Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007757.1

Orthogroup ID

OG0005354

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2967

Gene Structure 2967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007757.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

gatgactcgggaaaaagaacttccaagactagtcatactccactatctagtggcaaaagtgacattgattttgcaaagactcgttcaaacctttccaaggtagaaaaggttcgtgaaagggttccagtcctggagaaaacttccatgctgcgaactctgaaagatcatctccaccagtgccctagcaagttagctgaggaaatggtcaggtgtatgtctctagtttattgttggctttgcagtgcagcctctgagaagattgagaaaaaccaatcgcctttgctgtcaaggtcatccactaatgttttacagcctccacatggtactgaagatgcccaagattggtcaggcaaatcaatggtagaaatatcttggatatcaaccgataagagaaagtctgctcacgcttcttatgccattaataactatagaatattggtcgagcaactggagaaggtggatgtcactcagatggaattggatggccaaattgcattttggatcaacgtttacaatgcactgcttatgcatgcatacttagcatatggaattcccaacagctctttaagaaggttggccttgttccataaggctgcttacaacattgggggccttgtcatcagcgcaaatgccatagagcaatccatatttggcttccagacacccaggattggacggtggcttgaaacattcctttcaactgccttgaggaagaagtttggggaagacagacagcttcgcaattcaaaattgggtctcccagcttccgaaccccttgtttgctttgctctttgtaccggagctttttctgatccagcgttgaaagtctacacagcctcaaatgttagagatgagcttgaagaagcaaagaaagatttcatcaaagcaaatgtagtggtaaagaagccgaggaaagtttttctaccaaagatgcttgaaagattttcgagggaagcgtcttttagctctgatgatcttctcaaatgggtcactgacaatgttgatgagaagcttcaggattcaattagaaaatgcattgatcataaatccagcaagaaggcatctcaaatcatagagtggttgccttacaattcaaggttccgatacgtgttcccaaaggatctggcagagaagccatggtggttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF547 Lzipper-MIP1

Protein Analysis

382

Amino Acids

43.54

Weight (kDa)

9.29

Isoelectric Point (pI)

