Rmu_sc0007276.1_g000002

SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007276.1
OG0015044
Physical Location & Seq
Forward (+)
781 .. 1671
891 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 891 bp
atggattccgtctccaaatgttcgagaacatgtggtttgattagtactttgtcgagtggtgaagatgaggatgggcttgaggtgcctgagattaatctgtttaagcctgactcggagcactttgggtactcaaatgagaagaagcttgatgcgagtaggattttaagtattttggatgtcaattcgattgttgaggattcgatttcgtcaaaggttttggggaagaacagtgattactatggtgttgggctttgggtacttgcttcatttatcaaccattcatgtattcccaatgcaaggcgtttgcatgttggggactatgtgattgttcatgcttcaagagatgtcaaggctggtgacgagctaacatttgcatatttcgatgtgctgaatccgttggaaaagcgcaacgaaatgtcaaagacttgggggtttaggtgcaactgcaggaggtgtaagtttgaggctgaactatgttcgaggcaagaaggcattggagagattgagatgggtttcgaaagagggatggattctggtgctgcggtctataggctcgaggaaggcatgagaaaatggaaggtgaaggaaaaggaaaaagggtacttgagagcttcattttgggctgcatatggctcagagaagttgatgagaagttggggaagacggatcccaatgatggagtccgtggttgatagcattgtggaagctgtgggaagtgatgagagggtgttgaagatggtggtggagaagataaagaaaggtaatggtggcagttcagtggtggaaatagaaagagctttgaagttgggaagaggagtttatggaaaagtaatgaagaagcaagcaatgaagagtcttcttggccttggcattcttgaacccagctattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SET

Protein Analysis

296

Amino Acids

33.15

Weight (kDa)

8.06

Isoelectric Point (pI)

