) 1123
Fnu4HI GCNGC 6 cut(s) 9, 192, 342, 345, 615, 771
FokI GGATG 2 cut(s) 224, 910
FriOI GRGCYC 1 cut(s) 176
Fsp4HI GCNGC 6 cut(s) 9, 192, 342, 345, 615, 771
FspBI CTAG 2 cut(s) 794, 800
FspI TGCGCA 1 cut(s) 609
GlaI GCGC 3 cut(s) 12, 184, 609
GluI GCNGC 6 cut(s) 9, 192, 342, 345, 615, 771
GsuI CTGGAG 2 cut(s) 302, 975
HaeII RGCGCY 2 cut(s) 14, 186
HaeIII GGCC 1 cut(s) 560
HapII CCGG 6 cut(s) 95, 302, 419, 435, 678, 708
HgaI GACGC 2 cut(s) 64, 896
HhaI GCGC 3 cut(s) 13, 185, 610
Hin1I GRCGYC 2 cut(s) 56, 888
Hin1II CATG 1 cut(s) 1127
Hin6I GCGC 3 cut(s) 11, 183, 608
HinP1I GCGC 3 cut(s) 11, 183, 608
HindIII AAGCTT 1 cut(s) 808
HinfI GANTC 6 cut(s) 120, 220, 398, 721, 730, 981
HpaII CCGG 6 cut(s) 95, 302, 419, 435, 678, 708
HphI GGTGA 4 cut(s) 457, 475, 931, 1057
Hpy166II GTNNAC 2 cut(s) 100, 555
Hpy188I TCNGA 4 cut(s) 125, 180, 225, 276
Hpy188III TCNNGA 2 cut(s) 157, 409
Hpy8I GTNNAC 2 cut(s) 100, 555
Hpy99I CGWCG 2 cut(s) 362, 431
HpyAV CCTTC 9 cut(s) 229, 460, 473, 515, 644, 910, 923, 1036, 1129
HpyCH4III ACNGT 3 cut(s) 142, 415, 1074
HpyCH4IV ACGT 3 cut(s) 429, 501, 747
HpyCH4V TGCA 4 cut(s) 17, 136, 617, 773
HpyF10VI GCNNNNNNNGC 6 cut(s) 14, 180, 191, 614, 776, 824
HpyF3I CTNAG 5 cut(s) 177, 366, 673, 811, 1111
HpySE526I ACGT 3 cut(s) 429, 501, 747
Hsp92I GRCGYC 2 cut(s) 56, 888
Hsp92II CATG 1 cut(s) 1127
HspAI GCGC 3 cut(s) 11, 183, 608
Kzo9I GATC 3 cut(s) 125, 316, 1060
LmnI GCTCC 2 cut(s) 755, 956
Lsp1109I GCAGC 3 cut(s) 20, 601, 757
LweI GCATC 3 cut(s) 202, 352, 1087
MaeI CTAG 2 cut(s) 794, 800
MaeII ACGT 3 cut(s) 429, 501, 747
MaeIII GTNAC 5 cut(s) 202, 251, 287, 961, 988
MalI GATC 3 cut(s) 127, 318, 1062
MboI GATC 3 cut(s) 125, 316, 1060
MboII GAAGA 6 cut(s) 53, 56, 326, 578, 866, 1024
MflI RGATCY 1 cut(s) 125
MhlI GDGCHC 1 cut(s) 176
MluCI AATT 4 cut(s) 152, 383, 668, 687
MluI ACGCGT 1 cut(s) 1087
MlyI GAGTC 1 cut(s) 730
MnlI CCTC 5 cut(s) 69, 414, 704, 926, 978
MseI TTAA 9 cut(s) 309, 330, 351, 387, 584, 699, 924, 1020, 1159
MslI CAYNNNNRTG 4 cut(s) 296, 560, 750, 896
MspA1I CMGCKG 2 cut(s) 191, 644
MspI CCGG 6 cut(s) 95, 302, 419, 435, 678, 708
MspR9I CCNGG 2 cut(s) 420, 972
MvaI CCWGG 1 cut(s) 972
MvnI CGCG 1 cut(s) 1089
