Rorug07G0077200

Belongs to the MIP aquaporin (TC 1.A.8) family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
5901897 .. 5959436
57540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0077200.1

Sequence Viewer

Length: 1701 bp
ATGCCCCTCGGCGGTGATGATCGTCGGCAATGGATCGTGTTCGCGGAGGGTAGCAGCACCGGAGGCGGGAGGAGCGCCTCGCTTATCGGCGGCGGCGGAACCGGAACCGGCTTCTGGGCTTGGACTGCTCCCTCCAATGTTGGATTAGCCGTCGCCGTCACGGCCATGGCCGGAATCGCCTTGGCCGCCACTGTCGTCTACTCTAGGGGCAGTCTTAAATCACCCTGGTCGCGAAGGAGAAAAAAACACGCACTTCTACCTAAACAATGGAAAAGTTTCTTTACACCAGAAGGGAAACTCACTGATGGTGGTGTCAAGTTCTTAAAAAAAGTTCGCAGTGGAGGTGTTGATCCAAGTATACGAGCTGAAGTGTGGCCTTTCCTCCTTGGAGTCTATGACGTGAACAGTTCTAAGGAAGAAAGAGAATCTGTAAAAACTCAGAAAAGAAGAGAATATGAGGACTTGCGGAGACAATGCCGGAGGCTTTTAACACAAAGCGAAAAGAGCTTTAAGTTAAAAGAAACTTCTGGAAACAGTAGCAATGAGGGCAGTGGGGAGTTTAGTCAAGTTGTAGATTCCACTGGCCCAGGGGATGTTACAAGTTCCAGGGGATCATTTTCAACTGAGGCAGGAAGCAAATTGCCCGAGGATACAAAATACGCTGCCAGCCATCAAGCTGTTCAGATGTCTGAATTATGCGAAGGAGATGGTGAGAAGAGTGGAGTCACCTGTGAAGATGCCTCTGCAGGTGACACAGAATCAACTGATTCTGATTCATCTGAAGATGCTGATATCACTCGACCTTTACTTACTACTGAAGGAACTGAAGAGAATTGTGTTGATGACAATGCTAAGGAAAACTCCTCTGTCTCCAATACAGAAAACAGGCGCAAATCCTACACAGCAGAAGATTATGCCACATGGCAGAGAATCATCCGCCTCGATGCTGTGCGTGCAAATGATGAATGGATAATATATTCACCCTCTCAGGCTGATGTCTCAGAGATCAAGGCACATCGATTAGCTGAGAATGTCGGGATGAAGGATTATGAACACTTGGAGCCATGCAGGATTTTTCATGCTGCTCGCCTGGTTGCAATCCTGGAAGCCTATGCTCTGTATGATCCTGAAATTGGTTACTGCCAAGGGATGAGCGATCTACTTACTCCTATCATCTCAGTGATGGAAGAGGACGATGAAGCCTTCTGGTGCTTTGTGGGTTTTATGAAAAAGGCTCGGCATAACTTCCGGCTGGATGAGGCTGGGATTCGGAGGCAGCTTAGCATTATTTCTAAGATTATCAAGGGCAAAGATGTTACTCTCTATAGACACCTGGAGAAGCTTCAAGCAGAGGATTGCTTTTTTGTGTATAGAATGGTAGTGGTTCTCTTCAGGAGGGAGTTGAGCTTTGAGCAAACACTTTGCCTCTGGGAGGTAATGTGGGCAGATCAGGCTGCAATCAGGGCGGGAATTGCCAAGTCTGCTTGGGGGAGGATGAGGCTGAGAGCCCCGCCCACTGACGATCTCTTGCTGTATGCAATAGCGGCATGTGTGCTGCAGCGAAGGAAGCTGATAGTAGAGAAGTACAGCAGCATGGAAGAGATCATGAGGGAGTGCAATAGCATGGCTGGCTGTCTGGATGTTTGGAAGCTTTTAGACGATGCTCATGATTTGGTGGTAACCCTTAATGACAAGATTTAG

Protein Analysis

566

Amino Acids

63.09

Weight (kDa)

5.58

Isoelectric Point (pI)