46.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47380 AT5G47380 AT5G47380 AT5G47380 AT5G47380
fragaria_vesca	FvH4_5g19100 FvH4_5g19100 FvH4_5g19100 FvH4_5g19100 FvH4_5g19100
malus_domestica	MD06G1057000.v1.1
prunus_persica	Prupe.5G067800_v2.0.a1 Prupe.5G067800_v2.0.a1
pyrus_communis	pycom06g04760
rosa_chinensis	RchiOBHm_Chr7g0203571
rosa_laevigata	RLG00000003517
rosa_multiflora	Rmu_sc0007757.1_g000001 Rmu_sc0017396.1_g000001
rosa_roxburghii	Rroxscaffold_3G00253670 Rroxscaffold_3G00253710
rosa_rugosa	Rorug07G0077000 Rorug07G0077100 Rorug07G0077100 Rorug07G0077200
rosa_samantha	Rh7AG206800 Rh7BG206300 Rh7CG219400 Rh7DG214000
rosa_wichuraiana	Rw7G018040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	828
AclI	AACGTT	1 cut(s)	507
AclWI	GGATC	3 cut(s)	509, 806, 1128
AcoI	YGGCCR	1 cut(s)	484
AcsI	RAATTY	1 cut(s)	549
AcuI	CTGAAG	2 cut(s)	348, 998
AfaI	GTAC	2 cut(s)	325, 796
AfiI	CCNNNNNNNGG	4 cut(s)	97, 320, 342, 671
AflIII	ACRYGT	1 cut(s)	1107
AgsI	TTSAA	9 cut(s)	87, 686, 699, 747, 823, 860, 938, 1023, 1095
AhlI	ACTAGT	1 cut(s)	29
AjnI	CCWGG	2 cut(s)	129, 665
AluBI	AGCT	8 cut(s)	194, 561, 736, 764, 803, 856, 966, 1012
AluI	AGCT	8 cut(s)	194, 561, 736, 764, 803, 856, 966, 1012
Alw26I	GTCTC	2 cut(s)	222, 761
AlwI	GGATC	3 cut(s)	509, 806, 1128
AlwNI	CAGNNNCTG	1 cut(s)	251
Ama87I	CYCGRG	1 cut(s)	7
AoxI	GGCC	3 cut(s)	484, 576, 610
ApeKI	GCWGC	3 cut(s)	148, 245, 593
ApoI	RAATTY	1 cut(s)	549
ArsI	GACNNNNNNTTYG	2 cut(s)	53, 85
AseI	ATTAAT	1 cut(s)	420
Asp700I	GAANNNNTTC	3 cut(s)	108, 120, 875
AspLEI	GCGC	1 cut(s)	626
AspS9I	GGNCC	1 cut(s)	610
AvaI	CYCGRG	1 cut(s)	7
BaeGI	GKGCMC	1 cut(s)	182
BalI	TGGCCA	1 cut(s)	486
BbsI	GAAGAC	1 cut(s)	732
BbvCI	CCTCAGC	1 cut(s)	195
BbvI	GCAGC	3 cut(s)	135, 257, 580
BccI	CCATC	2 cut(s)	466, 476
BciT130I	CCWGG	2 cut(s)	131, 667
BclI	TGATCA	1 cut(s)	1039
BcoDI	GTCTC	2 cut(s)	222, 761
BcuI	ACTAGT	1 cut(s)	29
BfaI	CTAG	4 cut(s)	30, 48, 183, 221
BfmI	CTRYAG	1 cut(s)	427
BisI	GCNGC	3 cut(s)	149, 246, 594
BlsI	GCNGC	3 cut(s)	150, 247, 595
Bme1390I	CCNGG	2 cut(s)	131, 667
BmeT110I	CYCGRG	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	610
BmiI	GGNNCC	3 cut(s)	123, 611, 1100
BmrFI	CCNGG	2 cut(s)	131, 667
BmsI	GCATC	3 cut(s)	322, 921, 1070
BpiI	GAAGAC	1 cut(s)	732
BpmI	CTGGAG	2 cut(s)	152, 470
Bpu10I	CCTNAGC	1 cut(s)	195
BpuEI	CTTGAG	1 cut(s)	727
BsaAI	YACGTR	1 cut(s)	1108
BsaI	GGTCTC	1 cut(s)	761
BsaJI	CCNNGG	4 cut(s)	96, 665, 908, 1136
