Prupe.1G253500_v2.0.a1

Zinc-binding dehydrogenase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
26444511 .. 26446801
2291 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G253500.1

Sequence Viewer

Length: 1182 bp
ATGCTAGCAACCACTTCCACGCTCAGCTCCACTGCTTCTCAACTCACACCCTTAAGCTCTCTATCCCCAAACCCATTTTCTGTCAAATTTTCCTTCACTTTCCGAGAAAATAAGAACAGAATCGCAGTACCCACAAGCTTGAAATCCCAAAGATGCCAGCTTTCTGCTCTTCCTGCTCTGAGAGTGTCTGCTAGTTCCCAATCTGCCCCTACTTCCGTTGAGGCGTCAAAGGTCTCGGCTTTGCCGTCGGAGATGAAGGCGTGGGTATATGGGGAATATGGGGGTGTTGATGTTTTGAAATTTGATACCAAAGTTGCGGTGCCTGAGTTGCTGGAGGACCAGGTTTTGGTAAAGGTTGTGGCTGCGGCTCTTAACCCAGTCGATTTCAAGAGAAGGCAGGGCAAGTTCCAGAACACTGACTCTCCTCTTCCGACTGTTCCGGGATATGATGTTGCCGGTGTGGTGGTAAAAGTTGGCAGTAAAGTAAAGGACTTTAAAGAGGGGGATGAAGTGTACGGAGACATAAATGAGAAAGCTTTGGAGGGGCCTAAAAAATCTGGCTCTCTTGCTGAGTACACTGCAGTTGAAGAGAGGTTATTGGCGTTGAAGCCTAAGAATCTGGATTTTGTTCAGGCTGCTGCGCTTCCTCTTGCAATCGAGACTGCTTACGAGGGTCTCGAAAGGACTGGGTTTTCTGCTGGTAAATCTTTGCTTGTTTTGAATGGTGCTGGTGGAGTTGGAAGCCTGGTGATTCAGCTAGCAAAACATGTATTTGGAGCTTCAAGAGTGGCGGCCACTTCGAGCACCGGAAAATTGGAGTTGTTGAAGAGCTTGGGTGCTGATCTAGCCATTGACTACACAAAGGAGAATTTCGAAGAATTGCCAGAGAAATTTGATGTTGTATATGATGCAATTGGTCAATGTGATAAAGCAGTGAAGGTGGTGAAGGAAGGGGGCAGTGTAGTGGCCCTAACAGGCGCGGTAACACCTCCAGGCTTCAGATTTGTAGTGACTTCTAATGGAGCTGTTTTGAAGAAACTAAATCCATATTTAGAGAGTGGGAAGGTGAAGGCAGTGATAGATCCCAAAGGGCCCTTCCCTTTCTCTAAGCTTGTTGAGGCCTTCTCTTACCTTGAAACCAATCGGGCCACTGGAAAGGTAGTTATACATCCAATTCAATGA

Protein Analysis

394

Amino Acids

41.76

Weight (kDa)

8.88

Isoelectric Point (pI)

