Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006896.1

Orthogroup ID

OG0005577

Physical Location & Seq

Genomic Coordinates Reverse (-)

78321 .. 78805

Gene Structure 485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006896.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

atgtctgctggtgctgttgatttgctagagaagatgcttatctttgacccaaacaggcgcattacagttgatgaggctctttgccacccatacttggcacctcttcatgatattaatgaggagcctgtctgcccaagtcctttcagttttgactttgagcaaccatcgtttactgaagagaacatcaaggaactcatatggagagagacagtaaagttcaatccagatccaattcagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000165 GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0000911 GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004707 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005856 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0006971 GO:0006972 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007112 GO:0007140 GO:0007154 GO:0007165 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009504 GO:0009555 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009627 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009751 GO:0009753 GO:0009755 GO:0009814 GO:0009861 GO:0009862 GO:0009863 GO:0009867 GO:0009868 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0014070 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0023014 GO:0023052 GO:0030865 GO:0031122 GO:0032260 GO:0032501 GO:0032502 GO:0032504 GO:0032506 GO:0032870 GO:0033206 GO:0033993 GO:0035556 GO:0035690 GO:0035821 GO:0036211 GO:0042221 GO:0042493 GO:0042539 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043622 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0045087 GO:0046677 GO:0048229 GO:0048232 GO:0048285 GO:0048609 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051301 GO:0051321 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052306 GO:0052308 GO:0052552 GO:0052553 GO:0052564 GO:0052572 GO:0060255 GO:0061640 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0071704 GO:0071840 GO:0075136 GO:0080026 GO:0097305 GO:0097435 GO:0098542 GO:0140013 GO:0140096 GO:1901564 GO:1901698 GO:1901700 GO:1901701 GO:1902410 GO:1903046 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko01521 ko01522 ko01524 ko04010 ko04011 ko04012 ko04013 ko04014 ko04015 ko04016 ko04022 ko04024 ko04062 ko04066 ko04068 ko04071 ko04072 ko04114 ko04138 ko04139 ko04140 ko04150 ko04151 ko04210 ko04214 ko04218 ko04261 ko04270 ko04320 ko04350 ko04360 ko04370 ko04371 ko04380 ko04510 ko04520 ko04540 ko04550 ko04611 ko04620 ko04621 ko04650 ko04657 ko04658 ko04659 ko04660 ko04662 ko04664 ko04666 ko04668 ko04713 ko04720 ko04722 ko04723 ko04724 ko04725 ko04726 ko04730 ko04810 ko04910 ko04912 ko04914 ko04915 ko04916 ko04917 ko04919 ko04921 ko04926 ko04930 ko04933 ko04934 ko04960 ko05010 ko05020 ko05034 ko05131 ko05132 ko05133 ko05140 ko05142 ko05145 ko05152 ko05160 ko05161 ko05164 ko05165 ko05167 ko05200 ko05203 ko05205 ko05206 ko05210 ko05211 ko05212 ko05213 ko05214 ko05215 ko05216 ko05218 ko05219 ko05220 ko05221 ko05223 ko05224 ko05225 ko05226 ko05230 ko05231 ko05418 map01521 map01522 map01524 map04010 map04011 map04012 map04013 map04014 map04015 map04016 map04022 map04024 map04062 map04066 map04068 map04071 map04072 map04114 map04138 map04139 map04140 map04150 map04151 map04210 map04214 map04218 map04261 map04270 map04320 map04350 map04360 map04370 map04371 map04380 map04510 map04520 map04540 map04550 map04611 map04620 map04621 map04650 map04657 map04658 map04659 map04660 map04662 map04664 map04666 map04668 map04713 map04720 map04722 map04723 map04724 map04725 map04726 map04730 map04810 map04910 map04912 map04914 map04915 map04916 map04917 map04919 map04921 map04926 map04930 map04933 map04934 map04960 map05010 map05020 map05034 map05131 map05132 map05133 map05140 map05142 map05145 map05152 map05160 map05161 map05164 map05165 map05167 map05200 map05203 map05205 map05206 map05210 map05211 map05212 map05213 map05214 map05215 map05216 map05218 map05219 map05220 map05221 map05223 map05224 map05225 map05226 map05230 map05231 map05418

Pfam Domains

Protein Families

Pkinase

Protein Analysis

79

Amino Acids

9.15

Weight (kDa)

4.36

Isoelectric Point (pI)