33.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 77 - 126 2.8e-10 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015044)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26760
fragaria_vesca FvH4_4g31050
malus_domestica MD13G1069000.v1.1
prunus_persica Prupe.1G278000_v2.0.a1
pyrus_communis pycom13g06180 pycom16g06040
rosa_chinensis RchiOBHm_Chr4g0439431
rosa_laevigata RLG00000006273
rosa_multiflora Rmu_sc0007276.1_g000002
rosa_roxburghii Rroxscaffold_5G00380340
rosa_rugosa Rorug04G0318100
rosa_samantha Rh4AG369400 Rh4BG381200 Rh4CG395800 Rh4DG375900
rosa_wichuraiana Rw4G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 82
AciI CCGC 1 cut(s) 542
AclWI GGATC 2 cut(s) 661, 674
AfaI GTAC 4 cut(s) 46, 128, 258, 602
AfiI CCNNNNNNNGG 2 cut(s) 297, 676
AflIII ACRYGT 1 cut(s) 29
AgsI TTSAA 4 cut(s) 339, 733, 802, 878
AluBI AGCT 6 cut(s) 145, 364, 611, 707, 797, 885
AluI AGCT 6 cut(s) 145, 364, 611, 707, 797, 885
Alw21I GWGCWC 1 cut(s) 120
Alw26I GTCTC 1 cut(s) 16
AlwI GGATC 2 cut(s) 661, 674
Ama87I CYCGRG 1 cut(s) 554
AoxI GGCC 1 cut(s) 862
ApeKI GCWGC 2 cut(s) 539, 623
AseI ATTAAT 1 cut(s) 93
AspLEI GCGC 1 cut(s) 408
AsuHPI GGTGA 3 cut(s) 71, 368, 592
AsuII TTCGAA 1 cut(s) 516
AvaI CYCGRG 1 cut(s) 554
BamHI GGATCC 1 cut(s) 666
BanI GGYRCC 1 cut(s) 82
BbsI GAAGAC 2 cut(s) 667, 848
Bbv12I GWGCWC 1 cut(s) 120
BbvI GCAGC 2 cut(s) 526, 610
BccI CCATC 5 cut(s) 65, 502, 520, 670, 730
BcoDI GTCTC 1 cut(s) 16
BfmI CTRYAG 2 cut(s) 445, 547
BisI GCNGC 2 cut(s) 540, 624
BlsI GCNGC 2 cut(s) 541, 625
BmcAI AGTACT 1 cut(s) 46
BmeT110I CYCGRG 1 cut(s) 554
BmiI GGNNCC 2 cut(s) 84, 668
BmsI GCATC 1 cut(s) 139
BpiI GAAGAC 2 cut(s) 667, 848
Bpu14I TTCGAA 1 cut(s) 516
BpuEI CTTGAG 2 cut(s) 98, 625
BsaJI CCNNGG 2 cut(s) 684, 865
Bsc4I CCNNNNNNNGG 2 cut(s) 297, 676
Bse3DI GCAATG 1 cut(s) 852
BseDI CCNNGG 2 cut(s) 684, 865
BseGI GGATG 3 cut(s) 76, 181, 531
BseLI CCNNNNNNNGG 2 cut(s) 297, 676
BseMI GCAATG 1 cut(s) 852
BseMII CTCAG 2 cut(s) 78, 648
BseRI GAGGAG 1 cut(s) 828
BseXI GCAGC 2 cut(s) 526, 610
BseYI CCCAGC 1 cut(s) 881
BshFI GGCC 1 cut(s) 864
BshNI GGYRCC 1 cut(s) 82
BsiHKAI GWGCWC 1 cut(s) 120
BsiHKCI CYCGRG 1 cut(s) 554
BslFI GGGAC 1 cut(s) 329
BslI CCNNNNNNNGG 2 cut(s) 297, 676
BsmAI GTCTC 1 cut(s) 16
BsmBI CGTCTC 1 cut(s) 16
BsmFI GGGAC 1 cut(s) 329
BsmI GAATGC 1 cut(s) 870
BsnI GGCC 1 cut(s) 864
BsoBI CYCGRG 1 cut(s) 554
Bsp119I TTCGAA 1 cut(s) 516
Bsp1286I GDGCHC 1 cut(s) 120
Bsp143I GATC 1 cut(s) 666
BspACI CCGC 1 cut(s) 542
BspANI GGCC 1 cut(s) 864
BspCNI CTCAG 2 cut(s) 79, 647
BspLI GGNNCC 2 cut(s) 84, 668
BspMAI CTGCAG 1 cut(s) 449
BspPI GGATC 2 cut(s) 661, 674
BspT104I TTCGAA 1 cut(s) 516
BspT107I GGYRCC 1 cut(s) 82
BsrDI GCAATG 1 cut(s) 852
BssECI CCNNGG 2 cut(s) 684, 865
BssMI GATC 1 cut(s) 666
BssT1I CCWWGG 1 cut(s) 865
Bst4CI ACNGT 1 cut(s) 230
Bst6I CTCTTC 2 cut(s) 805, 845
BstBI TTCGAA 1 cut(s) 516
BstC8I GCNNGC 1 cut(s) 843
BstDEI CTNAG 2 cut(s) 87, 634
BstDSI CCRYGG 1 cut(s) 684
BstF5I GGATG 3 cut(s) 76, 181, 531
BstHHI GCGC 1 cut(s) 408
BstKTI GATC 1 cut(s) 669
BstMAI GTCTC 1 cut(s) 16
BstMBI GATC 1 cut(s) 666
BstMWI GCNNNNNNNGC 1 cut(s) 82
BstNSI RCATGY 2 cut(s) 33, 311
BstSFI CTRYAG 2 cut(s) 445, 547
BstV1I GCAGC 2 cut(s) 526, 610
BstV2I GAAGAC 2 cut(s) 667, 848
BstX2I RGATCY 1 cut(s) 666
BstYI RGATCY 1 cut(s) 666
BsuRI GGCC 1 cut(s) 864
BtgI CCRYGG 1 cut(s) 684
BtsCI GGATG 3 cut(s) 76, 181, 531
BtsIMutI CAGTG 2 cut(s) 235, 783
Cac8I GCNNGC 1 cut(s) 843
CfoI GCGC 1 cut(s) 408
