Rmu_sc0007483.1_g000001

AarF domain-containing protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007483.1
OG0008646
Physical Location & Seq
Reverse (-)
1 .. 3502
3502 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1128 bp
atgaggaatgtctttgccactgtcaagcgtcaccgccatgccactctcctctcccaaactctatgccatgaagtttatgtggagaccataatacagaaatgcatacctttgggatgccacaagtttattgaaattggatggaaacaacacaatgggtctccatattactggctacagcgacattctttttccacgggtttcaccagcgtgcacggtgagagtccgtccgccgaatatgcaaagttgaggaaggagtcactagaaagtgaatttggacatgctcttggagctaatcgctccagaagtttttctgctgcctaccgttttggtccatttttggctttgtatagagcagcaattatttcgtttcacgtgttgaagctaacaatctggcaattctttgttcaagacataaggaaacgtgccatcaagtttcgtgaaactcttatccgcttgggacctttctatatcaagcttggtcaggctttgagcactaggccagatatactaccaactgaatactgccaagagcttgttaagttacaggatcaaatacccccatttccaacccctgtagctattaaatctattgaatcccagcttggagttcgtgtttcagacatttttgctgatattagcccacagcctattgctgcagcatccctagggcaggtctataaagctcacctgcactctggggagctggtagctgttaaagtacaaaggcctggcatgtcactttcattgacccttgatgccttgttattccatatgattgggggccaattaaagcgatttgccaaggcccgcaaagatctattagtggcagtgaatgagatggtgaggcacatgtttgatgaaattgattacattctagaggcaaaaaatgctgaacgttttgcttctctctatgcttcacatccacgtgatgagaaaaaggattatccaaatgctacagctgggaaaactcgtagacataaagaggcaaactgtataaaagtgccaaaaatatattgggaccttacccgtagggcagtgctgacaatggagtggattgatggaataaagcttacagatgaaattggcctaaagacggcctttctgaacagaaaagaactcattgaccag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC1

Protein Analysis

376

Amino Acids

42.98

Weight (kDa)

9.58

Isoelectric Point (pI)