22.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 319
AccB7I CCANNNNNTGG 1 cut(s) 346
AccII CGCG 1 cut(s) 980
AciI CCGC 4 cut(s) 317, 365, 791, 980
AclWI GGATC 1 cut(s) 1076
AcoI YGGCCR 1 cut(s) 792
AcsI RAATTY 4 cut(s) 86, 299, 868, 890
AcuI CTGAAG 1 cut(s) 982
AcyI GRCGYC 1 cut(s) 224
AfaI GTAC 3 cut(s) 129, 515, 575
AfiI CCNNNNNNNGG 1 cut(s) 346
AflII CTTAAG 1 cut(s) 52
AflIII ACRYGT 1 cut(s) 766
AjnI CCWGG 3 cut(s) 339, 744, 991
AjuI GAANNNNNNNTTGG 4 cut(s) 61, 93, 1079, 1111
Alw21I GWGCWC 1 cut(s) 806
Alw26I GTCTC 4 cut(s) 238, 513, 653, 680
AlwI GGATC 1 cut(s) 1076
AoxI GGCC 6 cut(s) 545, 792, 966, 1091, 1119, 1146
ApaI GGGCCC 1 cut(s) 1095
ApeKI GCWGC 3 cut(s) 362, 635, 638
ApoI RAATTY 4 cut(s) 86, 299, 868, 890
AspLEI GCGC 2 cut(s) 643, 980
AspS9I GGNCC 6 cut(s) 337, 545, 967, 1091, 1092, 1146
AsuC2I CCSGG 1 cut(s) 441
AsuHPI GGTGA 3 cut(s) 760, 955, 1078
AsuII TTCGAA 1 cut(s) 873
AsuNHI GCTAGC 2 cut(s) 4, 757
AvaII GGWCC 1 cut(s) 337
BaeGI GKGCMC 1 cut(s) 1095
BaeI ACNNNNGTAYC 2 cut(s) 297, 330
BanI GGYRCC 1 cut(s) 319
BanII GRGCYC 1 cut(s) 1095
Bbv12I GWGCWC 1 cut(s) 806
BbvI GCAGC 3 cut(s) 349, 622, 625
BceAI ACGGC 1 cut(s) 229
BciT130I CCWGG 3 cut(s) 341, 746, 993
BcnI CCSGG 1 cut(s) 441
BcoDI GTCTC 4 cut(s) 238, 513, 653, 680
BfaI CTAG 4 cut(s) 5, 192, 758, 845
BfmI CTRYAG 1 cut(s) 579
BfrI CTTAAG 1 cut(s) 52
BisI GCNGC 5 cut(s) 363, 366, 636, 639, 792
BlpI GCTNAGC 1 cut(s) 23
BlsI GCNGC 5 cut(s) 364, 367, 637, 640, 793
Bme1390I CCNGG 4 cut(s) 341, 441, 746, 993
Bme18I GGWCC 1 cut(s) 337
BmgT120I GGNCC 6 cut(s) 337, 545, 967, 1091, 1092, 1146
BmiI GGNNCC 3 cut(s) 321, 546, 1093
BmrFI CCNGG 4 cut(s) 341, 441, 746, 993
BmrI ACTGGG 2 cut(s) 371, 696
BmsI GCATC 2 cut(s) 143, 898
BmtI GCTAGC 2 cut(s) 8, 761
BmuI ACTGGG 2 cut(s) 371, 696
BplI GAGNNNNNCTC 2 cut(s) 1109, 1141
BpmI CTGGAG 2 cut(s) 353, 975
Bpu1102I GCTNAGC 1 cut(s) 23
Bpu14I TTCGAA 1 cut(s) 873
BpuMI CCSGG 1 cut(s) 441
BsaHI GRCGYC 1 cut(s) 224
BsaI GGTCTC 2 cut(s) 238, 680
BsaWI WCCGGW 1 cut(s) 806
BsaXI ACNNNNNCTCC 2 cut(s) 406, 436
Bsc4I CCNNNNNNNGG 1 cut(s) 346
Bse118I RCCGGY 1 cut(s) 455
Bse1I ACTGG 3 cut(s) 377, 691, 1156
BseBI CCWGG 3 cut(s) 341, 746, 993
BseGI GGATG 2 cut(s) 511, 1168
BseLI CCNNNNNNNGG 1 cut(s) 346
BseMII CTCAG 4 cut(s) 37, 170, 315, 561
BseNI ACTGG 3 cut(s) 377, 691, 1156
BseRI GAGGAG 1 cut(s) 414
BseSI GKGCMC 1 cut(s) 1095