44.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RabGAP-TBC PF00566 363 - 490 5.6e-30 Rab-GTPase-TBC domain
RabGap-TBC_2 PF23436 363 - 482 3.6e-15 RabGAP TBC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 737
Acc36I ACCTGC 1 cut(s) 737
AccI GTMKAC 2 cut(s) 198, 358
AccII CGCG 2 cut(s) 44, 232
AclWI GGATC 4 cut(s) 41, 344, 619, 1118
AcoI YGGCCR 3 cut(s) 162, 168, 183
AcuI CTGAAG 5 cut(s) 387, 801, 837, 846, 1375
AfaI GTAC 1 cut(s) 1586
AfiI CCNNNNNNNGG 5 cut(s) 11, 66, 114, 1133, 1432
AgsI TTSAA 2 cut(s) 621, 1346
AjiI CACGTC 1 cut(s) 400
AjnI CCWGG 6 cut(s) 224, 586, 605, 1089, 1101, 1332
AluBI AGCT 9 cut(s) 365, 507, 677, 1025, 1279, 1342, 1407, 1570, 1651
AluI AGCT 9 cut(s) 365, 507, 677, 1025, 1279, 1342, 1407, 1570, 1651
Alw26I GTCTC 3 cut(s) 463, 874, 1003
AlwI GGATC 4 cut(s) 41, 344, 619, 1118
Ama87I CYCGRG 1 cut(s) 644
AoxI GGCC 5 cut(s) 162, 168, 183, 374, 583
ApeKI GCWGC 8 cut(s) 54, 662, 1082, 1276, 1454, 1555, 1558, 1590
Asp700I GAANNNNTTC 1 cut(s) 275
AspLEI GCGC 2 cut(s) 77, 891
AspS9I GGNCC 1 cut(s) 584
AsuHPI GGTGA 6 cut(s) 26, 213, 718, 722, 761, 972
AvaI CYCGRG 1 cut(s) 644
BanII GRGCYC 1 cut(s) 1510
BbvI GCAGC 8 cut(s) 66, 649, 1069, 1288, 1441, 1542, 1570, 1602
BccI CCATC 4 cut(s) 299, 678, 701, 1177
BceAI ACGGC 3 cut(s) 134, 140, 177
BciT130I CCWGG 6 cut(s) 226, 588, 607, 1091, 1103, 1334
BciVI GTATCC 1 cut(s) 643
BcoDI GTCTC 3 cut(s) 463, 874, 1003
BfaI CTAG 1 cut(s) 204
BfmI CTRYAG 3 cut(s) 744, 1324, 1556
BfoI RGCGCY 1 cut(s) 78
BfuAI ACCTGC 1 cut(s) 737
BfuI GTATCC 1 cut(s) 643
BglI GCCNNNNNGGC 1 cut(s) 161
BlpI GCTNAGC 1 cut(s) 1280
Bme1390I CCNGG 6 cut(s) 226, 588, 607, 1091, 1103, 1334
BmeT110I CYCGRG 1 cut(s) 644
BmgBI CACGTC 1 cut(s) 400
BmgT120I GGNCC 1 cut(s) 584
BmiI GGNNCC 3 cut(s) 100, 106, 1062
BmrFI CCNGG 6 cut(s) 226, 588, 607, 1091, 1103, 1334
BmsI GCATC 4 cut(s) 727, 775, 934, 1651
BpmI CTGGAG 1 cut(s) 1355
Bpu10I CCTNAGC 1 cut(s) 852
Bpu1102I GCTNAGC 1 cut(s) 1280
Bsa29I ATCGAT 1 cut(s) 1018
BsaWI WCCGGW 2 cut(s) 59, 101
BsaXI ACNNNNNCTCC 2 cut(s) 1424, 1454
Bsc4I CCNNNNNNNGG 5 cut(s) 11, 66, 114, 1133, 1432
Bse118I RCCGGY 1 cut(s) 107
Bse1I ACTGG 1 cut(s) 586
Bse3DI GCAATG 2 cut(s) 35, 547
BseBI CCWGG 6 cut(s) 226, 588, 607, 1091, 1103, 1334
BseCI ATCGAT 1 cut(s) 1018
BseGI GGATG 7 cut(s) 598, 933, 1044, 1155, 1261, 1500, 1645
BseLI CCNNNNNNNGG 5 cut(s) 11, 66, 114, 1133, 1432
BseMI GCAATG 2 cut(s) 35, 547
BseMII CTCAG 7 cut(s) 452, 615, 1001, 1014, 1017, 1191, 1493