43.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC1 PF03109 180 - 374 4.4e-47 ABC1 atypical kinase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 696
Acc36I ACCTGC 2 cut(s) 661, 696
AccI GTMKAC 1 cut(s) 973
AciI CCGC 4 cut(s) 34, 228, 451, 808
AclI AACGTT 1 cut(s) 895
AclWI GGATC 1 cut(s) 555
AcsI RAATTY 1 cut(s) 269
AcvI CACGTG 2 cut(s) 373, 926
AfaI GTAC 1 cut(s) 720
AfiI CCNNNNNNNGG 2 cut(s) 670, 1093
AflIII ACRYGT 2 cut(s) 372, 849
AgsI TTSAA 4 cut(s) 131, 379, 407, 593
AjnI CCWGG 1 cut(s) 727
AjuI GAANNNNNNNTTGG 4 cut(s) 255, 287, 585, 617
AleI CACNNNNGTG 1 cut(s) 206
Alw21I GWGCWC 2 cut(s) 213, 494
Alw26I GTCTC 2 cut(s) 77, 162
Alw44I GTGCAC 1 cut(s) 209
AlwI GGATC 1 cut(s) 555
AoxI GGCC 6 cut(s) 497, 725, 781, 804, 1084, 1095
ApaLI GTGCAC 1 cut(s) 209
ApeKI GCWGC 4 cut(s) 314, 353, 653, 656
ApoI RAATTY 1 cut(s) 269
Asp700I GAANNNNTTC 1 cut(s) 307
AspA2I CCTAGG 1 cut(s) 664
AspS9I GGNCC 5 cut(s) 329, 458, 781, 805, 1018
AsuHPI GGTGA 5 cut(s) 23, 193, 227, 677, 853
AvaII GGWCC 3 cut(s) 329, 458, 1018
AvrII CCTAGG 1 cut(s) 664
BaeGI GKGCMC 1 cut(s) 213
BbrPI CACGTG 2 cut(s) 373, 926
Bbv12I GWGCWC 2 cut(s) 213, 494
BbvI GCAGC 4 cut(s) 301, 365, 640, 668
BccI CCATC 4 cut(s) 132, 434, 832, 1052
BceAI ACGGC 1 cut(s) 1110
BcgI CGANNNNNNTGC 2 cut(s) 345, 379
BciT130I CCWGG 1 cut(s) 729
BcoDI GTCTC 2 cut(s) 77, 162
BfaI CTAG 4 cut(s) 260, 495, 665, 875
BfmI CTRYAG 4 cut(s) 173, 573, 654, 954
BfuAI ACCTGC 2 cut(s) 661, 696
BglII AGATCT 1 cut(s) 814
BisI GCNGC 4 cut(s) 315, 354, 654, 657
BlnI CCTAGG 1 cut(s) 664
BlsI GCNGC 4 cut(s) 316, 355, 655, 658
Bme1390I CCNGG 1 cut(s) 729
Bme18I GGWCC 3 cut(s) 329, 458, 1018
BmgT120I GGNCC 5 cut(s) 329, 458, 781, 805, 1018
BmiI GGNNCC 3 cut(s) 459, 782, 1019
BmrFI CCNGG 1 cut(s) 729
BmsI GCATC 3 cut(s) 104, 668, 745
BpmI CTGGAG 1 cut(s) 283
BsaAI YACGTR 2 cut(s) 373, 926
BsaI GGTCTC 2 cut(s) 77, 162
BsaJI CCNNGG 3 cut(s) 192, 664, 801
BsaXI ACNNNNNCTCC 2 cut(s) 597, 627
Bsc4I CCNNNNNNNGG 2 cut(s) 670, 1093
Bse1I ACTGG 1 cut(s) 173
BseBI CCWGG 1 cut(s) 729
BseDI CCNNGG 3 cut(s) 192, 664, 801
BseGI GGATG 4 cut(s) 119, 143, 659, 919
BseLI CCNNNNNNNGG 2 cut(s) 670, 1093
BseNI ACTGG 1 cut(s) 173
BseRI GAGGAG 1 cut(s) 38
BseSI GKGCMC 1 cut(s) 213
BseXI GCAGC 4 cut(s) 301, 365, 640, 668
