Rmu_sc0006800.1_g000008
NAC Family

inactive poly ADP-ribose polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006800.1
OG0018534
Physical Location & Seq
Forward (+)
15629 .. 17844
2216 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 702 bp
atggacatgagggagcaagaagtgtaccttgcaaaagaagaggaaaatggtggagacgttcatctcaccatagaggacttcaaaactgatgataagccccatcctccttcctctcccgctatctttccacggccaccacagtctctgatccctagcttcctctacgcctcctcctccgccaaaacttttgggcttagaagatgcttcacgccagccctagcgccggcttcaacacgaatggagaggcagtctcgcagaccaaggggattccgtctccgagctagccgtccaagaagatcgagatgtactcgtcggccttttatgctgcttgtactgcaggaggaatccacagctgtgtcttactcacatggctgtacttatcttgacctcatccagtgcaatatgcagccaaaggatggtgtgctgttggaatacctctgtgtcaggttcaatgacatgtggaatctactagttgtgagtcaaagggggaggcatcctaggccagctttagaatatgagaaatcacaggaaaagcctgttgaaattggctcaagctctttgacaactccaaaatccccatggatgccatttaaagcgctatttgaagctatttcaaaagaagttgctccgaaagatatgaaattggttaatgttcaatatgatctattcagggtatgtaattttggattcttggtattttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PARP RST

Protein Analysis

233

Amino Acids

26.82

Weight (kDa)

9.28

Isoelectric Point (pI)

71.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RST PF12174 190 - 224 5.6e-10 RCD1-SRO-TAF4 (RST) plant domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018534)