BseNI ACTGG 1 cut(s) 586
BseRI GAGGAG 2 cut(s) 85, 853
BseXI GCAGC 8 cut(s) 66, 649, 1069, 1288, 1441, 1542, 1570, 1602
BseYI CCCAGC 1 cut(s) 1262
Bsh1236I CGCG 2 cut(s) 44, 232
BshFI GGCC 5 cut(s) 164, 170, 185, 376, 585
BshVI ATCGAT 1 cut(s) 1018
BsiHKCI CYCGRG 1 cut(s) 644
BsiSI CCGG 6 cut(s) 60, 102, 108, 171, 478, 1249
BslI CCNNNNNNNGG 5 cut(s) 11, 66, 114, 1133, 1432
BsmAI GTCTC 3 cut(s) 463, 874, 1003
BsnI GGCC 5 cut(s) 164, 170, 185, 376, 585
BsoBI CYCGRG 1 cut(s) 644
Bsp1286I GDGCHC 1 cut(s) 1510
Bsp1720I GCTNAGC 1 cut(s) 1280
Bsp19I CCATGG 1 cut(s) 165
Bsp68I TCGCGA 1 cut(s) 232
BspANI GGCC 5 cut(s) 164, 170, 185, 376, 585
BspCNI CTCAG 7 cut(s) 451, 616, 1000, 1013, 1018, 1190, 1494
BspDI ATCGAT 1 cut(s) 1018
BspFNI CGCG 2 cut(s) 44, 232
BspHI TCATGA 2 cut(s) 1605, 1666
BspLI GGNNCC 3 cut(s) 100, 106, 1062
BspMAI CTGCAG 2 cut(s) 748, 1560
BspMI ACCTGC 1 cut(s) 737
BspPI GGATC 4 cut(s) 41, 344, 619, 1118
BsrDI GCAATG 2 cut(s) 35, 547
BsrFI RCCGGY 1 cut(s) 107
BsrI ACTGG 1 cut(s) 586
BssAI RCCGGY 1 cut(s) 107
BssNAI GTATAC 1 cut(s) 359
BssT1I CCWWGG 4 cut(s) 165, 180, 385, 1144
Bst1107I GTATAC 1 cut(s) 359
Bst2UI CCWGG 6 cut(s) 226, 588, 607, 1091, 1103, 1334
Bst4CI ACNGT 3 cut(s) 193, 407, 536
Bst6I CTCTTC 6 cut(s) 442, 710, 822, 1182, 1394, 1593
BstC8I GCNNGC 4 cut(s) 667, 954, 1087, 1630
BstDSI CCRYGG 1 cut(s) 165
BstEII GGTNACC 1 cut(s) 1678
BstENI CCTNNNNNAGG 1 cut(s) 1430
BstF5I GGATG 7 cut(s) 598, 933, 1044, 1155, 1261, 1500, 1645
BstFNI CGCG 2 cut(s) 44, 232
BstH2I RGCGCY 1 cut(s) 78
BstHHI GCGC 2 cut(s) 77, 891
BstMAI GTCTC 3 cut(s) 463, 874, 1003
BstNI CCWGG 6 cut(s) 226, 588, 607, 1091, 1103, 1334
BstNSI RCATGY 1 cut(s) 1551
BstPI GGTNACC 1 cut(s) 1678
BstSCI CCNGG 6 cut(s) 224, 586, 605, 1089, 1101, 1332
BstSFI CTRYAG 3 cut(s) 744, 1324, 1556
BstUI CGCG 2 cut(s) 44, 232
BstV1I GCAGC 8 cut(s) 66, 649, 1069, 1288, 1441, 1542, 1570, 1602
BstZ17I GTATAC 1 cut(s) 359
Bsu15I ATCGAT 1 cut(s) 1018
BsuI GTATCC 1 cut(s) 643
BsuRI GGCC 5 cut(s) 164, 170, 185, 376, 585
BsuTUI ATCGAT 1 cut(s) 1018
BtgI CCRYGG 1 cut(s) 165
BtrI CACGTC 1 cut(s) 400
BtsCI GGATG 7 cut(s) 598, 933, 1044, 1155, 1261, 1500, 1645
BtsI GCAGTG 2 cut(s) 343, 556
BtsIMutI CAGTG 7 cut(s) 189, 300, 343, 556, 579, 1185, 1515
BtuMI TCGCGA 1 cut(s) 232
BveI ACCTGC 1 cut(s) 737
Cac8I GCNNGC 4 cut(s) 667, 954, 1087, 1630
CciI TCATGA 2 cut(s) 1605, 1666
CfoI GCGC 2 cut(s) 77, 891
Cfr10I RCCGGY 1 cut(s) 107
Cfr13I GGNCC 1 cut(s) 584
ClaI ATCGAT 1 cut(s) 1018
Csp6I GTAC 1 cut(s) 1585