BsaWI	WCCGGW	1 cut(s)	797
Bsc4I	CCNNNNNNNGG	4 cut(s)	97, 320, 342, 671
Bse1I	ACTGG	3 cut(s)	125, 175, 453
BseBI	CCWGG	2 cut(s)	131, 667
BseDI	CCNNGG	4 cut(s)	96, 665, 908, 1136
BseGI	GGATG	3 cut(s)	293, 466, 487
BseLI	CCNNNNNNNGG	4 cut(s)	97, 320, 342, 671
BseMII	CTCAG	3 cut(s)	186, 243, 482
BseNI	ACTGG	3 cut(s)	125, 175, 453
BseSI	GKGCMC	1 cut(s)	182
BseXI	GCAGC	3 cut(s)	135, 257, 580
BseYI	CCCAGC	1 cut(s)	760
BsgI	GTGCAG	1 cut(s)	264
BshFI	GGCC	3 cut(s)	486, 578, 612
BsiHKCI	CYCGRG	1 cut(s)	7
BsiSI	CCGG	1 cut(s)	798
BslI	CCNNNNNNNGG	4 cut(s)	97, 320, 342, 671
BsmAI	GTCTC	2 cut(s)	222, 761
BsnI	GGCC	3 cut(s)	486, 578, 612
Bso31I	GGTCTC	1 cut(s)	761
BsoBI	CYCGRG	1 cut(s)	7
Bsp1286I	GDGCHC	1 cut(s)	182
Bsp143I	GATC	6 cut(s)	163, 501, 811, 973, 1039, 1120
Bsp19I	CCATGG	1 cut(s)	1136
BspANI	GGCC	3 cut(s)	486, 578, 612
BspCNI	CTCAG	3 cut(s)	187, 244, 481
BspLI	GGNNCC	3 cut(s)	123, 611, 1100
BspPI	GGATC	3 cut(s)	509, 806, 1128
BspTNI	GGTCTC	1 cut(s)	761
BsrI	ACTGG	3 cut(s)	125, 175, 453
BssECI	CCNNGG	4 cut(s)	96, 665, 908, 1136
BssMI	GATC	6 cut(s)	163, 501, 811, 973, 1039, 1120
BssT1I	CCWWGG	2 cut(s)	96, 1136
Bst2UI	CCWGG	2 cut(s)	131, 667
Bst4CI	ACNGT	1 cut(s)	678
BstBAI	YACGTR	1 cut(s)	1108
BstC8I	GCNNGC	1 cut(s)	531
BstDEI	CTNAG	4 cut(s)	195, 252, 468, 538
BstDSI	CCRYGG	1 cut(s)	1136
BstENI	CCTNNNNNAGG	1 cut(s)	95
BstF5I	GGATG	3 cut(s)	293, 466, 487
BstHHI	GCGC	1 cut(s)	626
BstKTI	GATC	6 cut(s)	166, 504, 814, 976, 1042, 1123
BstMAI	GTCTC	2 cut(s)	222, 761
BstMBI	GATC	6 cut(s)	163, 501, 811, 973, 1039, 1120
BstMWI	GCNNNNNNNGC	2 cut(s)	413, 539
BstNI	CCWGG	2 cut(s)	131, 667
BstNSI	RCATGY	1 cut(s)	533
BstSCI	CCNGG	2 cut(s)	129, 665
BstSFI	CTRYAG	1 cut(s)	427
BstSLI	GKGCMC	1 cut(s)	182
BstV1I	GCAGC	3 cut(s)	135, 257, 580
BstV2I	GAAGAC	1 cut(s)	732
BstX2I	RGATCY	1 cut(s)	1120
BstYI	RGATCY	1 cut(s)	1120
BsuRI	GGCC	3 cut(s)	486, 578, 612
BtgI	CCRYGG	1 cut(s)	1136
BtsCI	GGATG	3 cut(s)	293, 466, 487
BtsI	GCAGTG	2 cut(s)	247, 518
BtsIMutI	CAGTG	4 cut(s)	182, 247, 518, 990
Cac8I	GCNNGC	1 cut(s)	531
CaiI	CAGNNNCTG	1 cut(s)	251
CfoI	GCGC	1 cut(s)	626
Cfr13I	GGNCC	1 cut(s)	610
CseI	GACGC	1 cut(s)	945
Csp6I	GTAC	2 cut(s)	324, 795
CspCI	CAANNNNNGTGG	2 cut(s)	876, 911
CviAII	CATG	4 cut(s)	145, 320, 530, 1137
CviQI	GTAC	2 cut(s)	324, 795
DdeI	CTNAG	4 cut(s)	195, 252, 468, 538
DpnI	GATC	6 cut(s)	165, 503, 813, 975, 1041, 1122
DpnII	GATC	6 cut(s)	163, 501, 811, 973, 1039, 1120
EaeI	YGGCCR	1 cut(s)	484