BseXI GCAGC 3 cut(s) 349, 622, 625
Bsh1236I CGCG 1 cut(s) 980
BshFI GGCC 6 cut(s) 547, 794, 968, 1093, 1121, 1148
BshNI GGYRCC 1 cut(s) 319
BsiHKAI GWGCWC 1 cut(s) 806
BsiSI CCGG 3 cut(s) 440, 456, 807
BslI CCNNNNNNNGG 1 cut(s) 346
BsmAI GTCTC 4 cut(s) 238, 513, 653, 680
BsnI GGCC 6 cut(s) 547, 794, 968, 1093, 1121, 1148
Bso31I GGTCTC 2 cut(s) 238, 680
Bsp119I TTCGAA 1 cut(s) 873
Bsp120I GGGCCC 1 cut(s) 1091
Bsp1286I GDGCHC 2 cut(s) 806, 1095
Bsp143I GATC 2 cut(s) 841, 1081
Bsp1720I GCTNAGC 1 cut(s) 23
BspACI CCGC 4 cut(s) 317, 365, 791, 980
BspANI GGCC 6 cut(s) 547, 794, 968, 1093, 1121, 1148
BspCNI CTCAG 4 cut(s) 36, 171, 316, 562
BspFNI CGCG 1 cut(s) 980
BspLI GGNNCC 3 cut(s) 321, 546, 1093
BspMAI CTGCAG 1 cut(s) 583
BspOI GCTAGC 2 cut(s) 8, 761
BspPI GGATC 1 cut(s) 1076
BspQI GCTCTTC 2 cut(s) 174, 821
BspT104I TTCGAA 1 cut(s) 873
BspT107I GGYRCC 1 cut(s) 319
BspTI CTTAAG 1 cut(s) 52
BspTNI GGTCTC 2 cut(s) 238, 680
BsrFI RCCGGY 1 cut(s) 455
BsrI ACTGG 3 cut(s) 377, 691, 1156
BssAI RCCGGY 1 cut(s) 455
BssMI GATC 2 cut(s) 841, 1081
BssNI GRCGYC 1 cut(s) 224
Bst2UI CCWGG 3 cut(s) 341, 746, 993
Bst4CI ACNGT 1 cut(s) 436
Bst6I CTCTTC 4 cut(s) 174, 432, 582, 821
BstACI GRCGYC 1 cut(s) 224
BstAFI CTTAAG 1 cut(s) 52
BstBI TTCGAA 1 cut(s) 873
BstC8I GCNNGC 3 cut(s) 6, 158, 759
BstDEI CTNAG 6 cut(s) 23, 179, 324, 570, 612, 1107
BstF5I GGATG 2 cut(s) 511, 1168
BstFNI CGCG 1 cut(s) 980
BstHHI GCGC 2 cut(s) 643, 980
BstKTI GATC 2 cut(s) 844, 1084
BstMAI GTCTC 4 cut(s) 238, 513, 653, 680
BstMBI GATC 2 cut(s) 841, 1081
BstMWI GCNNNNNNNGC 3 cut(s) 173, 328, 845
BstNI CCWGG 3 cut(s) 341, 746, 993
BstNSI RCATGY 1 cut(s) 770
BstSCI CCNGG 4 cut(s) 339, 439, 744, 991
BstSFI CTRYAG 1 cut(s) 579
BstSLI GKGCMC 1 cut(s) 1095
BstUI CGCG 1 cut(s) 980
BstV1I GCAGC 3 cut(s) 349, 622, 625
BstX2I RGATCY 1 cut(s) 1081
BstYI RGATCY 1 cut(s) 1081
BsuRI GGCC 6 cut(s) 547, 794, 968, 1093, 1121, 1148
BtsCI GGATG 2 cut(s) 511, 1168
BtsI GCAGTG 5 cut(s) 30, 576, 939, 964, 1080
BtsIMutI CAGTG 7 cut(s) 30, 414, 576, 939, 964, 1080, 1149
Cac8I GCNNGC 3 cut(s) 6, 158, 759
CfoI GCGC 2 cut(s) 643, 980
Cfr10I RCCGGY 1 cut(s) 455
Cfr13I GGNCC 6 cut(s) 337, 545, 967, 1091, 1092, 1146
CseI GACGC 1 cut(s) 213
CsiI ACCWGGT 1 cut(s) 339
Csp6I GTAC 3 cut(s) 128, 514, 574
CviAII CATG 1 cut(s) 767
CviQI GTAC 3 cut(s) 128, 514, 574
DdeI CTNAG 6 cut(s) 23, 179, 324, 570, 612, 1107
DpnI GATC 2 cut(s) 843, 1083