CviAII CATG 9 cut(s) 166, 921, 1065, 1079, 1548, 1594, 1606, 1624, 1667
CviQI GTAC 1 cut(s) 1585
EaeI YGGCCR 3 cut(s) 162, 168, 183
Eam1104I CTCTTC 6 cut(s) 442, 710, 822, 1182, 1394, 1593
EarI CTCTTC 6 cut(s) 442, 710, 822, 1182, 1394, 1593
EciI GGCGGA 2 cut(s) 111, 926
Eco130I CCWWGG 4 cut(s) 165, 180, 385, 1144
Eco24I GRGCYC 1 cut(s) 1510
Eco32I GATATC 1 cut(s) 793
Eco57I CTGAAG 5 cut(s) 387, 801, 837, 846, 1375
Eco88I CYCGRG 1 cut(s) 644
Eco91I GGTNACC 1 cut(s) 1678
EcoNI CCTNNNNNAGG 1 cut(s) 1430
EcoO65I GGTNACC 1 cut(s) 1678
EcoRII CCWGG 6 cut(s) 224, 586, 605, 1089, 1101, 1332
EcoRV GATATC 1 cut(s) 793
EcoT14I CCWWGG 4 cut(s) 165, 180, 385, 1144
EcoT38I GRGCYC 1 cut(s) 1510
ErhI CCWWGG 4 cut(s) 165, 180, 385, 1144
FaeI CATG 9 cut(s) 169, 924, 1068, 1082, 1551, 1597, 1609, 1627, 1670
FatI CATG 9 cut(s) 165, 920, 1064, 1078, 1547, 1593, 1605, 1623, 1666
FauI CCCGC 3 cut(s) 59, 1459, 1518
FblI GTMKAC 2 cut(s) 198, 358
FokI GGATG 7 cut(s) 605, 920, 1051, 1162, 1268, 1507, 1652
FriOI GRGCYC 1 cut(s) 1510
FspBI CTAG 1 cut(s) 204
GlaI GCGC 2 cut(s) 76, 890
GsaI CCCAGC 1 cut(s) 1266
GsuI CTGGAG 1 cut(s) 1355
HaeII RGCGCY 1 cut(s) 78
HaeIII GGCC 5 cut(s) 164, 170, 185, 376, 585
HapII CCGG 6 cut(s) 60, 102, 108, 171, 478, 1249
HhaI GCGC 2 cut(s) 77, 891
Hin1II CATG 9 cut(s) 169, 924, 1068, 1082, 1551, 1597, 1609, 1627, 1670
Hin6I GCGC 2 cut(s) 75, 889
HinP1I GCGC 2 cut(s) 75, 889
HindIII AAGCTT 2 cut(s) 1340, 1649
HpaII CCGG 6 cut(s) 60, 102, 108, 171, 478, 1249
HphI GGTGA 6 cut(s) 26, 213, 718, 722, 761, 972
Hpy166II GTNNAC 3 cut(s) 199, 359, 403
Hpy188I TCNGA 7 cut(s) 441, 684, 691, 772, 781, 1003, 1272
Hpy188III TCNNGA 8 cut(s) 231, 528, 1036, 1127, 1393, 1606, 1637, 1667
Hpy8I GTNNAC 3 cut(s) 199, 359, 403
Hpy99I CGWCG 2 cut(s) 27, 155
HpyAV CCTTC 7 cut(s) 228, 284, 695, 812, 1036, 1213, 1557
HpyCH4III ACNGT 3 cut(s) 193, 407, 536
HpyCH4IV ACGT 1 cut(s) 399
HpyCH4V TGCA 8 cut(s) 746, 956, 1068, 1097, 1457, 1538, 1558, 1617
HpySE526I ACGT 1 cut(s) 399
Hsp92II CATG 9 cut(s) 169, 924, 1068, 1082, 1551, 1597, 1609, 1627, 1670
HspAI GCGC 2 cut(s) 75, 889
LmnI GCTCC 3 cut(s) 72, 133, 1060
Lsp1109I GCAGC 8 cut(s) 66, 649, 1069, 1288, 1441, 1542, 1570, 1602
LweI GCATC 4 cut(s) 727, 775, 934, 1651
MaeI CTAG 1 cut(s) 204
MaeII ACGT 1 cut(s) 399
MaeIII GTNAC 7 cut(s) 157, 595, 724, 749, 1136, 1315, 1678
MhlI GDGCHC 1 cut(s) 1510
MluCI AATT 5 cut(s) 638, 692, 832, 1131, 1470
MlyI GAGTC 2 cut(s) 399, 732
MmeI TCCRAC 1 cut(s) 121
