Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000912.1

Orthogroup ID

OG0001188

Physical Location & Seq

Genomic Coordinates Reverse (-)

62293 .. 64167

Gene Structure 1875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000912.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

atgactgcagctccaagtgagtccataccctctgtatatggggcttgggtctattcagagtatggaaaaactgcagatgttctgaaatttgatccaagtgtggctgctcctgaaattaaagaggaccaggtgctgatcaaggttgtcgctgcttctcttaaccccattgatttcctgagagctcttggtttcttcaaggacatagagggtgacactcccttacctacagttccagggtatgatgtggctggtgtggtagtgaaggtaggaagccaagtgcagaagtttaaggtgggggatgaagtgtatgcttgtttgagtaatagcattgagattccccaatatcatgctaagaatagccatggggatctcaagaaagcattggtgaaaccaaacaggctggggtctttggcagagtacactgctgcaggagaaaccatgttggctctcaaacccaaaaacctgagctttattgaagctgctagccttcccttagctattgagacagcgtatggagcgcttgaaagagcggagctttcggctggtaaatccgtccttgttttgggaggcgctgggggtgttgggacacatgtgatacagctagctaagcatgttttcggggcttccaaagtagcagctactgcaagcactaaaaaactggatttgttgagaagcttgggtgctgatttggctatcgattacaccaaggagaacattgaagacctgccagagaaatttgatgtagtctatgatgcagttgggcagactgacaaggcagtgaaggcggtgaaggaaggtgggaaggtagtgacaatagtaggtccagtaactcctccggcgttcagatttgtggccacccctacagggtctatcttggagaaactgaagccttacttggagagcgagaaggtgaagccagtgcttgatcccacaggtccatatcccttttctaaagttgttgaagcacttggttaccttgagacttcaaaagctacaggaaaggtggttgtgtaccccatcccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N ADH_zinc_N_2

Protein Analysis

341

Amino Acids

36.09

Weight (kDa)

6.16

Isoelectric Point (pI)