BseYI CCCAGC 2 cut(s) 597, 959
BsgI GTGCAG 1 cut(s) 674
BshFI GGCC 6 cut(s) 499, 727, 783, 806, 1086, 1097
BsiHKAI GWGCWC 2 cut(s) 213, 494
BslFI GGGAC 2 cut(s) 471, 1031
BslI CCNNNNNNNGG 2 cut(s) 670, 1093
BsmAI GTCTC 2 cut(s) 77, 162
BsmFI GGGAC 2 cut(s) 471, 1031
BsnI GGCC 6 cut(s) 499, 727, 783, 806, 1086, 1097
Bso31I GGTCTC 2 cut(s) 77, 162
Bsp1286I GDGCHC 2 cut(s) 213, 494
Bsp143I GATC 2 cut(s) 547, 814
BspACI CCGC 4 cut(s) 34, 228, 451, 808
BspANI GGCC 6 cut(s) 499, 727, 783, 806, 1086, 1097
BspLI GGNNCC 3 cut(s) 459, 782, 1019
BspMAI CTGCAG 1 cut(s) 658
BspMI ACCTGC 2 cut(s) 661, 696
BspPI GGATC 1 cut(s) 555
BspTNI GGTCTC 2 cut(s) 77, 162
BsrI ACTGG 1 cut(s) 173
BssECI CCNNGG 3 cut(s) 192, 664, 801
BssMI GATC 2 cut(s) 547, 814
BssT1I CCWWGG 2 cut(s) 664, 801
Bst2UI CCWGG 1 cut(s) 729
Bst4CI ACNGT 4 cut(s) 22, 215, 323, 992
BstAPI GCANNNNNTGC 1 cut(s) 887
BstBAI YACGTR 2 cut(s) 373, 926
BstC8I GCNNGC 2 cut(s) 209, 808
BstDSI CCRYGG 1 cut(s) 192
BstENI CCTNNNNNAGG 1 cut(s) 668
BstF5I GGATG 4 cut(s) 119, 143, 659, 919
BstKTI GATC 2 cut(s) 550, 817
BstMAI GTCTC 2 cut(s) 77, 162
BstMBI GATC 2 cut(s) 547, 814
BstMWI GCNNNNNNNGC 3 cut(s) 236, 287, 887
BstNI CCWGG 1 cut(s) 729
BstNSI RCATGY 3 cut(s) 281, 736, 853
BstSCI CCNGG 1 cut(s) 727
BstSFI CTRYAG 4 cut(s) 173, 573, 654, 954
BstSLI GKGCMC 1 cut(s) 213
BstV1I GCAGC 4 cut(s) 301, 365, 640, 668
BstX2I RGATCY 1 cut(s) 814
BstXI CCANNNNNNTGG 2 cut(s) 168, 776
BstYI RGATCY 1 cut(s) 814
BsuRI GGCC 6 cut(s) 499, 727, 783, 806, 1086, 1097
BtgI CCRYGG 1 cut(s) 192
BtsCI GGATG 4 cut(s) 119, 143, 659, 919
BtsI GCAGTG 2 cut(s) 834, 1041
BtsIMutI CAGTG 3 cut(s) 18, 834, 1041
BveI ACCTGC 2 cut(s) 661, 696
Cac8I GCNNGC 2 cut(s) 209, 808
Cfr13I GGNCC 5 cut(s) 329, 458, 781, 805, 1018
CseI GACGC 1 cut(s) 17
Csp6I GTAC 1 cut(s) 719
CviAII CATG 5 cut(s) 38, 68, 278, 733, 850
CviQI GTAC 1 cut(s) 719
DpnI GATC 2 cut(s) 549, 816
DpnII GATC 2 cut(s) 547, 814
EciI GGCGGA 1 cut(s) 217
Eco130I CCWWGG 2 cut(s) 664, 801
Eco147I AGGCCT 1 cut(s) 727
Eco31I GGTCTC 2 cut(s) 77, 162
Eco47I GGWCC 3 cut(s) 329, 458, 1018
Eco72I CACGTG 2 cut(s) 373, 926
EcoNI CCTNNNNNAGG 1 cut(s) 668
EcoO109I RGGNCCY 2 cut(s) 458, 1018
EcoRII CCWGG 1 cut(s) 727
EcoT14I CCWWGG 2 cut(s) 664, 801
EcoT22I ATGCAT 1 cut(s) 104
