Rroxscaffold_3G00253710

Protein of unknown function, DUF547

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
47774151 .. 47780633
6483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00253710.1

Sequence Viewer

Length: 1539 bp
ATGAGTAGGGCTGTCTTTTTCAACCGAGACAAACAAACCAACCGAATCCAAGCAGAACCAAAGAAGTTGGTAACTGACACTGTCGGTAACCAAAGTCTTGGTATGATACAGGTGGGAAAAGAGAGAATGGAGATTCTGGGCCACGCTCAGACGTTCATACCCAACACAGGCGCTCCAAAAGAAGACTTTGGTTGGGCTAAGTTTAGAGCAGTCACATTTGACATATCTATCATTCCCTCTTTCCCTTTCAGTGCTTCTGACAAGAATTTCGGTATTCGAAGAGGTCGAGTTTTAAGTTCCACAAAGAAGAACAAGAATGAAACACAGATCGAACAGCTACAGTTGCTTTTGCAGGAAGAGAAATCTATGCGTAACATGCTTGAGAGGGCAATGGGCGGAGCTTCAAGTACTCTATCACCTGGACATAGACATTTCTCTGTCCGGACGAAGGAATTGATTTCTGAAATTGAATTACTTGAAGAAGAAGTTGCAAATCGTGAGCAGCATGTTCCCTCTCTCTATAGGAGTATTTTTGAACAGTGTGTTAGTAAGCCACCTTCGGAGCAGAACTCACTTGTTGCTTCCCCTGCTCATATGAAGAATGGATCCAGGAAACATCCCAGTATCATTTCAAGTGCATTTTGTTCTGCAAAAAAATTTCCTTTCCGACATTTCAGAGCTCTAGTTGCCATAGATGACTCGGGAAAAAGAACTTCCAAGACTAGTCATACTCCACTATCTAGTGGCAAAAGTGACATTGATTTTGCAAAGACTCGTTCAAACCTTTCTAAGGTAGAAAAGGTCCTGGAGAAAACTTCCATGCTGCGAACTCTGAAAGATCATCTCCACCAGTGCCCTAGCAAGTTAGCTGAGGAAATGGTCAGGTGTTTGTCTCTAGTTTATTGTTGGCTTTGCAGTGCAGCCTCTGAGAAGATTGAGAAAAACCAATCTCCTTTGCTGTCGAGGTCATCCACTAATGTTTTACAGCCTCCACATGGTACTGAAGATGCCCAAGATTGGTCTGGCAAATCAATGGTAGAAATATCTTGGATATCAACCGATAAGAGAAAGTCTTCTCATGCTTCTTACGCCATTAATAACTATAGAATGTTGGTCGAGCAACTGGAGAAGGTGGATGTCACTCAGATGGAATTGGATGCCCAAATTGCATTTTGGATCAACGTTTACAATGCGCTGCTTATGCATTGGCTTGAAACATTCCTTTCAACTGCCTTAAGGAAGAAGTTTGGGGAAGACAGACAGCTTCAAAATTCAAAATTGGGTCTCCCAGTTTCCGAACCCCTTGTTTGCTTTGCTCTTTGTACCGGAGCTTTTTCTGATCCTGCGTTGAAATCAGCCTCAAATGTTAGAGATGAGCTTGAAGAAGCAAAGAAAGATTTCATCAAAGCAAATGTAGTGGTAAGGAAGTCGAGGAAAGTTTTTCTACCAAAGATGCTTGAAAGATTTTCTAGGGAAGCGTCTTTTGGCTCTGATGATCTTCTCAAATGGGTCACTGACAATGTTGATGAGAAGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

512

Amino Acids

57.88

Weight (kDa)

9.27

Isoelectric Point (pI)