25.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23740
fragaria_vesca	FvH4_4g34500 FvH4_6g50700
malus_domestica	MD09G1033200.v1.1 MD09G1033600.v1.1 MD09G1033700.v1.1 MD09G1034000.v1.1 MD13G1092200.v1.1 MD16G1092800.v1.1
prunus_persica	Prupe.1G253500_v2.0.a1 Prupe.3G284300_v2.0.a1 Prupe.3G284400_v2.0.a1 Prupe.3G284700_v2.0.a1 Prupe.3G284800_v2.0.a1 Prupe.3G284900_v2.0.a1
pyrus_communis	pycom111g02680 pycom111g02700 pycom13g08010 pycom16g07920
rosa_chinensis	RchiOBHm_Chr2g0171461 RchiOBHm_Chr2g0171481 RchiOBHm_Chr2g0171491 RchiOBHm_Chr2g0172531 RchiOBHm_Chr4g0443881
rosa_laevigata	RLG00000005881 RLG00000022016 RLG00000022019 RLG00000022020 RLG00000022113 RLG00000023107
rosa_multiflora	Rmu_sc0000912.1_g000009 Rmu_sc0006783.1_g000002 Rmu_sc0006783.1_g000005 Rmu_sc0010179.1_g000003 Rmu_sc0019062.1_g000006
rosa_roxburghii	Rroxscaffold_2G00080590 Rroxscaffold_2G00080610 Rroxscaffold_2G00080630 Rroxscaffold_5G00384440
rosa_rugosa	Rorug02G0554600 Rorug02G0554700 Rorug02G0554800 Rorug04G0348000
rosa_samantha	Rh2AG628800 Rh2AG629000 Rh2BG639300 Rh2BG639500 Rh2BG639600 Rh2CG607900 Rh2CG608100 Rh2CG608200 Rh2CG615900 Rh4DG414600
rosa_wichuraiana	Rw2G052090 Rw2G052100 Rw2G052590 Rw4G035080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	732
AccBSI	CCGCTC	1 cut(s)	530
AciI	CCGC	2 cut(s)	530, 785
AclWI	GGATC	3 cut(s)	86, 375, 920
AcoI	YGGCCR	1 cut(s)	852
AcsI	RAATTY	2 cut(s)	86, 734
AcuI	CTGAAG	1 cut(s)	905
AfaI	GTAC	2 cut(s)	419, 1013
AfeI	AGCGCT	1 cut(s)	519
AfiI	CCNNNNNNNGG	2 cut(s)	562, 864
AflIII	ACRYGT	1 cut(s)	589
AgsI	TTSAA	6 cut(s)	196, 476, 524, 719, 962, 987
AjnI	CCWGG	2 cut(s)	126, 232
AjuI	GAANNNNNNNTTGG	2 cut(s)	878, 910
Alw21I	GWGCWC	1 cut(s)	184
Alw26I	GTCTC	2 cut(s)	497, 974
AlwI	GGATC	3 cut(s)	86, 375, 920
AlwNI	CAGNNNCTG	2 cut(s)	133, 641
Aor51HI	AGCGCT	1 cut(s)	519
AoxI	GGCC	1 cut(s)	852
ApeKI	GCWGC	6 cut(s)	8, 104, 149, 425, 479, 635
ApoI	RAATTY	2 cut(s)	86, 734
AspLEI	GCGC	2 cut(s)	520, 572
AspS9I	GGNCC	3 cut(s)	124, 821, 935
AsuHPI	GGTGA	4 cut(s)	221, 397, 799, 922
AsuNHI	GCTAGC	2 cut(s)	482, 601
AvaII	GGWCC	3 cut(s)	124, 821, 935
BalI	TGGCCA	1 cut(s)	854
BanII	GRGCYC	1 cut(s)	184
BbsI	GAAGAC	1 cut(s)	726
Bbv12I	GWGCWC	1 cut(s)	184
BbvI	GCAGC	6 cut(s)	20, 91, 136, 412, 466, 647
BccI	CCATC	1 cut(s)	1025
BciT130I	CCWGG	2 cut(s)	128, 234
BclI	TGATCA	1 cut(s)	135
BcoDI	GTCTC	2 cut(s)	497, 974
BfaI	CTAG	2 cut(s)	483, 602
BfmI	CTRYAG	6 cut(s)	6, 72, 225, 426, 861, 993
BfoI	RGCGCY	2 cut(s)	521, 573
BfuAI	ACCTGC	1 cut(s)	732
BisI	GCNGC	6 cut(s)	9, 105, 150, 426, 480, 636
BlpI	GCTNAGC	1 cut(s)	606