DpnII GATC 2 cut(s) 841, 1081
DraI TTTAAA 1 cut(s) 496
EaeI YGGCCR 1 cut(s) 792
Eam1104I CTCTTC 4 cut(s) 174, 432, 582, 821
EarI CTCTTC 4 cut(s) 174, 432, 582, 821
Eco147I AGGCCT 1 cut(s) 1121
Eco24I GRGCYC 1 cut(s) 1095
Eco31I GGTCTC 2 cut(s) 238, 680
Eco47I GGWCC 1 cut(s) 337
Eco57I CTGAAG 1 cut(s) 982
EcoO109I RGGNCCY 3 cut(s) 545, 1091, 1092
EcoRII CCWGG 3 cut(s) 339, 744, 991
EcoT38I GRGCYC 1 cut(s) 1095
FaeI CATG 1 cut(s) 770
FatI CATG 1 cut(s) 766
Fnu4HI GCNGC 5 cut(s) 363, 366, 636, 639, 792
FokI GGATG 2 cut(s) 518, 1155
FriOI GRGCYC 1 cut(s) 1095
Fsp4HI GCNGC 5 cut(s) 363, 366, 636, 639, 792
FspBI CTAG 4 cut(s) 5, 192, 758, 845
GlaI GCGC 2 cut(s) 642, 979
GluI GCNGC 5 cut(s) 363, 366, 636, 639, 792
GsuI CTGGAG 2 cut(s) 353, 975
HaeIII GGCC 6 cut(s) 547, 794, 968, 1093, 1121, 1148
HapII CCGG 3 cut(s) 440, 456, 807
HgaI GACGC 1 cut(s) 213
HhaI GCGC 2 cut(s) 643, 980
Hin1I GRCGYC 1 cut(s) 224
Hin1II CATG 1 cut(s) 770
Hin6I GCGC 2 cut(s) 641, 978
HinP1I GCGC 2 cut(s) 641, 978
HindIII AAGCTT 3 cut(s) 136, 534, 1109
HinfI GANTC 4 cut(s) 120, 419, 616, 751
HpaII CCGG 3 cut(s) 440, 456, 807
HphI GGTGA 3 cut(s) 760, 955, 1078
Hpy166II GTNNAC 2 cut(s) 514, 576
Hpy188I TCNGA 5 cut(s) 104, 180, 250, 432, 1001
Hpy188III TCNNGA 6 cut(s) 388, 409, 620, 658, 677, 783
Hpy8I GTNNAC 2 cut(s) 514, 576
Hpy99I CGWCG 1 cut(s) 250
HpyCH4III ACNGT 1 cut(s) 436
HpyCH4V TGCA 3 cut(s) 581, 653, 911
HpyF10VI GCNNNNNNNGC 3 cut(s) 173, 328, 845
HpyF3I CTNAG 6 cut(s) 23, 179, 324, 570, 612, 1107
Hsp92I GRCGYC 1 cut(s) 224
Hsp92II CATG 1 cut(s) 770
HspAI GCGC 2 cut(s) 641, 978
Kzo9I GATC 2 cut(s) 841, 1081
LguI GCTCTTC 2 cut(s) 174, 821
LmnI GCTCC 3 cut(s) 32, 776, 1022
Lsp1109I GCAGC 3 cut(s) 349, 622, 625
LweI GCATC 2 cut(s) 143, 898
MabI ACCWGGT 1 cut(s) 339
MaeI CTAG 4 cut(s) 5, 192, 758, 845
MaeIII GTNAC 2 cut(s) 982, 1009
MalI GATC 2 cut(s) 843, 1083
MboI GATC 2 cut(s) 841, 1081
MboII GAAGA 6 cut(s) 161, 419, 599, 838, 887, 1045
MfeI CAATTG 1 cut(s) 912
MflI RGATCY 1 cut(s) 1081
MhlI GDGCHC 2 cut(s) 806, 1095
MluCI AATT 8 cut(s) 86, 299, 812, 868, 878, 890, 912, 1173
MlyI GAGTC 1 cut(s) 413
MmeI TCCRAC 3 cut(s) 228, 455, 718
MseI TTAA 3 cut(s) 53, 372, 495
MspCI CTTAAG 1 cut(s) 52
MspI CCGG 3 cut(s) 440, 456, 807
MspR9I CCNGG 4 cut(s) 341, 441, 746, 993
MunI CAATTG 1 cut(s) 912
MvaI CCWGG 3 cut(s) 341, 746, 993
MvnI CGCG 1 cut(s) 980