Eco130I	CCWWGG	2 cut(s)	96, 1136
Eco31I	GGTCTC	1 cut(s)	761
Eco32I	GATATC	1 cut(s)	378
Eco57I	CTGAAG	2 cut(s)	348, 998
Eco88I	CYCGRG	1 cut(s)	7
EcoNI	CCTNNNNNAGG	1 cut(s)	95
EcoO109I	RGGNCCY	1 cut(s)	610
EcoRI	GAATTC	1 cut(s)	549
EcoRII	CCWGG	2 cut(s)	129, 665
EcoRV	GATATC	1 cut(s)	378
EcoT14I	CCWWGG	2 cut(s)	96, 1136
EcoT22I	ATGCAT	3 cut(s)	531, 535, 1037
ErhI	CCWWGG	2 cut(s)	96, 1136
FaeI	CATG	4 cut(s)	148, 323, 533, 1140
FatI	CATG	4 cut(s)	144, 319, 529, 1136
FauNDI	CATATG	1 cut(s)	544
FbaI	TGATCA	1 cut(s)	1039
FblI	GTMKAC	1 cut(s)	828
Fnu4HI	GCNGC	3 cut(s)	149, 246, 594
FokI	GGATG	3 cut(s)	280, 473, 494
Fsp4HI	GCNGC	3 cut(s)	149, 246, 594
FspBI	CTAG	4 cut(s)	30, 48, 183, 221
GlaI	GCGC	1 cut(s)	625
GluI	GCNGC	3 cut(s)	149, 246, 594
GsaI	CCCAGC	1 cut(s)	764
GsuI	CTGGAG	2 cut(s)	152, 470
HaeIII	GGCC	3 cut(s)	486, 578, 612
HapII	CCGG	1 cut(s)	798
HgaI	GACGC	1 cut(s)	945
HhaI	GCGC	1 cut(s)	626
Hin1II	CATG	4 cut(s)	148, 323, 533, 1140
Hin6I	GCGC	1 cut(s)	624
HinP1I	GCGC	1 cut(s)	624
HindIII	AAGCTT	1 cut(s)	1010
HinfI	GANTC	3 cut(s)	5, 79, 1019
HpaII	CCGG	1 cut(s)	798
Hpy166II	GTNNAC	2 cut(s)	511, 829
Hpy188I	TCNGA	7 cut(s)	159, 253, 471, 769, 811, 970, 1103
Hpy188III	TCNNGA	4 cut(s)	9, 113, 658, 1016
Hpy8I	GTNNAC	2 cut(s)	511, 829
HpyAV	CCTTC	3 cut(s)	448, 564, 1051
HpyCH4III	ACNGT	1 cut(s)	678
HpyCH4IV	ACGT	2 cut(s)	507, 1107
HpyCH4V	TGCA	8 cut(s)	74, 240, 245, 494, 518, 529, 533, 1035
HpyF10VI	GCNNNNNNNGC	2 cut(s)	413, 539
HpyF3I	CTNAG	4 cut(s)	195, 252, 468, 538
HpySE526I	ACGT	2 cut(s)	507, 1107
Hsp92II	CATG	4 cut(s)	148, 323, 533, 1140
HspAI	GCGC	1 cut(s)	624
Ksp22I	TGATCA	1 cut(s)	1039
Kzo9I	GATC	6 cut(s)	163, 501, 811, 973, 1039, 1120
LmnI	GCTCC	1 cut(s)	800
Lsp1109I	GCAGC	3 cut(s)	135, 257, 580
LweI	GCATC	3 cut(s)	322, 921, 1070
MaeI	CTAG	4 cut(s)	30, 48, 183, 221
MaeII	ACGT	2 cut(s)	507, 1107
MaeIII	GTNAC	3 cut(s)	59, 463, 988
MalI	GATC	6 cut(s)	165, 503, 813, 975, 1041, 1122
MboI	GATC	6 cut(s)	163, 501, 811, 973, 1039, 1120
MboII	GAAGA	6 cut(s)	268, 341, 724, 737, 872, 968
MflI	RGATCY	1 cut(s)	1120
MhlI	GDGCHC	1 cut(s)	182
MlsI	TGGCCA	1 cut(s)	486
MluCI	AATT	7 cut(s)	476, 489, 549, 742, 749, 1023, 1090
MluNI	TGGCCA	1 cut(s)	486
MlyI	GAGTC	1 cut(s)	73
MnlI	CCTC	7 cut(s)	190, 259, 324, 702, 847, 903, 942
Mox20I	TGGCCA	1 cut(s)	486
Mph1103I	ATGCAT	3 cut(s)	531, 535, 1037
MroXI	GAANNNNTTC	3 cut(s)	108, 120, 875
MscI	TGGCCA	1 cut(s)	486
MseI	TTAA	2 cut(s)	420, 566