BlsI	GCNGC	6 cut(s)	10, 106, 151, 427, 481, 637
Bme1390I	CCNGG	2 cut(s)	128, 234
Bme18I	GGWCC	3 cut(s)	124, 821, 935
BmgT120I	GGNCC	3 cut(s)	124, 821, 935
BmrFI	CCNGG	2 cut(s)	128, 234
BmsI	GCATC	1 cut(s)	742
BmtI	GCTAGC	2 cut(s)	486, 605
BpiI	GAAGAC	1 cut(s)	726
Bpu10I	CCTNAGC	2 cut(s)	464, 493
Bpu1102I	GCTNAGC	1 cut(s)	606
BpuEI	CTTGAG	2 cut(s)	356, 998
Bsa29I	ATCGAT	1 cut(s)	696
BsaJI	CCNNGG	3 cut(s)	233, 361, 705
BsaXI	ACNNNNNCTCC	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	2 cut(s)	562, 864
Bse1I	ACTGG	3 cut(s)	663, 824, 917
BseBI	CCWGG	2 cut(s)	128, 234
BseCI	ATCGAT	1 cut(s)	696
BseDI	CCNNGG	3 cut(s)	233, 361, 705
BseGI	GGATG	2 cut(s)	304, 1017
BseLI	CCNNNNNNNGG	2 cut(s)	562, 864
BseMII	CTCAG	2 cut(s)	167, 455
BseNI	ACTGG	3 cut(s)	663, 824, 917
BseRI	GAGGAG	1 cut(s)	822
BseXI	GCAGC	6 cut(s)	20, 91, 136, 412, 466, 647
BseYI	CCCAGC	2 cut(s)	400, 572
BsgI	GTGCAG	1 cut(s)	299
BshFI	GGCC	1 cut(s)	854
BshVI	ATCGAT	1 cut(s)	696
BsiHKAI	GWGCWC	1 cut(s)	184
BsiSI	CCGG	1 cut(s)	836
BslFI	GGGAC	1 cut(s)	598
BslI	CCNNNNNNNGG	2 cut(s)	562, 864
BsmAI	GTCTC	2 cut(s)	497, 974
BsmFI	GGGAC	1 cut(s)	598
BsnI	GGCC	1 cut(s)	854
Bsp1286I	GDGCHC	1 cut(s)	184
Bsp143I	GATC	4 cut(s)	91, 135, 367, 925
Bsp1720I	GCTNAGC	1 cut(s)	606
Bsp19I	CCATGG	1 cut(s)	361
BspACI	CCGC	2 cut(s)	530, 785
BspANI	GGCC	1 cut(s)	854
BspCNI	CTCAG	2 cut(s)	168, 456
BspDI	ATCGAT	1 cut(s)	696
BspMAI	CTGCAG	3 cut(s)	10, 76, 430
BspMI	ACCTGC	2 cut(s)	489, 732
BspOI	GCTAGC	2 cut(s)	486, 605
BspPI	GGATC	3 cut(s)	86, 375, 920
BsrBI	CCGCTC	1 cut(s)	530
BsrI	ACTGG	3 cut(s)	663, 824, 917
BssECI	CCNNGG	3 cut(s)	233, 361, 705
BssMI	GATC	4 cut(s)	91, 135, 367, 925
BssT1I	CCWWGG	2 cut(s)	361, 705
Bst2UI	CCWGG	2 cut(s)	128, 234
Bst4CI	ACNGT	1 cut(s)	229
BstAPI	GCANNNNNTGC	1 cut(s)	641
BstC8I	GCNNGC	3 cut(s)	484, 603, 646
BstDEI	CTNAG	5 cut(s)	176, 351, 464, 493, 606
BstDSI	CCRYGG	1 cut(s)	361
BstEII	GGTNACC	1 cut(s)	971
BstF5I	GGATG	2 cut(s)	304, 1017
BstH2I	RGCGCY	2 cut(s)	521, 573
BstHHI	GCGC	2 cut(s)	520, 572
BstKTI	GATC	4 cut(s)	94, 138, 370, 928
BstMAI	GTCTC	2 cut(s)	497, 974
BstMBI	GATC	4 cut(s)	91, 135, 367, 925
BstMWI	GCNNNNNNNGC	5 cut(s)	515, 607, 641, 689, 782
BstNI	CCWGG	2 cut(s)	128, 234
BstNSI	RCATGY	2 cut(s)	593, 614
BstPI	GGTNACC	1 cut(s)	971
BstSCI	CCNGG	2 cut(s)	126, 232
BstSFI	CTRYAG	6 cut(s)	6, 72, 225, 426, 861, 993
BstV1I	GCAGC	6 cut(s)	20, 91, 136, 412, 466, 647
BstV2I	GAAGAC	1 cut(s)	726
BstX2I	RGATCY	1 cut(s)	367
BstYI	RGATCY	1 cut(s)	367
Bsu15I	ATCGAT	1 cut(s)	696
BsuRI	GGCC	1 cut(s)	854
BsuTUI	ATCGAT	1 cut(s)	696