ErhI CCWWGG 2 cut(s) 664, 801
FaeI CATG 5 cut(s) 41, 71, 281, 736, 853
FalI AAGNNNNNCTT 2 cut(s) 1082, 1114
FaqI GGGAC 2 cut(s) 471, 1031
FatI CATG 5 cut(s) 37, 67, 277, 732, 849
FauI CCCGC 1 cut(s) 815
FauNDI CATATG 1 cut(s) 771
FblI GTMKAC 1 cut(s) 973
Fnu4HI GCNGC 4 cut(s) 315, 354, 654, 657
FokI GGATG 4 cut(s) 126, 150, 646, 906
Fsp4HI GCNGC 4 cut(s) 315, 354, 654, 657
FspBI CTAG 4 cut(s) 260, 495, 665, 875
GluI GCNGC 4 cut(s) 315, 354, 654, 657
GsaI CCCAGC 2 cut(s) 601, 963
GsuI CTGGAG 1 cut(s) 283
HaeIII GGCC 6 cut(s) 499, 727, 783, 806, 1086, 1097
HgaI GACGC 1 cut(s) 17
Hin1II CATG 5 cut(s) 41, 71, 281, 736, 853
HindIII AAGCTT 2 cut(s) 473, 1067
HinfI GANTC 3 cut(s) 220, 254, 593
HphI GGTGA 5 cut(s) 23, 193, 227, 677, 853
Hpy166II GTNNAC 2 cut(s) 211, 974
Hpy188I TCNGA 2 cut(s) 619, 1104
Hpy188III TCNNGA 4 cut(s) 300, 407, 437, 875
Hpy8I GTNNAC 2 cut(s) 211, 974
HpyAV CCTTC 1 cut(s) 244
HpyCH4III ACNGT 4 cut(s) 22, 215, 323, 992
HpyCH4IV ACGT 4 cut(s) 372, 421, 895, 925
HpyCH4V TGCA 5 cut(s) 102, 211, 239, 656, 691
HpyF10VI GCNNNNNNNGC 3 cut(s) 236, 287, 887
HpySE526I ACGT 4 cut(s) 372, 421, 895, 925
Hsp92II CATG 5 cut(s) 41, 71, 281, 736, 853
Kzo9I GATC 2 cut(s) 547, 814
LmnI GCTCC 3 cut(s) 287, 302, 700
Lsp1109I GCAGC 4 cut(s) 301, 365, 640, 668
LweI GCATC 3 cut(s) 104, 668, 745
MaeI CTAG 4 cut(s) 260, 495, 665, 875
MaeII ACGT 4 cut(s) 372, 421, 895, 925
MaeIII GTNAC 4 cut(s) 29, 255, 540, 735
MalI GATC 2 cut(s) 549, 816
MboI GATC 2 cut(s) 547, 814
MflI RGATCY 1 cut(s) 814
MhlI GDGCHC 2 cut(s) 213, 494
MluCI AATT 7 cut(s) 132, 269, 357, 395, 785, 861, 1080
MlyI GAGTC 2 cut(s) 229, 263
MmeI TCCRAC 1 cut(s) 590
MnlI CCTC 5 cut(s) 59, 240, 837, 871, 976
Mph1103I ATGCAT 1 cut(s) 104
MroXI GAANNNNTTC 1 cut(s) 307
MseI TTAA 4 cut(s) 537, 582, 714, 788
MslI CAYNNNNRTG 3 cut(s) 36, 206, 924
MspA1I CMGCKG 1 cut(s) 959
MspR9I CCNGG 1 cut(s) 729
MvaI CCWGG 1 cut(s) 729
MwoI GCNNNNNNNGC 3 cut(s) 236, 287, 887
NdeI CATATG 1 cut(s) 771
NdeII GATC 2 cut(s) 547, 814
NlaIII CATG 5 cut(s) 41, 71, 281, 736, 853
NlaIV GGNNCC 3 cut(s) 459, 782, 1019
NmuCI GTSAC 3 cut(s) 29, 255, 735
NsiI ATGCAT 1 cut(s) 104
NspI RCATGY 3 cut(s) 281, 736, 853
OliI CACNNNNGTG 1 cut(s) 206
PaqCI CACCTGC 1 cut(s) 696
PceI AGGCCT 1 cut(s) 727
PciI ACATGT 1 cut(s) 849