Species Orthologous Gene IDs
pyrus_communis pycom07g04710
rosa_chinensis RchiOBHm_Chr2g0176171
rosa_laevigata RLG00000011568 RLG00000013827 RLG00000018612 RLG00000026517 RLG00000032416 RLG00000033785
rosa_multiflora Rmu_sc0006800.1_g000008
rosa_roxburghii Rroxscaffold_7G00196410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 416
AciI CCGC 2 cut(s) 117, 177
AclWI GGATC 1 cut(s) 142
AcoI YGGCCR 1 cut(s) 131
AfaI GTAC 4 cut(s) 26, 307, 333, 376
AfeI AGCGCT 1 cut(s) 597
AfiI CCNNNNNNNGG 2 cut(s) 223, 416
AflIII ACRYGT 1 cut(s) 456
AgsI TTSAA 7 cut(s) 82, 231, 451, 542, 605, 615, 656
AhlI ACTAGT 1 cut(s) 469
AleI CACNNNNGTG 1 cut(s) 353
AluBI AGCT 6 cut(s) 156, 281, 353, 506, 555, 608
AluI AGCT 6 cut(s) 156, 281, 353, 506, 555, 608
Alw26I GTCTC 4 cut(s) 48, 147, 255, 278
AlwI GGATC 1 cut(s) 142
AlwNI CAGNNNCTG 1 cut(s) 145
Aor51HI AGCGCT 1 cut(s) 597
AoxI GGCC 3 cut(s) 131, 314, 500
ApeKI GCWGC 2 cut(s) 325, 406
AspA2I CCTAGG 1 cut(s) 497
AspLEI GCGC 2 cut(s) 223, 598
AsuHPI GGTGA 1 cut(s) 58
AsuNHI GCTAGC 1 cut(s) 281
AvrII CCTAGG 1 cut(s) 497
BbvI GCAGC 2 cut(s) 312, 418
BccI CCATC 2 cut(s) 108, 410
BceAI ACGGC 2 cut(s) 146, 270
BcoDI GTCTC 4 cut(s) 48, 147, 255, 278
BcuI ACTAGT 1 cut(s) 469
BfaI CTAG 5 cut(s) 153, 218, 282, 470, 498
BfmI CTRYAG 1 cut(s) 335
BfoI RGCGCY 2 cut(s) 224, 599
BisI GCNGC 2 cut(s) 326, 407
BlnI CCTAGG 1 cut(s) 497
BlsI GCNGC 2 cut(s) 327, 408
BmsI GCATC 3 cut(s) 191, 502, 573
BmtI GCTAGC 1 cut(s) 285
BplI GAGNNNNNCTC 4 cut(s) 235, 267, 292, 324
BpuEI CTTGAG 1 cut(s) 535
BsaJI CCNNGG 4 cut(s) 128, 260, 497, 578
BsaXI ACNNNNNCTCC 4 cut(s) 155, 185, 233, 263
Bsc4I CCNNNNNNNGG 2 cut(s) 223, 416
Bse118I RCCGGY 1 cut(s) 223
Bse1I ACTGG 1 cut(s) 394
BseDI CCNNGG 4 cut(s) 128, 260, 497, 578
BseGI GGATG 5 cut(s) 100, 390, 421, 493, 588
BseLI CCNNNNNNNGG 2 cut(s) 223, 416
BseNI ACTGG 1 cut(s) 394
BseRI GAGGAG 2 cut(s) 160, 163
BseXI GCAGC 2 cut(s) 312, 418
BshFI GGCC 3 cut(s) 133, 316, 502
BsiSI CCGG 1 cut(s) 224
BslI CCNNNNNNNGG 2 cut(s) 223, 416
BsmAI GTCTC 4 cut(s) 48, 147, 255, 278
BsmBI CGTCTC 2 cut(s) 48, 278
BsnI GGCC 3 cut(s) 133, 316, 502
Bsp143I GATC 3 cut(s) 147, 296, 661
Bsp19I CCATGG 1 cut(s) 578
BspACI CCGC 2 cut(s) 117, 177
BspANI GGCC 3 cut(s) 133, 316, 502
BspMAI CTGCAG 1 cut(s) 339
BspOI GCTAGC 1 cut(s) 285
BspPI GGATC 1 cut(s) 142
BsrFI RCCGGY 1 cut(s) 223
BsrI ACTGG 1 cut(s) 394
BssAI RCCGGY 1 cut(s) 223
BssECI CCNNGG 4 cut(s) 128, 260, 497, 578
BssMI GATC 3 cut(s) 147, 296, 661
BssT1I CCWWGG 3 cut(s) 260, 497, 578
Bst4CI ACNGT 1 cut(s) 141
Bst6I CTCTTC 1 cut(s) 33
BstC8I GCNNGC 4 cut(s) 213, 225, 283, 504
BstDEI CTNAG 1 cut(s) 194
BstDSI CCRYGG 2 cut(s) 128, 578
BstF5I GGATG 5 cut(s) 100, 390, 421, 493, 588
BstH2I RGCGCY 2 cut(s) 224, 599
BstHHI GCGC 2 cut(s) 223, 598
BstKTI GATC 3 cut(s) 150, 299, 664
BstMAI GTCTC 4 cut(s) 48, 147, 255, 278
BstMBI GATC 3 cut(s) 147, 296, 661
BstMWI GCNNNNNNNGC 3 cut(s) 322, 334, 499
BstNSI RCATGY 1 cut(s) 460
BstSFI CTRYAG 1 cut(s) 335
BstV1I GCAGC 2 cut(s) 312, 418
BsuRI GGCC 3 cut(s) 133, 316, 502
BtgI CCRYGG 2 cut(s) 128, 578
BtsCI GGATG 5 cut(s) 100, 390, 421, 493, 588
BtsIMutI CAGTG 1 cut(s) 401
Cac8I GCNNGC 4 cut(s) 213, 225, 283, 504
CaiI CAGNNNCTG 1 cut(s) 145
CfoI GCGC 2 cut(s) 223, 598
Cfr10I RCCGGY 1 cut(s) 223
Csp6I GTAC 4 cut(s) 25, 306, 332, 375
CviAII CATG 4 cut(s) 7, 368, 457, 579
CviQI GTAC 4 cut(s) 25, 306, 332, 375
DdeI CTNAG 1 cut(s) 194
DpnI GATC 3 cut(s) 149, 298, 663
DpnII GATC 3 cut(s) 147, 296, 661
DraI TTTAAA 1 cut(s) 592
EaeI YGGCCR 1 cut(s) 131
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