BtgI	CCRYGG	1 cut(s)	361
BtsCI	GGATG	2 cut(s)	304, 1017
BtsI	GCAGTG	2 cut(s)	420, 783
BtsIMutI	CAGTG	3 cut(s)	420, 783, 924
BveI	ACCTGC	1 cut(s)	732
Cac8I	GCNNGC	3 cut(s)	484, 603, 646
CaiI	CAGNNNCTG	2 cut(s)	133, 641
CfoI	GCGC	2 cut(s)	520, 572
Cfr13I	GGNCC	3 cut(s)	124, 821, 935
ClaI	ATCGAT	1 cut(s)	696
CsiI	ACCWGGT	1 cut(s)	126
Csp6I	GTAC	2 cut(s)	418, 1012
CviAII	CATG	6 cut(s)	347, 362, 439, 590, 611, 1023
CviQI	GTAC	2 cut(s)	418, 1012
DdeI	CTNAG	5 cut(s)	176, 351, 464, 493, 606
DpnI	GATC	4 cut(s)	93, 137, 369, 927
DpnII	GATC	4 cut(s)	91, 135, 367, 925
EaeI	YGGCCR	1 cut(s)	852
Ecl136II	GAGCTC	1 cut(s)	182
Eco130I	CCWWGG	2 cut(s)	361, 705
Eco24I	GRGCYC	1 cut(s)	184
Eco47I	GGWCC	3 cut(s)	124, 821, 935
Eco47III	AGCGCT	1 cut(s)	519
Eco53kI	GAGCTC	1 cut(s)	182
Eco57I	CTGAAG	1 cut(s)	905
Eco91I	GGTNACC	1 cut(s)	971
EcoICRI	GAGCTC	1 cut(s)	182
EcoO65I	GGTNACC	1 cut(s)	971
EcoRII	CCWGG	2 cut(s)	126, 232
EcoT14I	CCWWGG	2 cut(s)	361, 705
EcoT38I	GRGCYC	1 cut(s)	184
ErhI	CCWWGG	2 cut(s)	361, 705
FaeI	CATG	6 cut(s)	350, 365, 442, 593, 614, 1026
FalI	AAGNNNNNCTT	2 cut(s)	878, 910
FaqI	GGGAC	1 cut(s)	598
FatI	CATG	6 cut(s)	346, 361, 438, 589, 610, 1022
FbaI	TGATCA	1 cut(s)	135
Fnu4HI	GCNGC	6 cut(s)	9, 105, 150, 426, 480, 636
FokI	GGATG	2 cut(s)	311, 1004
FriOI	GRGCYC	1 cut(s)	184
Fsp4HI	GCNGC	6 cut(s)	9, 105, 150, 426, 480, 636
FspBI	CTAG	2 cut(s)	483, 602
GlaI	GCGC	2 cut(s)	519, 571
GluI	GCNGC	6 cut(s)	9, 105, 150, 426, 480, 636
GsaI	CCCAGC	2 cut(s)	404, 576
HaeII	RGCGCY	2 cut(s)	521, 573
HaeIII	GGCC	1 cut(s)	854
HapII	CCGG	1 cut(s)	836
HhaI	GCGC	2 cut(s)	520, 572
Hin1II	CATG	6 cut(s)	350, 365, 442, 593, 614, 1026
Hin6I	GCGC	2 cut(s)	518, 570
HinP1I	GCGC	2 cut(s)	518, 570
HindIII	AAGCTT	1 cut(s)	673
HinfI	GANTC	2 cut(s)	20, 334
HpaII	CCGG	1 cut(s)	836
HphI	GGTGA	4 cut(s)	221, 397, 799, 922
Hpy166II	GTNNAC	2 cut(s)	420, 1012
Hpy188I	TCNGA	3 cut(s)	58, 84, 845
Hpy188III	TCNNGA	3 cut(s)	110, 175, 373
Hpy8I	GTNNAC	2 cut(s)	420, 1012
HpyAV	CCTTC	7 cut(s)	256, 497, 775, 784, 788, 796, 901
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4V	TGCA	6 cut(s)	8, 74, 280, 428, 644, 755
HpyF10VI	GCNNNNNNNGC	5 cut(s)	515, 607, 641, 689, 782
HpyF3I	CTNAG	5 cut(s)	176, 351, 464, 493, 606
Hsp92II	CATG	6 cut(s)	350, 365, 442, 593, 614, 1026
HspAI	GCGC	2 cut(s)	518, 570
Ksp22I	TGATCA	1 cut(s)	135
Kzo9I	GATC	4 cut(s)	91, 135, 367, 925
LmnI	GCTCC	4 cut(s)	16, 112, 515, 532
Lsp1109I	GCAGC	6 cut(s)	20, 91, 136, 412, 466, 647
LweI	GCATC	1 cut(s)	742
MabI	ACCWGGT	1 cut(s)	126
MaeI	CTAG	2 cut(s)	483, 602
MaeIII	GTNAC	4 cut(s)	209, 808, 826, 971