44.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lzipper-MIP1 PF14389 107 - 180 7.6e-16 Leucine-zipper of ternary complex factor MIP1
DUF547 PF04784 413 - 468 1.4e-07 Protein of unknown function, DUF547
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 441
AciI CCGC 1 cut(s) 396
AclI AACGTT 1 cut(s) 1182
AclWI GGATC 4 cut(s) 600, 613, 1184, 1334
AcsI RAATTY 3 cut(s) 265, 656, 1270
AcuI CTGAAG 1 cut(s) 1023
AfaI GTAC 3 cut(s) 409, 1000, 1324
AfiI CCNNNNNNNGG 5 cut(s) 167, 448, 790, 995, 1017
AflII CTTAAG 1 cut(s) 1234
AhlI ACTAGT 1 cut(s) 722
AjnI CCWGG 3 cut(s) 418, 608, 804
AjuI GAANNNNNNNTTGG 2 cut(s) 1467, 1499
AluBI AGCT 8 cut(s) 337, 401, 680, 869, 1264, 1331, 1378, 1534
AluI AGCT 8 cut(s) 337, 401, 680, 869, 1264, 1331, 1378, 1534
Alw21I GWGCWC 1 cut(s) 682
Alw26I GTCTC 3 cut(s) 21, 897, 1289
AlwI GGATC 4 cut(s) 600, 613, 1184, 1334
AlwNI CAGNNNCTG 1 cut(s) 926
Ama87I CYCGRG 1 cut(s) 700
Aor13HI TCCGGA 1 cut(s) 441
AoxI GGCC 1 cut(s) 139
ApeKI GCWGC 4 cut(s) 502, 823, 920, 1195
ApoI RAATTY 3 cut(s) 265, 656, 1270
ArsI GACNNNNNNTTYG 4 cut(s) 251, 283, 746, 778
AseI ATTAAT 1 cut(s) 1095
Asp700I GAANNNNTTC 2 cut(s) 1072, 1397
AspLEI GCGC 2 cut(s) 173, 1195
AspS9I GGNCC 2 cut(s) 139, 802
AsuHPI GGTGA 1 cut(s) 408
AsuII TTCGAA 1 cut(s) 277
AvaI CYCGRG 1 cut(s) 700
AvaII GGWCC 1 cut(s) 802
BaeGI GKGCMC 1 cut(s) 857
BamHI GGATCC 1 cut(s) 605
BanII GRGCYC 1 cut(s) 682
BarI GAAGNNNNNNTAC 2 cut(s) 541, 573
BbsI GAAGAC 3 cut(s) 189, 1065, 1260
Bbv12I GWGCWC 1 cut(s) 682
BbvCI CCTCAGC 1 cut(s) 870
BbvI GCAGC 4 cut(s) 514, 810, 932, 1182
BccI CCATC 1 cut(s) 1141
BciT130I CCWGG 3 cut(s) 420, 610, 806
BcoDI GTCTC 3 cut(s) 21, 897, 1289
BcuI ACTAGT 1 cut(s) 722
BfaI CTAG 6 cut(s) 683, 723, 741, 858, 896, 1470
BfmI CTRYAG 3 cut(s) 338, 520, 1102
BfoI RGCGCY 1 cut(s) 174
BfrI CTTAAG 1 cut(s) 1234
BisI GCNGC 4 cut(s) 503, 824, 921, 1196
BlsI GCNGC 4 cut(s) 504, 825, 922, 1197
BmcAI AGTACT 1 cut(s) 409
Bme1390I CCNGG 3 cut(s) 420, 610, 806
Bme18I GGWCC 1 cut(s) 802
BmeT110I CYCGRG 1 cut(s) 700
BmgT120I GGNCC 2 cut(s) 139, 802
BmiI GGNNCC 1 cut(s) 607
BmrFI CCNGG 3 cut(s) 420, 610, 806
BmrI ACTGGG 2 cut(s) 615, 1283
BmsI GCATC 3 cut(s) 997, 1147, 1443
