Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017396.1

Orthogroup ID

OG0005354

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2736

Gene Structure 2736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017396.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 473 bp

ttggagagaaagatgggtgtcaagaacaagcaggagggaaaagagagaatggagattctgggccacgctcagatgttcatacccaacacaggcgctccaaaagtgcttctgacaagaattttggtattcaaagaggtcgaggtttaagttccacaaagaaggacaagaatgaaacacaggtttcatcaccttcaacaagtgcgtctacgggacaaagtccttggcatgaaaatcctatttattttaacaagaatatgtcattgaacaacagagcatccttggaaaaagatatcgaacagctgcagttgcgtttgcaggaagagaaatctatgcgtaacatgcttgagagggcaatgggccgagcttcaagtactctatcacctggacatagacatttctctgtccaggtaattactagtcttcattactttagttggaagaactgtaccagaatttgtttgttagtgctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF547 Lzipper-MIP1

Protein Analysis

156

Amino Acids

17.55

Weight (kDa)

9.71

Isoelectric Point (pI)

57.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47380 AT5G47380 AT5G47380 AT5G47380 AT5G47380
fragaria_vesca	FvH4_5g19100 FvH4_5g19100 FvH4_5g19100 FvH4_5g19100 FvH4_5g19100
malus_domestica	MD06G1057000.v1.1
prunus_persica	Prupe.5G067800_v2.0.a1 Prupe.5G067800_v2.0.a1
pyrus_communis	pycom06g04760
rosa_chinensis	RchiOBHm_Chr7g0203571
rosa_laevigata	RLG00000003517
rosa_multiflora	Rmu_sc0007757.1_g000001 Rmu_sc0017396.1_g000001
rosa_roxburghii	Rroxscaffold_3G00253670 Rroxscaffold_3G00253710
rosa_rugosa	Rorug07G0077000 Rorug07G0077100 Rorug07G0077100 Rorug07G0077200
rosa_samantha	Rh7AG206800 Rh7BG206300 Rh7CG219400 Rh7DG214000
rosa_wichuraiana	Rw7G018040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	205
AcsI	RAATTY	2 cut(s)	117, 452
AfaI	GTAC	2 cut(s)	372, 447
AfiI	CCNNNNNNNGG	1 cut(s)	89
AgsI	TTSAA	4 cut(s)	130, 194, 264, 368
AhlI	ACTAGT	1 cut(s)	415
AjnI	CCWGG	2 cut(s)	381, 404
AluBI	AGCT	2 cut(s)	300, 364
AluI	AGCT	2 cut(s)	300, 364
AoxI	GGCC	2 cut(s)	61, 357
ApeKI	GCWGC	1 cut(s)	300
ApoI	RAATTY	2 cut(s)	117, 452
ArsI	GACNNNNNNTTYG	2 cut(s)	103, 135
AspLEI	GCGC	1 cut(s)	95
AspS9I	GGNCC	2 cut(s)	61, 357
AsuHPI	GGTGA	2 cut(s)	179, 371
BbsI	GAAGAC	1 cut(s)	412
BbvI	GCAGC	1 cut(s)	287
BccI	CCATC	1 cut(s)	7
BciT130I	CCWGG	2 cut(s)	383, 406
BcuI	ACTAGT	1 cut(s)	415
BfaI	CTAG	1 cut(s)	416
BfmI	CTRYAG	1 cut(s)	301