MalI	GATC	4 cut(s)	93, 137, 369, 927
MbiI	CCGCTC	1 cut(s)	530
MboI	GATC	4 cut(s)	91, 135, 367, 925
MboII	GAAGA	2 cut(s)	184, 731
MflI	RGATCY	1 cut(s)	367
MhlI	GDGCHC	1 cut(s)	184
MlsI	TGGCCA	1 cut(s)	854
MluCI	AATT	3 cut(s)	86, 114, 734
MluNI	TGGCCA	1 cut(s)	854
MlyI	GAGTC	1 cut(s)	29
MnlI	CCTC	5 cut(s)	40, 115, 199, 560, 843
Mox20I	TGGCCA	1 cut(s)	854
MscI	TGGCCA	1 cut(s)	854
MseI	TTAA	3 cut(s)	117, 159, 288
Msp20I	TGGCCA	1 cut(s)	854
MspI	CCGG	1 cut(s)	836
MspR9I	CCNGG	2 cut(s)	128, 234
MvaI	CCWGG	2 cut(s)	128, 234
MwoI	GCNNNNNNNGC	5 cut(s)	515, 607, 641, 689, 782
NcoI	CCATGG	1 cut(s)	361
NdeII	GATC	4 cut(s)	91, 135, 367, 925
NheI	GCTAGC	2 cut(s)	482, 601
NlaIII	CATG	6 cut(s)	350, 365, 442, 593, 614, 1026
NmuCI	GTSAC	2 cut(s)	209, 808
NspI	RCATGY	2 cut(s)	593, 614
PciI	ACATGT	1 cut(s)	589
PfeI	GAWTC	1 cut(s)	334
PkrI	GCNGC	6 cut(s)	10, 106, 151, 427, 481, 637
PleI	GAGTC	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	28
PscI	ACATGT	1 cut(s)	589
Psp124BI	GAGCTC	1 cut(s)	184
Psp6I	CCWGG	2 cut(s)	126, 232
PspEI	GGTNACC	1 cut(s)	971
PspFI	CCCAGC	2 cut(s)	400, 572
PspGI	CCWGG	2 cut(s)	126, 232
PspPI	GGNCC	3 cut(s)	124, 821, 935
PstI	CTGCAG	3 cut(s)	10, 76, 430
PstNI	CAGNNNCTG	2 cut(s)	133, 641
PsuI	RGATCY	1 cut(s)	367
RsaI	GTAC	2 cut(s)	419, 1013
RsaNI	GTAC	2 cut(s)	418, 1012
SacI	GAGCTC	1 cut(s)	184
SaqAI	TTAA	3 cut(s)	117, 159, 288
SatI	GCNGC	6 cut(s)	9, 105, 150, 426, 480, 636
Sau3AI	GATC	4 cut(s)	91, 135, 367, 925
Sau96I	GGNCC	3 cut(s)	124, 821, 935
SchI	GAGTC	1 cut(s)	29
ScrFI	CCNGG	2 cut(s)	128, 234
SduI	GDGCHC	1 cut(s)	184
SexAI	ACCWGGT	1 cut(s)	126
SfaNI	GCATC	1 cut(s)	742
SfcI	CTRYAG	6 cut(s)	6, 72, 225, 426, 861, 993
SinI	GGWCC	3 cut(s)	124, 821, 935
SmlI	CTYRAG	2 cut(s)	371, 977
SmoI	CTYRAG	2 cut(s)	371, 977
Sse9I	AATT	3 cut(s)	86, 114, 734
SsiI	CCGC	2 cut(s)	530, 785
SspMI	CTAG	2 cut(s)	483, 602
SstI	GAGCTC	1 cut(s)	184
StyD4I	CCNGG	2 cut(s)	126, 232
StyI	CCWWGG	2 cut(s)	361, 705
TaaI	ACNGT	1 cut(s)	229
TaqI	TCGA	1 cut(s)	696
TasI	AATT	3 cut(s)	86, 114, 734
TatI	WGTACW	1 cut(s)	417
TfiI	GAWTC	1 cut(s)	334
Tru1I	TTAA	3 cut(s)	117, 159, 288
Tru9I	TTAA	3 cut(s)	117, 159, 288
TscAI	CASTG	3 cut(s)	427, 783, 924
TseFI	GTSAC	2 cut(s)	209, 808
TseI	GCWGC	6 cut(s)	8, 104, 149, 425, 479, 635
Tsp45I	GTSAC	2 cut(s)	209, 808
TspDTI	ATGAA	1 cut(s)	315
TspGWI	ACGGA	1 cut(s)	541
TspRI	CASTG	3 cut(s)	427, 783, 924
VpaK11BI	GGWCC	3 cut(s)	124, 821, 935
XapI	RAATTY	2 cut(s)	86, 734
XceI	RCATGY	2 cut(s)	593, 614
XspI	CTAG	2 cut(s)	483, 602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.