BmuI ACTGGG 2 cut(s) 615, 1283
BpiI GAAGAC 3 cut(s) 189, 1065, 1260
BplI GAGNNNNNCTC 2 cut(s) 554, 586
BpmI CTGGAG 2 cut(s) 827, 1145
Bpu10I CCTNAGC 1 cut(s) 870
Bpu14I TTCGAA 1 cut(s) 277
BpuEI CTTGAG 1 cut(s) 401
BsaI GGTCTC 1 cut(s) 1289
BsaWI WCCGGW 2 cut(s) 441, 1325
BsaXI ACNNNNNCTCC 2 cut(s) 157, 187
Bsc4I CCNNNNNNNGG 5 cut(s) 167, 448, 790, 995, 1017
Bse1I ACTGG 4 cut(s) 621, 850, 1128, 1289
Bse3DI GCAATG 1 cut(s) 396
BseAI TCCGGA 1 cut(s) 441
BseBI CCWGG 3 cut(s) 420, 610, 806
BseGI GGATG 4 cut(s) 616, 968, 1141, 1162
BseLI CCNNNNNNNGG 5 cut(s) 167, 448, 790, 995, 1017
BseMI GCAATG 1 cut(s) 396
BseMII CTCAG 4 cut(s) 161, 861, 918, 1157
BseNI ACTGG 4 cut(s) 621, 850, 1128, 1289
BseSI GKGCMC 1 cut(s) 857
BseXI GCAGC 4 cut(s) 514, 810, 932, 1182
BsgI GTGCAG 1 cut(s) 939
BshFI GGCC 1 cut(s) 141
BsiHKAI GWGCWC 1 cut(s) 682
BsiHKCI CYCGRG 1 cut(s) 700
BsiSI CCGG 2 cut(s) 442, 1326
BslI CCNNNNNNNGG 5 cut(s) 167, 448, 790, 995, 1017
BsmAI GTCTC 3 cut(s) 21, 897, 1289
BsnI GGCC 1 cut(s) 141
Bso31I GGTCTC 1 cut(s) 1289
BsoBI CYCGRG 1 cut(s) 700
Bsp119I TTCGAA 1 cut(s) 277
Bsp1286I GDGCHC 2 cut(s) 682, 857
Bsp13I TCCGGA 1 cut(s) 441
Bsp143I GATC 6 cut(s) 327, 605, 838, 1176, 1339, 1495
BspACI CCGC 1 cut(s) 396
BspANI GGCC 1 cut(s) 141
BspCNI CTCAG 4 cut(s) 160, 862, 919, 1156
BspEI TCCGGA 1 cut(s) 441
BspLI GGNNCC 1 cut(s) 607
BspPI GGATC 4 cut(s) 600, 613, 1184, 1334
BspT104I TTCGAA 1 cut(s) 277
BspTI CTTAAG 1 cut(s) 1234
BspTNI GGTCTC 1 cut(s) 1289
BsrDI GCAATG 1 cut(s) 396
BsrI ACTGG 4 cut(s) 621, 850, 1128, 1289
BssMI GATC 6 cut(s) 327, 605, 838, 1176, 1339, 1495
Bst2UI CCWGG 3 cut(s) 420, 610, 806
Bst4CI ACNGT 3 cut(s) 82, 342, 540
Bst6I CTCTTC 2 cut(s) 274, 351
BstAFI CTTAAG 1 cut(s) 1234
BstBI TTCGAA 1 cut(s) 277
BstDEI CTNAG 6 cut(s) 147, 198, 789, 870, 927, 1143
BstEII GGTNACC 1 cut(s) 86
BstENI CCTNNNNNAGG 1 cut(s) 788
BstF5I GGATG 4 cut(s) 616, 968, 1141, 1162
BstH2I RGCGCY 1 cut(s) 174
BstHHI GCGC 2 cut(s) 173, 1195
BstKTI GATC 6 cut(s) 330, 608, 841, 1179, 1342, 1498
BstMAI GTCTC 3 cut(s) 21, 897, 1289
BstMBI GATC 6 cut(s) 327, 605, 838, 1176, 1339, 1495
BstMWI GCNNNNNNNGC 7 cut(s) 343, 376, 587, 686, 1088, 1166, 1201