MroXI GAANNNNTTC 1 cut(s) 275
MseI TTAA 6 cut(s) 216, 323, 488, 510, 515, 1686
MslI CAYNNNNRTG 2 cut(s) 164, 1178
MspI CCGG 6 cut(s) 60, 102, 108, 171, 478, 1249
MspR9I CCNGG 6 cut(s) 226, 588, 607, 1091, 1103, 1334
MvaI CCWGG 6 cut(s) 226, 588, 607, 1091, 1103, 1334
MvnI CGCG 2 cut(s) 44, 232
NcoI CCATGG 1 cut(s) 165
NlaIII CATG 9 cut(s) 169, 924, 1068, 1082, 1551, 1597, 1609, 1627, 1670
NlaIV GGNNCC 3 cut(s) 100, 106, 1062
NmeAIII GCCGAG 1 cut(s) 1216
NmuCI GTSAC 3 cut(s) 157, 724, 749
NruI TCGCGA 1 cut(s) 232
NspI RCATGY 1 cut(s) 1551
PagI TCATGA 2 cut(s) 1605, 1666
PaqCI CACCTGC 1 cut(s) 737
PasI CCCWGGG 1 cut(s) 587
PdmI GAANNNNTTC 1 cut(s) 275
PfeI GAWTC 8 cut(s) 174, 425, 575, 758, 767, 773, 930, 1267
PfoI TCCNGGA 1 cut(s) 1101
PleI GAGTC 2 cut(s) 398, 731
PpsI GAGTC 2 cut(s) 398, 731
Psp6I CCWGG 6 cut(s) 224, 586, 605, 1089, 1101, 1332
PspEI GGTNACC 1 cut(s) 1678
PspFI CCCAGC 1 cut(s) 1262
PspGI CCWGG 6 cut(s) 224, 586, 605, 1089, 1101, 1332
PspN4I GGNNCC 3 cut(s) 100, 106, 1062
PspPI GGNCC 1 cut(s) 584
PstI CTGCAG 2 cut(s) 748, 1560
RruI TCGCGA 1 cut(s) 232
RsaI GTAC 1 cut(s) 1586
RsaNI GTAC 1 cut(s) 1585
RseI CAYNNNNRTG 2 cut(s) 164, 1178
SaqAI TTAA 6 cut(s) 216, 323, 488, 510, 515, 1686
Sau96I GGNCC 1 cut(s) 584
SchI GAGTC 2 cut(s) 399, 732
ScrFI CCNGG 6 cut(s) 226, 588, 607, 1091, 1103, 1334
SduI GDGCHC 1 cut(s) 1510
SfaNI GCATC 4 cut(s) 727, 775, 934, 1651
SfcI CTRYAG 3 cut(s) 744, 1324, 1556
SmiMI CAYNNNNRTG 2 cut(s) 164, 1178
Sse9I AATT 5 cut(s) 638, 692, 832, 1131, 1470
SspMI CTAG 1 cut(s) 204
StyD4I CCNGG 6 cut(s) 224, 586, 605, 1089, 1101, 1332
StyI CCWWGG 4 cut(s) 165, 180, 385, 1144
TaaI ACNGT 3 cut(s) 193, 407, 536
TaiI ACGT 1 cut(s) 402
TaqI TCGA 3 cut(s) 799, 942, 1018
TasI AATT 5 cut(s) 638, 692, 832, 1131, 1470
TatI WGTACW 1 cut(s) 1584
TauI GCSGC 4 cut(s) 93, 96, 188, 1547
TfiI GAWTC 8 cut(s) 174, 425, 575, 758, 767, 773, 930, 1267
Tru1I TTAA 6 cut(s) 216, 323, 488, 510, 515, 1686
Tru9I TTAA 6 cut(s) 216, 323, 488, 510, 515, 1686
TscAI CASTG 7 cut(s) 196, 307, 343, 556, 586, 1185, 1522
TseFI GTSAC 3 cut(s) 157, 724, 749
TseI GCWGC 8 cut(s) 54, 662, 1082, 1276, 1454, 1555, 1558, 1590
Tsp45I GTSAC 3 cut(s) 157, 724, 749
TspDTI ATGAA 7 cut(s) 765, 978, 1055, 1065, 1067, 1212, 1241
TspRI CASTG 7 cut(s) 196, 307, 343, 556, 586, 1185, 1522
XagI CCTNNNNNAGG 1 cut(s) 1430
XceI RCATGY 1 cut(s) 1551
XmiI GTMKAC 2 cut(s) 198, 358
XmnI GAANNNNTTC 1 cut(s) 275
XspI CTAG 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.