MwoI GCNNNNNNNGC 3 cut(s) 173, 328, 845
NciI CCSGG 1 cut(s) 441
NdeII GATC 2 cut(s) 841, 1081
NheI GCTAGC 2 cut(s) 4, 757
NlaIII CATG 1 cut(s) 770
NlaIV GGNNCC 3 cut(s) 321, 546, 1093
NmeAIII GCCGAG 1 cut(s) 215
NmuCI GTSAC 1 cut(s) 1009
NspI RCATGY 1 cut(s) 770
NspV TTCGAA 1 cut(s) 873
PceI AGGCCT 1 cut(s) 1121
PciI ACATGT 1 cut(s) 766
PciSI GCTCTTC 2 cut(s) 174, 821
PcsI WCGNNNNNNNCGW 2 cut(s) 242, 675
PfeI GAWTC 3 cut(s) 120, 616, 751
PflMI CCANNNNNTGG 1 cut(s) 346
PfoI TCCNGGA 1 cut(s) 439
PkrI GCNGC 5 cut(s) 364, 367, 637, 640, 793
PleI GAGTC 1 cut(s) 413
PpsI GAGTC 1 cut(s) 413
PscI ACATGT 1 cut(s) 766
Psp6I CCWGG 3 cut(s) 339, 744, 991
PspGI CCWGG 3 cut(s) 339, 744, 991
PspN4I GGNNCC 3 cut(s) 321, 546, 1093
PspOMI GGGCCC 1 cut(s) 1091
PspPI GGNCC 6 cut(s) 337, 545, 967, 1091, 1092, 1146
PstI CTGCAG 1 cut(s) 583
PsuI RGATCY 1 cut(s) 1081
RsaI GTAC 3 cut(s) 129, 515, 575
RsaNI GTAC 3 cut(s) 128, 514, 574
SapI GCTCTTC 2 cut(s) 174, 821
SaqAI TTAA 3 cut(s) 53, 372, 495
SatI GCNGC 5 cut(s) 363, 366, 636, 639, 792
Sau3AI GATC 2 cut(s) 841, 1081
Sau96I GGNCC 6 cut(s) 337, 545, 967, 1091, 1092, 1146
SchI GAGTC 1 cut(s) 413
ScrFI CCNGG 4 cut(s) 341, 441, 746, 993
SduI GDGCHC 2 cut(s) 806, 1095
SexAI ACCWGGT 1 cut(s) 339
SfaNI GCATC 2 cut(s) 143, 898
SfcI CTRYAG 1 cut(s) 579
SfuI TTCGAA 1 cut(s) 873
SinI GGWCC 1 cut(s) 337
SmlI CTYRAG 1 cut(s) 52
SmoI CTYRAG 1 cut(s) 52
Sse9I AATT 8 cut(s) 86, 299, 812, 868, 878, 890, 912, 1173
SseBI AGGCCT 1 cut(s) 1121
SsiI CCGC 4 cut(s) 317, 365, 791, 980
SspMI CTAG 4 cut(s) 5, 192, 758, 845
StuI AGGCCT 1 cut(s) 1121
StyD4I CCNGG 4 cut(s) 339, 439, 744, 991
TaaI ACNGT 1 cut(s) 436
TaqI TCGA 5 cut(s) 381, 657, 678, 800, 873
TasI AATT 8 cut(s) 86, 299, 812, 868, 878, 890, 912, 1173
TatI WGTACW 1 cut(s) 573
TauI GCSGC 2 cut(s) 368, 794
TfiI GAWTC 3 cut(s) 120, 616, 751
Tru1I TTAA 3 cut(s) 53, 372, 495
Tru9I TTAA 3 cut(s) 53, 372, 495
TscAI CASTG 7 cut(s) 37, 421, 583, 939, 964, 1080, 1156
TseFI GTSAC 1 cut(s) 1009
TseI GCWGC 3 cut(s) 362, 635, 638
Tsp45I GTSAC 1 cut(s) 1009
TspDTI ATGAA 2 cut(s) 269, 522
TspGWI ACGGA 2 cut(s) 205, 531
TspRI CASTG 7 cut(s) 37, 421, 583, 939, 964, 1080, 1156
Van91I CCANNNNNTGG 1 cut(s) 346
Vha464I CTTAAG 1 cut(s) 52
VpaK11BI GGWCC 1 cut(s) 337
XapI RAATTY 4 cut(s) 86, 299, 868, 890
XceI RCATGY 1 cut(s) 770
XspI CTAG 4 cut(s) 5, 192, 758, 845
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.