BstNI CCWGG 3 cut(s) 420, 610, 806
BstNSI RCATGY 2 cut(s) 379, 509
BstPI GGTNACC 1 cut(s) 86
BstSCI CCNGG 3 cut(s) 418, 608, 804
BstSFI CTRYAG 3 cut(s) 338, 520, 1102
BstSLI GKGCMC 1 cut(s) 857
BstV1I GCAGC 4 cut(s) 514, 810, 932, 1182
BstV2I GAAGAC 3 cut(s) 189, 1065, 1260
BstX2I RGATCY 1 cut(s) 605
BstXI CCANNNNNNTGG 1 cut(s) 98
BstYI RGATCY 1 cut(s) 605
BsuRI GGCC 1 cut(s) 141
BtsCI GGATG 4 cut(s) 616, 968, 1141, 1162
BtsI GCAGTG 1 cut(s) 922
BtsIMutI CAGTG 6 cut(s) 78, 256, 545, 857, 922, 1512
CaiI CAGNNNCTG 1 cut(s) 926
CfoI GCGC 2 cut(s) 173, 1195
Cfr13I GGNCC 2 cut(s) 139, 802
CseI GACGC 1 cut(s) 1467
Csp6I GTAC 3 cut(s) 408, 999, 1323
CspCI CAANNNNNGTGG 2 cut(s) 1398, 1433
CviAII CATG 5 cut(s) 376, 506, 820, 995, 1079
CviQI GTAC 3 cut(s) 408, 999, 1323
DdeI CTNAG 6 cut(s) 147, 198, 789, 870, 927, 1143
DpnI GATC 6 cut(s) 329, 607, 840, 1178, 1341, 1497
DpnII GATC 6 cut(s) 327, 605, 838, 1176, 1339, 1495
Eam1104I CTCTTC 2 cut(s) 274, 351
EarI CTCTTC 2 cut(s) 274, 351
EciI GGCGGA 1 cut(s) 411
Ecl136II GAGCTC 1 cut(s) 680
Eco24I GRGCYC 1 cut(s) 682
Eco31I GGTCTC 1 cut(s) 1289
Eco32I GATATC 1 cut(s) 1053
Eco47I GGWCC 1 cut(s) 802
Eco53kI GAGCTC 1 cut(s) 680
Eco57I CTGAAG 1 cut(s) 1023
Eco88I CYCGRG 1 cut(s) 700
Eco91I GGTNACC 1 cut(s) 86
EcoICRI GAGCTC 1 cut(s) 680
EcoNI CCTNNNNNAGG 1 cut(s) 788
EcoO109I RGGNCCY 1 cut(s) 802
EcoO65I GGTNACC 1 cut(s) 86
EcoRII CCWGG 3 cut(s) 418, 608, 804
EcoRV GATATC 1 cut(s) 1053
EcoT22I ATGCAT 1 cut(s) 1206
EcoT38I GRGCYC 1 cut(s) 682
FaeI CATG 5 cut(s) 379, 509, 823, 998, 1082
FatI CATG 5 cut(s) 375, 505, 819, 994, 1078
FauNDI CATATG 1 cut(s) 594
Fnu4HI GCNGC 4 cut(s) 503, 824, 921, 1196
FokI GGATG 4 cut(s) 603, 955, 1148, 1169
FriOI GRGCYC 1 cut(s) 682
Fsp4HI GCNGC 4 cut(s) 503, 824, 921, 1196
FspBI CTAG 6 cut(s) 683, 723, 741, 858, 896, 1470
GlaI GCGC 2 cut(s) 172, 1194
GluI GCNGC 4 cut(s) 503, 824, 921, 1196
GsuI CTGGAG 2 cut(s) 827, 1145
HaeII RGCGCY 1 cut(s) 174
HaeIII GGCC 1 cut(s) 141
HapII CCGG 2 cut(s) 442, 1326
HgaI GACGC 1 cut(s) 1467
HhaI GCGC 2 cut(s) 173, 1195
Hin1II CATG 5 cut(s) 379, 509, 823, 998, 1082
Hin6I GCGC 2 cut(s) 171, 1193
HinP1I GCGC 2 cut(s) 171, 1193