68.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005577)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01560 AT1G01560 AT1G01560 AT1G01560 AT2G46070 AT2G46070 AT2G46070 AT4G01370
fragaria_vesca	FvH4_7g15060
malus_domestica	MD00G1111900.v1.1 MD01G1069100.v1.1
prunus_persica	Prupe.2G175200_v2.0.a1 Prupe.2G175200_v2.0.a1 Prupe.2G175200_v2.0.a1
pyrus_communis	pycom07g13000 pycom07g13010
rosa_chinensis	RchiOBHm_Chr1g0357171
rosa_laevigata	RLG00000028047
rosa_multiflora	Rmu_sc0005967.1_g000008 Rmu_sc0006896.1_g000017
rosa_roxburghii	Rroxscaffold_4G00299020
rosa_rugosa	Rorug01G0254500 Rorug01G0254600
rosa_samantha	Rh1AG268800 Rh1BG236500 Rh1CG252500 Rh1DG263600
rosa_wichuraiana	Rw1G023720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	97
AclWI	GGATC	1 cut(s)	221
AcuI	CTGAAG	1 cut(s)	195
AfiI	CCNNNNNNNGG	1 cut(s)	94
AgsI	TTSAA	1 cut(s)	220
Alw26I	GTCTC	1 cut(s)	200
AlwI	GGATC	1 cut(s)	221
AseI	ATTAAT	1 cut(s)	114
AspLEI	GCGC	1 cut(s)	60
BanI	GGYRCC	1 cut(s)	97
BccI	CCATC	1 cut(s)	172
BcoDI	GTCTC	1 cut(s)	200
BfaI	CTAG	1 cut(s)	26
BmiI	GGNNCC	2 cut(s)	99, 123
BmsI	GCATC	1 cut(s)	24
BsaBI	GATNNNNATC	1 cut(s)	38
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
Bse8I	GATNNNNATC	1 cut(s)	38
BseJI	GATNNNNATC	1 cut(s)	38
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseRI	GAGGAG	1 cut(s)	134
BshNI	GGYRCC	1 cut(s)	97
BslI	CCNNNNNNNGG	1 cut(s)	94
BsmAI	GTCTC	1 cut(s)	200
Bsp143I	GATC	1 cut(s)	226
BspHI	TCATGA	1 cut(s)	106
BspLI	GGNNCC	2 cut(s)	99, 123
BspPI	GGATC	1 cut(s)	221
BspT107I	GGYRCC	1 cut(s)	97
BssMI	GATC	1 cut(s)	226
Bst4CI	ACNGT	2 cut(s)	67, 211
Bst6I	CTCTTC	2 cut(s)	108, 171
BstHHI	GCGC	1 cut(s)	60
BstKTI	GATC	1 cut(s)	229
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	1 cut(s)	226
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
CciI	TCATGA	1 cut(s)	106
CfoI	GCGC	1 cut(s)	60
CviAII	CATG	1 cut(s)	107
CviJI	RGCY	2 cut(s)	77, 124
CviKI_1	RGCY	2 cut(s)	77, 124
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
Eam1104I	CTCTTC	2 cut(s)	108, 171
EarI	CTCTTC	2 cut(s)	108, 171
Eco57I	CTGAAG	1 cut(s)	195
FaeI	CATG	1 cut(s)	110
FaiI	YATR	4 cut(s)	91, 108, 197, 199
FatI	CATG	1 cut(s)	106
FauNDI	CATATG	1 cut(s)	197
FspBI	CTAG	1 cut(s)	26
GlaI	GCGC	1 cut(s)	59
HhaI	GCGC	1 cut(s)	60
Hin1II	CATG	1 cut(s)	110
Hin6I	GCGC	1 cut(s)	58
HinP1I	GCGC	1 cut(s)	58
Hpy166II	GTNNAC	1 cut(s)	171
Hpy188III	TCNNGA	2 cut(s)	107, 224
Hpy8I	GTNNAC	1 cut(s)	171
HpyCH4III	ACNGT	2 cut(s)	67, 211
Hsp92II	CATG	1 cut(s)	110
HspAI	GCGC	1 cut(s)	58
Kzo9I	GATC	1 cut(s)	226
LmnI	GCTCC	1 cut(s)	121
LpnPI	CCDG	2 cut(s)	40, 138
LweI	GCATC	1 cut(s)	24
MaeI	CTAG	1 cut(s)	26
MalI	GATC	1 cut(s)	228
MboI	GATC	1 cut(s)	226
MboII	GAAGA	3 cut(s)	43, 95, 188
MflI	RGATCY	1 cut(s)	226
MluCI	AATT	1 cut(s)	231
MnlI	CCTC	3 cut(s)	67, 111, 112
MseI	TTAA	1 cut(s)	114
NdeI	CATATG	1 cut(s)	197
NdeII	GATC	1 cut(s)	226
NlaIII	CATG	1 cut(s)	110
NlaIV	GGNNCC	2 cut(s)	99, 123
PagI	TCATGA	1 cut(s)	106
PshBI	ATTAAT	1 cut(s)	114
PspN4I	GGNNCC	2 cut(s)	99, 123
PsuI	RGATCY	1 cut(s)	226
SaqAI	TTAA	1 cut(s)	114
Sau3AI	GATC	1 cut(s)	226
SetI	ASST	1 cut(s)	103
SfaNI	GCATC	1 cut(s)	24
SgeI	CNNG	9 cut(s)	21, 38, 67, 106, 119, 137, 147, 199, 236
Sse9I	AATT	1 cut(s)	231
SspMI	CTAG	1 cut(s)	26
TaaI	ACNGT	2 cut(s)	67, 211
TasI	AATT	1 cut(s)	231
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TspDTI	ATGAA	1 cut(s)	95
VspI	ATTAAT	1 cut(s)	114
XspI	CTAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.