EciI GGCGGA 1 cut(s) 166
Eco130I CCWWGG 3 cut(s) 260, 497, 578
Eco47III AGCGCT 1 cut(s) 597
EcoT14I CCWWGG 3 cut(s) 260, 497, 578
ErhI CCWWGG 3 cut(s) 260, 497, 578
Esp3I CGTCTC 2 cut(s) 48, 278
FaeI CATG 4 cut(s) 10, 371, 460, 582
FalI AAGNNNNNCTT 2 cut(s) 12, 44
FatI CATG 4 cut(s) 6, 367, 456, 578
FauI CCCGC 1 cut(s) 124
Fnu4HI GCNGC 2 cut(s) 326, 407
FokI GGATG 5 cut(s) 87, 377, 428, 480, 595
Fsp4HI GCNGC 2 cut(s) 326, 407
FspBI CTAG 5 cut(s) 153, 218, 282, 470, 498
GlaI GCGC 2 cut(s) 222, 597
GluI GCNGC 2 cut(s) 326, 407
HaeII RGCGCY 2 cut(s) 224, 599
HaeIII GGCC 3 cut(s) 133, 316, 502
HapII CCGG 1 cut(s) 224
HhaI GCGC 2 cut(s) 223, 598
Hin1II CATG 4 cut(s) 10, 371, 460, 582
Hin6I GCGC 2 cut(s) 221, 596
HinP1I GCGC 2 cut(s) 221, 596
HinfI GANTC 5 cut(s) 267, 344, 463, 478, 687
HpaII CCGG 1 cut(s) 224
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 3 cut(s) 147, 278, 630
Hpy188III TCNNGA 2 cut(s) 300, 383
Hpy8I GTNNAC 1 cut(s) 25
Hpy99I CGWCG 1 cut(s) 315
HpyAV CCTTC 1 cut(s) 117
HpyCH4III ACNGT 1 cut(s) 141
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 4 cut(s) 32, 337, 399, 406
HpyF10VI GCNNNNNNNGC 3 cut(s) 322, 334, 499
HpyF3I CTNAG 1 cut(s) 194
HpySE526I ACGT 1 cut(s) 57
Hsp92II CATG 4 cut(s) 10, 371, 460, 582
HspAI GCGC 2 cut(s) 221, 596
KroI GCCGGC 1 cut(s) 223
KroNI GCCGGC 1 cut(s) 225
Kzo9I GATC 3 cut(s) 147, 296, 661
LmnI GCTCC 2 cut(s) 13, 631
LpnPI CCDG 9 cut(s) 225, 237, 323, 407, 430, 512, 516, 549, 655
Lsp1109I GCAGC 2 cut(s) 312, 418
LweI GCATC 3 cut(s) 191, 502, 573
MaeI CTAG 5 cut(s) 153, 218, 282, 470, 498
MaeII ACGT 1 cut(s) 57
MalI GATC 3 cut(s) 149, 298, 663
MboI GATC 3 cut(s) 147, 296, 661
MboII GAAGA 3 cut(s) 50, 210, 306
MluCI AATT 3 cut(s) 543, 641, 679
MlyI GAGTC 1 cut(s) 487
MmeI TCCRAC 1 cut(s) 408
MroNI GCCGGC 1 cut(s) 223
MseI TTAA 2 cut(s) 591, 648
MslI CAYNNNNRTG 1 cut(s) 353
MspA1I CMGCKG 1 cut(s) 353
MspI CCGG 1 cut(s) 224
MwoI GCNNNNNNNGC 3 cut(s) 322, 334, 499
NaeI GCCGGC 1 cut(s) 225
NcoI CCATGG 1 cut(s) 578
NdeII GATC 3 cut(s) 147, 296, 661
NgoMIV GCCGGC 1 cut(s) 223
NheI GCTAGC 1 cut(s) 281
NlaIII CATG 4 cut(s) 10, 371, 460, 582
NspI RCATGY 1 cut(s) 460
OliI CACNNNNGTG 1 cut(s) 353
PciI ACATGT 1 cut(s) 456
PdiI GCCGGC 1 cut(s) 225
PfeI GAWTC 4 cut(s) 267, 344, 463, 687
PflMI CCANNNNNTGG 1 cut(s) 416
PkrI GCNGC 2 cut(s) 327, 408
PleI GAGTC 1 cut(s) 486
PpsI GAGTC 1 cut(s) 486
PscI ACATGT 1 cut(s) 456
PstI CTGCAG 1 cut(s) 339
PstNI CAGNNNCTG 1 cut(s) 145
PvuII CAGCTG 1 cut(s) 353
RsaI GTAC 4 cut(s) 26, 307, 333, 376
RsaNI GTAC 4 cut(s) 25, 306, 332, 375
RseI CAYNNNNRTG 1 cut(s) 353
SaqAI TTAA 2 cut(s) 591, 648
SatI GCNGC 2 cut(s) 326, 407
Sau3AI GATC 3 cut(s) 147, 296, 661
SchI GAGTC 1 cut(s) 487
SfaNI GCATC 3 cut(s) 191, 502, 573
SfcI CTRYAG 1 cut(s) 335
SmiMI CAYNNNNRTG 1 cut(s) 353
SmlI CTYRAG 1 cut(s) 550
SmoI CTYRAG 1 cut(s) 550
SpeI ACTAGT 1 cut(s) 469
Sse9I AATT 3 cut(s) 543, 641, 679
SsiI CCGC 2 cut(s) 117, 177
SspMI CTAG 5 cut(s) 153, 218, 282, 470, 498
StyI CCWWGG 3 cut(s) 260, 497, 578
TaaI ACNGT 1 cut(s) 141
TaiI ACGT 1 cut(s) 60
TaqI TCGA 1 cut(s) 299
TasI AATT 3 cut(s) 543, 641, 679
TatI WGTACW 3 cut(s) 305, 331, 374
TfiI GAWTC 4 cut(s) 267, 344, 463, 687
Tru1I TTAA 2 cut(s) 591, 648
Tru9I TTAA 2 cut(s) 591, 648
TscAI CASTG 1 cut(s) 401
TseI GCWGC 2 cut(s) 325, 406
TspDTI ATGAA 2 cut(s) 50, 653
TspGWI ACGGA 1 cut(s) 260
TspRI CASTG 1 cut(s) 401
Van91I CCANNNNNTGG 1 cut(s) 416
XceI RCATGY 1 cut(s) 460
XcmI CCANNNNNNNNNTGG 1 cut(s) 576
XmaJI CCTAGG 1 cut(s) 497
XspI CTAG 5 cut(s) 153, 218, 282, 470, 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.