MwoI GCNNNNNNNGC 6 cut(s) 14, 180, 191, 614, 776, 824
NciI CCSGG 1 cut(s) 420
NdeII GATC 3 cut(s) 125, 316, 1060
NlaIII CATG 1 cut(s) 1127
NlaIV GGNNCC 1 cut(s) 706
NmeAIII GCCGAG 1 cut(s) 146
NmuCI GTSAC 3 cut(s) 202, 251, 961
NsbI TGCGCA 1 cut(s) 609
OliI CACNNNNGTG 1 cut(s) 560
PcsI WCGNNNNNNNCGW 2 cut(s) 129, 407
PfeI GAWTC 5 cut(s) 120, 220, 398, 730, 981
PfoI TCCNGGA 1 cut(s) 418
PkrI GCNGC 6 cut(s) 10, 193, 343, 346, 616, 772
PleI GAGTC 1 cut(s) 729
PmaCI CACGTG 1 cut(s) 748
PmlI CACGTG 1 cut(s) 748
PpsI GAGTC 1 cut(s) 729
Ppu21I YACGTR 1 cut(s) 748
Psp124BI GAGCTC 1 cut(s) 176
Psp6I CCWGG 1 cut(s) 970
PspCI CACGTG 1 cut(s) 748
PspGI CCWGG 1 cut(s) 970
PspN4I GGNNCC 1 cut(s) 706
PspPI GGNCC 2 cut(s) 524, 1070
PstI CTGCAG 1 cut(s) 619
PsuI RGATCY 1 cut(s) 125
RsaI GTAC 4 cut(s) 42, 554, 784, 872
RsaNI GTAC 4 cut(s) 41, 553, 783, 871
RseI CAYNNNNRTG 4 cut(s) 296, 560, 750, 896
SacI GAGCTC 1 cut(s) 176
SaqAI TTAA 9 cut(s) 309, 330, 351, 387, 584, 699, 924, 1020, 1159
SatI GCNGC 6 cut(s) 9, 192, 342, 345, 615, 771
Sau3AI GATC 3 cut(s) 125, 316, 1060
Sau96I GGNCC 2 cut(s) 524, 1070
SchI GAGTC 1 cut(s) 730
ScrFI CCNGG 2 cut(s) 420, 972
SduI GDGCHC 1 cut(s) 176
SfaNI GCATC 3 cut(s) 202, 352, 1087
SfcI CTRYAG 1 cut(s) 615
SinI GGWCC 2 cut(s) 524, 1070
SmiMI CAYNNNNRTG 4 cut(s) 296, 560, 750, 896
Sse9I AATT 4 cut(s) 152, 383, 668, 687
SspMI CTAG 2 cut(s) 794, 800
SstI GAGCTC 1 cut(s) 176
StyD4I CCNGG 2 cut(s) 418, 970
TaaI ACNGT 3 cut(s) 142, 415, 1074
TaiI ACGT 3 cut(s) 432, 504, 750
TaqI TCGA 4 cut(s) 218, 360, 600, 979
TasI AATT 4 cut(s) 152, 383, 668, 687
TatI WGTACW 2 cut(s) 552, 782
TauI GCSGC 3 cut(s) 194, 344, 347
TfiI GAWTC 5 cut(s) 120, 220, 398, 730, 981
Tru1I TTAA 9 cut(s) 309, 330, 351, 387, 584, 699, 924, 1020, 1159
Tru9I TTAA 9 cut(s) 309, 330, 351, 387, 584, 699, 924, 1020, 1159
TscAI CASTG 2 cut(s) 400, 918
TseFI GTSAC 3 cut(s) 202, 251, 961
TseI GCWGC 3 cut(s) 8, 614, 770
Tsp45I GTSAC 3 cut(s) 202, 251, 961
TspDTI ATGAA 6 cut(s) 17, 56, 248, 501, 663, 1095
TspGWI ACGGA 1 cut(s) 615
TspRI CASTG 2 cut(s) 400, 918
VpaK11BI GGWCC 2 cut(s) 524, 1070
XapI RAATTY 3 cut(s) 152, 383, 668
XspI CTAG 2 cut(s) 794, 800
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.