PdmI GAANNNNTTC 1 cut(s) 307
PfeI GAWTC 1 cut(s) 593
PkrI GCNGC 4 cut(s) 316, 355, 655, 658
PleI GAGTC 2 cut(s) 228, 262
PmaCI CACGTG 2 cut(s) 373, 926
PmlI CACGTG 2 cut(s) 373, 926
PpsI GAGTC 2 cut(s) 228, 262
Ppu21I YACGTR 2 cut(s) 373, 926
PpuMI RGGWCCY 2 cut(s) 458, 1018
PscI ACATGT 1 cut(s) 849
Psp1406I AACGTT 1 cut(s) 895
Psp5II RGGWCCY 2 cut(s) 458, 1018
Psp6I CCWGG 1 cut(s) 727
PspCI CACGTG 2 cut(s) 373, 926
PspFI CCCAGC 2 cut(s) 597, 959
PspGI CCWGG 1 cut(s) 727
PspN4I GGNNCC 3 cut(s) 459, 782, 1019
PspPI GGNCC 5 cut(s) 329, 458, 781, 805, 1018
PspPPI RGGWCCY 2 cut(s) 458, 1018
PstI CTGCAG 1 cut(s) 658
PsuI RGATCY 1 cut(s) 814
PvuII CAGCTG 1 cut(s) 959
RsaI GTAC 1 cut(s) 720
RsaNI GTAC 1 cut(s) 719
RseI CAYNNNNRTG 3 cut(s) 36, 206, 924
SaqAI TTAA 4 cut(s) 537, 582, 714, 788
SatI GCNGC 4 cut(s) 315, 354, 654, 657
Sau3AI GATC 2 cut(s) 547, 814
Sau96I GGNCC 5 cut(s) 329, 458, 781, 805, 1018
SchI GAGTC 2 cut(s) 229, 263
ScrFI CCNGG 1 cut(s) 729
SduI GDGCHC 2 cut(s) 213, 494
SfaNI GCATC 3 cut(s) 104, 668, 745
SfcI CTRYAG 4 cut(s) 173, 573, 654, 954
SinI GGWCC 3 cut(s) 329, 458, 1018
SmiMI CAYNNNNRTG 3 cut(s) 36, 206, 924
Sse9I AATT 7 cut(s) 132, 269, 357, 395, 785, 861, 1080
SseBI AGGCCT 1 cut(s) 727
SsiI CCGC 4 cut(s) 34, 228, 451, 808
SspMI CTAG 4 cut(s) 260, 495, 665, 875
StuI AGGCCT 1 cut(s) 727
StyD4I CCNGG 1 cut(s) 727
StyI CCWWGG 2 cut(s) 664, 801
TaaI ACNGT 4 cut(s) 22, 215, 323, 992
TaiI ACGT 4 cut(s) 375, 424, 898, 928
TasI AATT 7 cut(s) 132, 269, 357, 395, 785, 861, 1080
TatI WGTACW 1 cut(s) 718
TfiI GAWTC 1 cut(s) 593
Tru1I TTAA 4 cut(s) 537, 582, 714, 788
Tru9I TTAA 4 cut(s) 537, 582, 714, 788
TscAI CASTG 3 cut(s) 25, 834, 1041
TseFI GTSAC 3 cut(s) 29, 255, 735
TseI GCWGC 4 cut(s) 314, 353, 653, 656
Tsp45I GTSAC 3 cut(s) 29, 255, 735
TspDTI ATGAA 4 cut(s) 84, 732, 873, 1092
TspGWI ACGGA 1 cut(s) 213
TspRI CASTG 3 cut(s) 25, 834, 1041
VneI GTGCAC 1 cut(s) 209
VpaK11BI GGWCC 3 cut(s) 329, 458, 1018
XagI CCTNNNNNAGG 1 cut(s) 668
XapI RAATTY 1 cut(s) 269
XbaI TCTAGA 1 cut(s) 874
XceI RCATGY 3 cut(s) 281, 736, 853
XcmI CCANNNNNNNNNTGG 1 cut(s) 1011
XmaJI CCTAGG 1 cut(s) 664
XmiI GTMKAC 1 cut(s) 973
XmnI GAANNNNTTC 1 cut(s) 307
XspI CTAG 4 cut(s) 260, 495, 665, 875
Zsp2I ATGCAT 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.