BfoI	RGCGCY	1 cut(s)	96
BisI	GCNGC	1 cut(s)	301
BlsI	GCNGC	1 cut(s)	302
BmcAI	AGTACT	1 cut(s)	372
Bme1390I	CCNGG	2 cut(s)	383, 406
BmgT120I	GGNCC	2 cut(s)	61, 357
BmrFI	CCNGG	2 cut(s)	383, 406
BmsI	GCATC	1 cut(s)	283
BpiI	GAAGAC	1 cut(s)	412
BpuEI	CTTGAG	1 cut(s)	364
BsaJI	CCNNGG	2 cut(s)	220, 278
BsaXI	ACNNNNNCTCC	2 cut(s)	79, 109
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
Bse3DI	GCAATG	1 cut(s)	359
BseBI	CCWGG	2 cut(s)	383, 406
BseDI	CCNNGG	2 cut(s)	220, 278
BseGI	GGATG	1 cut(s)	274
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseMI	GCAATG	1 cut(s)	359
BseMII	CTCAG	1 cut(s)	83
BseXI	GCAGC	1 cut(s)	287
BshFI	GGCC	2 cut(s)	63, 359
BslFI	GGGAC	1 cut(s)	224
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmFI	GGGAC	1 cut(s)	224
BsnI	GGCC	2 cut(s)	63, 359
BspANI	GGCC	2 cut(s)	63, 359
BspCNI	CTCAG	1 cut(s)	82
BspMAI	CTGCAG	1 cut(s)	305
BsrDI	GCAATG	1 cut(s)	359
BssECI	CCNNGG	2 cut(s)	220, 278
BssT1I	CCWWGG	2 cut(s)	220, 278
Bst2UI	CCWGG	2 cut(s)	383, 406
Bst4CI	ACNGT	1 cut(s)	445
Bst6I	CTCTTC	1 cut(s)	314
BstDEI	CTNAG	1 cut(s)	69
BstF5I	GGATG	1 cut(s)	274
BstH2I	RGCGCY	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	95
BstMWI	GCNNNNNNNGC	2 cut(s)	306, 339
BstNI	CCWGG	2 cut(s)	383, 406
BstNSI	RCATGY	1 cut(s)	342
BstSCI	CCNGG	2 cut(s)	381, 404
BstSFI	CTRYAG	1 cut(s)	301
BstV1I	GCAGC	1 cut(s)	287
BstV2I	GAAGAC	1 cut(s)	412
BsuRI	GGCC	2 cut(s)	63, 359
BtsCI	GGATG	1 cut(s)	274
CfoI	GCGC	1 cut(s)	95
Cfr13I	GGNCC	2 cut(s)	61, 357
CseI	GACGC	1 cut(s)	191
Csp6I	GTAC	2 cut(s)	371, 446
CviAII	CATG	2 cut(s)	226, 339
CviJI	RGCY	4 cut(s)	63, 300, 359, 364
CviKI_1	RGCY	4 cut(s)	63, 300, 359, 364
CviQI	GTAC	2 cut(s)	371, 446
DdeI	CTNAG	1 cut(s)	69
Eam1104I	CTCTTC	1 cut(s)	314
EarI	CTCTTC	1 cut(s)	314
Eco130I	CCWWGG	2 cut(s)	220, 278
Eco32I	GATATC	1 cut(s)	291
EcoRII	CCWGG	2 cut(s)	381, 404
EcoRV	GATATC	1 cut(s)	291
EcoT14I	CCWWGG	2 cut(s)	220, 278
ErhI	CCWWGG	2 cut(s)	220, 278
FaeI	CATG	2 cut(s)	229, 342
FaiI	YATR	6 cut(s)	80, 227, 256, 331, 340, 389
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	2 cut(s)	225, 338
FblI	GTMKAC	1 cut(s)	205
Fnu4HI	GCNGC	1 cut(s)	301
FokI	GGATG	1 cut(s)	261
Fsp4HI	GCNGC	1 cut(s)	301
FspBI	CTAG	1 cut(s)	416
GlaI	GCGC	1 cut(s)	94
GluI	GCNGC	1 cut(s)	301