HindIII AAGCTT 1 cut(s) 1532
HinfI GANTC 4 cut(s) 45, 133, 698, 772
HpaII CCGG 2 cut(s) 442, 1326
HphI GGTGA 1 cut(s) 408
Hpy166II GTNNAC 1 cut(s) 1186
Hpy188III TCNNGA 3 cut(s) 442, 497, 702
Hpy8I GTNNAC 1 cut(s) 1186
HpyAV CCTTC 3 cut(s) 442, 567, 1123
HpyCH4III ACNGT 3 cut(s) 82, 342, 540
HpyCH4IV ACGT 2 cut(s) 152, 1182
HpyCH4V TGCA 9 cut(s) 352, 491, 638, 650, 767, 915, 920, 1169, 1204
HpyF10VI GCNNNNNNNGC 7 cut(s) 343, 376, 587, 686, 1088, 1166, 1201
HpyF3I CTNAG 6 cut(s) 147, 198, 789, 870, 927, 1143
HpySE526I ACGT 2 cut(s) 152, 1182
Hsp92II CATG 5 cut(s) 379, 509, 823, 998, 1082
HspAI GCGC 2 cut(s) 171, 1193
Kpn2I TCCGGA 1 cut(s) 441
Kzo9I GATC 6 cut(s) 327, 605, 838, 1176, 1339, 1495
LmnI GCTCC 4 cut(s) 178, 398, 562, 1328
Lsp1109I GCAGC 4 cut(s) 514, 810, 932, 1182
LweI GCATC 3 cut(s) 997, 1147, 1443
MaeI CTAG 6 cut(s) 683, 723, 741, 858, 896, 1470
MaeII ACGT 2 cut(s) 152, 1182
MaeIII GTNAC 7 cut(s) 70, 86, 211, 371, 752, 1138, 1510
MalI GATC 6 cut(s) 329, 607, 840, 1178, 1341, 1497
MboI GATC 6 cut(s) 327, 605, 838, 1176, 1339, 1495
MflI RGATCY 1 cut(s) 605
MhlI GDGCHC 2 cut(s) 682, 857
MluCI AATT 9 cut(s) 265, 452, 465, 470, 656, 1151, 1164, 1270, 1277
MlyI GAGTC 2 cut(s) 692, 766
MmeI TCCRAC 1 cut(s) 691
Mph1103I ATGCAT 1 cut(s) 1206
MroI TCCGGA 1 cut(s) 441
MroXI GAANNNNTTC 2 cut(s) 1072, 1397
MseI TTAA 3 cut(s) 293, 1095, 1235
MslI CAYNNNNRTG 1 cut(s) 1145
MspCI CTTAAG 1 cut(s) 1234
MspI CCGG 2 cut(s) 442, 1326
MspR9I CCNGG 3 cut(s) 420, 610, 806
MvaI CCWGG 3 cut(s) 420, 610, 806
MwoI GCNNNNNNNGC 7 cut(s) 343, 376, 587, 686, 1088, 1166, 1201
NdeI CATATG 1 cut(s) 594
NdeII GATC 6 cut(s) 327, 605, 838, 1176, 1339, 1495
NlaIII CATG 5 cut(s) 379, 509, 823, 998, 1082
NlaIV GGNNCC 1 cut(s) 607
NmuCI GTSAC 4 cut(s) 211, 752, 1138, 1510
NsiI ATGCAT 1 cut(s) 1206
NspI RCATGY 2 cut(s) 379, 509
NspV TTCGAA 1 cut(s) 277
PcsI WCGNNNNNNNCGW 1 cut(s) 283
PdmI GAANNNNTTC 2 cut(s) 1072, 1397
PfeI GAWTC 2 cut(s) 45, 133
PflFI GACNNNGTC 1 cut(s) 80
PfoI TCCNGGA 2 cut(s) 608, 804
PkrI GCNGC 4 cut(s) 504, 825, 922, 1197
PleI GAGTC 2 cut(s) 692, 766
PpsI GAGTC 2 cut(s) 692, 766
PpuMI RGGWCCY 1 cut(s) 802
PshBI ATTAAT 1 cut(s) 1095
Psp124BI GAGCTC 1 cut(s) 682