Csp6I GTAC 4 cut(s) 45, 127, 257, 601
CviAII CATG 5 cut(s) 30, 282, 308, 332, 565
CviQI GTAC 4 cut(s) 45, 127, 257, 601
DdeI CTNAG 2 cut(s) 87, 634
DpnI GATC 1 cut(s) 668
DpnII GATC 1 cut(s) 666
Eam1104I CTCTTC 2 cut(s) 805, 845
EarI CTCTTC 2 cut(s) 805, 845
Eco130I CCWWGG 1 cut(s) 865
Eco88I CYCGRG 1 cut(s) 554
EcoT14I CCWWGG 1 cut(s) 865
ErhI CCWWGG 1 cut(s) 865
Esp3I CGTCTC 1 cut(s) 16
FaeI CATG 5 cut(s) 33, 285, 311, 335, 568
FaqI GGGAC 1 cut(s) 329
FatI CATG 5 cut(s) 29, 281, 307, 331, 564
FauNDI CATATG 1 cut(s) 628
Fnu4HI GCNGC 2 cut(s) 540, 624
FokI GGATG 3 cut(s) 83, 188, 538
Fsp4HI GCNGC 2 cut(s) 540, 624
GlaI GCGC 1 cut(s) 407
GluI GCNGC 2 cut(s) 540, 624
GsaI CCCAGC 1 cut(s) 885
HaeIII GGCC 1 cut(s) 864
HhaI GCGC 1 cut(s) 408
Hin1II CATG 5 cut(s) 33, 285, 311, 335, 568
Hin6I GCGC 1 cut(s) 406
HinP1I GCGC 1 cut(s) 406
HindIII AAGCTT 1 cut(s) 143
HinfI GANTC 7 cut(s) 5, 110, 197, 391, 530, 680, 853
HphI GGTGA 3 cut(s) 71, 368, 592
Hpy188I TCNGA 2 cut(s) 115, 637
Hpy188III TCNNGA 3 cut(s) 24, 339, 875
HpyAV CCTTC 4 cut(s) 482, 554, 571, 577
HpyCH4III ACNGT 1 cut(s) 230
HpyCH4V TGCA 6 cut(s) 296, 307, 374, 441, 447, 626
HpyF10VI GCNNNNNNNGC 1 cut(s) 82
HpyF3I CTNAG 2 cut(s) 87, 634
Hsp92II CATG 5 cut(s) 33, 285, 311, 335, 568
HspAI GCGC 1 cut(s) 406
Kzo9I GATC 1 cut(s) 666
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 5 cut(s) 99, 120, 339, 433, 519
Lsp1109I GCAGC 2 cut(s) 526, 610
LweI GCATC 1 cut(s) 139
MaeIII GTNAC 1 cut(s) 356
MalI GATC 1 cut(s) 668
MboI GATC 1 cut(s) 666
MflI RGATCY 1 cut(s) 666
MhlI GDGCHC 1 cut(s) 120
MluCI AATT 1 cut(s) 181
MlyI GAGTC 3 cut(s) 104, 689, 862
MmeI TCCRAC 1 cut(s) 378
MseI TTAA 3 cut(s) 93, 102, 164
Mva1269I GAATGC 1 cut(s) 870
MwoI GCNNNNNNNGC 1 cut(s) 82
NdeI CATATG 1 cut(s) 628
NdeII GATC 1 cut(s) 666
NlaIII CATG 5 cut(s) 33, 285, 311, 335, 568
NlaIV GGNNCC 2 cut(s) 84, 668
NmuCI GTSAC 1 cut(s) 356
NspI RCATGY 2 cut(s) 33, 311
NspV TTCGAA 1 cut(s) 516
PaeR7I CTCGAG 1 cut(s) 554
PciI ACATGT 1 cut(s) 29
PctI GAATGC 1 cut(s) 870
PfeI GAWTC 4 cut(s) 5, 197, 391, 530
PkrI GCNGC 2 cut(s) 541, 625
PleI GAGTC 3 cut(s) 104, 688, 861
PpsI GAGTC 3 cut(s) 104, 688, 861
PscI ACATGT 1 cut(s) 29
PshBI ATTAAT 1 cut(s) 93
PspFI CCCAGC 1 cut(s) 881
PspN4I GGNNCC 2 cut(s) 84, 668
PspXI VCTCGAGB 1 cut(s) 554
PsrI GAACNNNNNNTAC 2 cut(s) 218, 250
PstI CTGCAG 1 cut(s) 449
PsuI RGATCY 1 cut(s) 666
RsaI GTAC 4 cut(s) 46, 128, 258, 602
RsaNI GTAC 4 cut(s) 45, 127, 257, 601
SaqAI TTAA 3 cut(s) 93, 102, 164
SatI GCNGC 2 cut(s) 540, 624
Sau3AI GATC 1 cut(s) 666
ScaI AGTACT 1 cut(s) 46
SchI GAGTC 3 cut(s) 104, 689, 862
SduI GDGCHC 1 cut(s) 120
SfaNI GCATC 1 cut(s) 139
SfcI CTRYAG 2 cut(s) 445, 547
Sfr274I CTCGAG 1 cut(s) 554
SfuI TTCGAA 1 cut(s) 516
SlaI CTCGAG 1 cut(s) 554
SmlI CTYRAG 3 cut(s) 77, 554, 604
SmoI CTYRAG 3 cut(s) 77, 554, 604
Sse9I AATT 1 cut(s) 181
SsiI CCGC 1 cut(s) 542
StyI CCWWGG 1 cut(s) 865
TaaI ACNGT 1 cut(s) 230
TaqI TCGA 8 cut(s) 23, 53, 185, 200, 381, 479, 516, 555
TasI AATT 1 cut(s) 181
TatI WGTACW 1 cut(s) 44
TfiI GAWTC 4 cut(s) 5, 197, 391, 530
Tru1I TTAA 3 cut(s) 93, 102, 164
Tru9I TTAA 3 cut(s) 93, 102, 164
TscAI CASTG 2 cut(s) 235, 783
TseFI GTSAC 1 cut(s) 356
TseI GCWGC 2 cut(s) 539, 623
Tsp45I GTSAC 1 cut(s) 356
TspDTI ATGAA 6 cut(s) 255, 270, 320, 603, 848, 863
TspGWI ACGGA 3 cut(s) 384, 673, 679
TspRI CASTG 2 cut(s) 235, 783
VspI ATTAAT 1 cut(s) 93
XceI RCATGY 2 cut(s) 33, 311
XhoI CTCGAG 1 cut(s) 554
ZrmI AGTACT 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.