HaeII	RGCGCY	1 cut(s)	96
HaeIII	GGCC	2 cut(s)	63, 359
HgaI	GACGC	1 cut(s)	191
HhaI	GCGC	1 cut(s)	95
Hin1II	CATG	2 cut(s)	229, 342
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
HinfI	GANTC	1 cut(s)	55
HphI	GGTGA	2 cut(s)	179, 371
Hpy166II	GTNNAC	1 cut(s)	206
Hpy188I	TCNGA	2 cut(s)	72, 111
Hpy188III	TCNNGA	1 cut(s)	22
Hpy8I	GTNNAC	1 cut(s)	206
HpyAV	CCTTC	2 cut(s)	153, 200
HpyCH4III	ACNGT	1 cut(s)	445
HpyCH4V	TGCA	2 cut(s)	303, 315
HpyF10VI	GCNNNNNNNGC	2 cut(s)	306, 339
HpyF3I	CTNAG	1 cut(s)	69
Hsp92II	CATG	2 cut(s)	229, 342
HspAI	GCGC	1 cut(s)	93
LmnI	GCTCC	1 cut(s)	100
Lsp1109I	GCAGC	1 cut(s)	287
LweI	GCATC	1 cut(s)	283
MaeI	CTAG	1 cut(s)	416
MaeIII	GTNAC	1 cut(s)	334
MboII	GAAGA	3 cut(s)	331, 412, 450
MluCI	AATT	3 cut(s)	117, 410, 452
MmeI	TCCRAC	1 cut(s)	415
MnlI	CCTC	4 cut(s)	28, 127, 133, 341
MseI	TTAA	2 cut(s)	145, 245
MspA1I	CMGCKG	1 cut(s)	300
MspR9I	CCNGG	2 cut(s)	383, 406
MvaI	CCWGG	2 cut(s)	383, 406
MwoI	GCNNNNNNNGC	2 cut(s)	306, 339
NlaIII	CATG	2 cut(s)	229, 342
NmeAIII	GCCGAG	1 cut(s)	385
NspI	RCATGY	1 cut(s)	342
PfeI	GAWTC	1 cut(s)	55
PflFI	GACNNNGTC	1 cut(s)	215
PkrI	GCNGC	1 cut(s)	302
Psp6I	CCWGG	2 cut(s)	381, 404
PspGI	CCWGG	2 cut(s)	381, 404
PspPI	GGNCC	2 cut(s)	61, 357
PstI	CTGCAG	1 cut(s)	305
PsyI	GACNNNGTC	1 cut(s)	215
PvuII	CAGCTG	1 cut(s)	300
RsaI	GTAC	2 cut(s)	372, 447
RsaNI	GTAC	2 cut(s)	371, 446
SaqAI	TTAA	2 cut(s)	145, 245
SatI	GCNGC	1 cut(s)	301
Sau96I	GGNCC	2 cut(s)	61, 357
ScaI	AGTACT	1 cut(s)	372
ScrFI	CCNGG	2 cut(s)	383, 406
SetI	ASST	8 cut(s)	138, 144, 182, 192, 302, 366, 384, 410
SfaNI	GCATC	1 cut(s)	283
SfcI	CTRYAG	1 cut(s)	301
SmlI	CTYRAG	1 cut(s)	343
SmoI	CTYRAG	1 cut(s)	343
SpeI	ACTAGT	1 cut(s)	415
Sse9I	AATT	3 cut(s)	117, 410, 452
SspMI	CTAG	1 cut(s)	416
StyD4I	CCNGG	2 cut(s)	381, 404
StyI	CCWWGG	2 cut(s)	220, 278
TaaI	ACNGT	1 cut(s)	445
TaqI	TCGA	2 cut(s)	138, 293
TasI	AATT	3 cut(s)	117, 410, 452
TatI	WGTACW	1 cut(s)	370
TfiI	GAWTC	1 cut(s)	55
Tru1I	TTAA	2 cut(s)	145, 245
Tru9I	TTAA	2 cut(s)	145, 245
TseI	GCWGC	1 cut(s)	300
TspDTI	ATGAA	5 cut(s)	67, 173, 185, 242, 412
Tth111I	GACNNNGTC	1 cut(s)	215
XapI	RAATTY	2 cut(s)	117, 452
XceI	RCATGY	1 cut(s)	342
XmiI	GTMKAC	1 cut(s)	205
XspI	CTAG	1 cut(s)	416
ZrmI	AGTACT	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.