MslI	CAYNNNNRTG	1 cut(s)	470
Msp20I	TGGCCA	1 cut(s)	486
MspI	CCGG	1 cut(s)	798
MspR9I	CCNGG	2 cut(s)	131, 667
MvaI	CCWGG	2 cut(s)	131, 667
MwoI	GCNNNNNNNGC	2 cut(s)	413, 539
NcoI	CCATGG	1 cut(s)	1136
NdeI	CATATG	1 cut(s)	544
NdeII	GATC	6 cut(s)	163, 501, 811, 973, 1039, 1120
NlaIII	CATG	4 cut(s)	148, 323, 533, 1140
NlaIV	GGNNCC	3 cut(s)	123, 611, 1100
NmeAIII	GCCGAG	1 cut(s)	933
NmuCI	GTSAC	3 cut(s)	59, 463, 988
NsiI	ATGCAT	3 cut(s)	531, 535, 1037
NspI	RCATGY	1 cut(s)	533
PaeI	GCATGC	1 cut(s)	533
PcsI	WCGNNNNNNNCGW	1 cut(s)	953
PdmI	GAANNNNTTC	3 cut(s)	108, 120, 875
PfeI	GAWTC	1 cut(s)	1019
PfoI	TCCNGGA	1 cut(s)	129
PkrI	GCNGC	3 cut(s)	150, 247, 595
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
Ppu21I	YACGTR	1 cut(s)	1108
PshBI	ATTAAT	1 cut(s)	420
Psp1406I	AACGTT	1 cut(s)	507
Psp6I	CCWGG	2 cut(s)	129, 665
PspFI	CCCAGC	1 cut(s)	760
PspGI	CCWGG	2 cut(s)	129, 665
PspN4I	GGNNCC	3 cut(s)	123, 611, 1100
PspPI	GGNCC	1 cut(s)	610
PsrI	GAACNNNNNNTAC	2 cut(s)	93, 125
PstNI	CAGNNNCTG	1 cut(s)	251
PsuI	RGATCY	1 cut(s)	1120
RsaI	GTAC	2 cut(s)	325, 796
RsaNI	GTAC	2 cut(s)	324, 795
RseI	CAYNNNNRTG	1 cut(s)	470
SaqAI	TTAA	2 cut(s)	420, 566
SatI	GCNGC	3 cut(s)	149, 246, 594
Sau3AI	GATC	6 cut(s)	163, 501, 811, 973, 1039, 1120
Sau96I	GGNCC	1 cut(s)	610
SchI	GAGTC	1 cut(s)	73
ScrFI	CCNGG	2 cut(s)	131, 667
SduI	GDGCHC	1 cut(s)	182
SfaNI	GCATC	3 cut(s)	322, 921, 1070
SfcI	CTRYAG	1 cut(s)	427
SmiMI	CAYNNNNRTG	1 cut(s)	470
SmlI	CTYRAG	1 cut(s)	706
SmoI	CTYRAG	1 cut(s)	706
SpeI	ACTAGT	1 cut(s)	29
SphI	GCATGC	1 cut(s)	533
Sse9I	AATT	7 cut(s)	476, 489, 549, 742, 749, 1023, 1090
SspI	AATATT	1 cut(s)	435
SspMI	CTAG	4 cut(s)	30, 48, 183, 221
StyD4I	CCNGG	2 cut(s)	129, 665
StyI	CCWWGG	2 cut(s)	96, 1136
TaaI	ACNGT	1 cut(s)	678
TaiI	ACGT	2 cut(s)	510, 1110
TaqI	TCGA	2 cut(s)	441, 947
TasI	AATT	7 cut(s)	476, 489, 549, 742, 749, 1023, 1090
TfiI	GAWTC	1 cut(s)	1019
Tru1I	TTAA	2 cut(s)	420, 566
Tru9I	TTAA	2 cut(s)	420, 566
TscAI	CASTG	4 cut(s)	182, 247, 525, 997
TseFI	GTSAC	3 cut(s)	59, 463, 988
TseI	GCWGC	3 cut(s)	148, 245, 593
Tsp45I	GTSAC	3 cut(s)	59, 463, 988
TspDTI	ATGAA	1 cut(s)	868
TspRI	CASTG	4 cut(s)	182, 247, 525, 997
VspI	ATTAAT	1 cut(s)	420
XagI	CCTNNNNNAGG	1 cut(s)	95
XapI	RAATTY	1 cut(s)	549
XceI	RCATGY	1 cut(s)	533
XmiI	GTMKAC	1 cut(s)	828
XmnI	GAANNNNTTC	3 cut(s)	108, 120, 875
XspI	CTAG	4 cut(s)	30, 48, 183, 221
Zsp2I	ATGCAT	3 cut(s)	531, 535, 1037

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.