Psp1406I AACGTT 1 cut(s) 1182
Psp5II RGGWCCY 1 cut(s) 802
Psp6I CCWGG 3 cut(s) 418, 608, 804
PspEI GGTNACC 1 cut(s) 86
PspGI CCWGG 3 cut(s) 418, 608, 804
PspN4I GGNNCC 1 cut(s) 607
PspPI GGNCC 2 cut(s) 139, 802
PspPPI RGGWCCY 1 cut(s) 802
PstNI CAGNNNCTG 1 cut(s) 926
PsuI RGATCY 1 cut(s) 605
PsyI GACNNNGTC 1 cut(s) 80
RsaI GTAC 3 cut(s) 409, 1000, 1324
RsaNI GTAC 3 cut(s) 408, 999, 1323
RseI CAYNNNNRTG 1 cut(s) 1145
SacI GAGCTC 1 cut(s) 682
SaqAI TTAA 3 cut(s) 293, 1095, 1235
SatI GCNGC 4 cut(s) 503, 824, 921, 1196
Sau3AI GATC 6 cut(s) 327, 605, 838, 1176, 1339, 1495
Sau96I GGNCC 2 cut(s) 139, 802
ScaI AGTACT 1 cut(s) 409
SchI GAGTC 2 cut(s) 692, 766
ScrFI CCNGG 3 cut(s) 420, 610, 806
SduI GDGCHC 2 cut(s) 682, 857
SfaNI GCATC 3 cut(s) 997, 1147, 1443
SfcI CTRYAG 3 cut(s) 338, 520, 1102
SfuI TTCGAA 1 cut(s) 277
SinI GGWCC 1 cut(s) 802
SmiMI CAYNNNNRTG 1 cut(s) 1145
SmlI CTYRAG 2 cut(s) 380, 1234
SmoI CTYRAG 2 cut(s) 380, 1234
SpeI ACTAGT 1 cut(s) 722
Sse9I AATT 9 cut(s) 265, 452, 465, 470, 656, 1151, 1164, 1270, 1277
SsiI CCGC 1 cut(s) 396
SspMI CTAG 6 cut(s) 683, 723, 741, 858, 896, 1470
SstI GAGCTC 1 cut(s) 682
StyD4I CCNGG 3 cut(s) 418, 608, 804
TaaI ACNGT 3 cut(s) 82, 342, 540
TaiI ACGT 2 cut(s) 155, 1185
TaqI TCGA 6 cut(s) 277, 286, 330, 962, 1116, 1430
TasI AATT 9 cut(s) 265, 452, 465, 470, 656, 1151, 1164, 1270, 1277
TatI WGTACW 1 cut(s) 407
TfiI GAWTC 2 cut(s) 45, 133
Tru1I TTAA 3 cut(s) 293, 1095, 1235
Tru9I TTAA 3 cut(s) 293, 1095, 1235
TscAI CASTG 6 cut(s) 85, 256, 545, 857, 922, 1519
TseFI GTSAC 4 cut(s) 211, 752, 1138, 1510
TseI GCWGC 4 cut(s) 502, 823, 920, 1195
Tsp45I GTSAC 4 cut(s) 211, 752, 1138, 1510
TspDTI ATGAA 4 cut(s) 145, 333, 611, 1390
TspRI CASTG 6 cut(s) 85, 256, 545, 857, 922, 1519
Tth111I GACNNNGTC 1 cut(s) 80
Vha464I CTTAAG 1 cut(s) 1234
VpaK11BI GGWCC 1 cut(s) 802
VspI ATTAAT 1 cut(s) 1095
XagI CCTNNNNNAGG 1 cut(s) 788
XapI RAATTY 3 cut(s) 265, 656, 1270
XceI RCATGY 2 cut(s) 379, 509
XcmI CCANNNNNNNNNTGG 1 cut(s) 1019
XmnI GAANNNNTTC 2 cut(s) 1072, 1397
XspI CTAG 6 cut(s) 683, 723, 741, 858, 896, 1470
ZrmI AGTACT 1 cut(s) 409
Zsp2I ATGCAT 1 cut(s) 1206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.