Rw7G018040

Protein of unknown function, DUF547

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Reverse (-)
19242630 .. 19249204
6575 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G018040.1

Sequence Viewer

Length: 1323 bp
ATGGTGGGTTTTATCTGTAACACAGTTGGAGAGAAAGATGGGTGTCAAGAACAAGCAGGAGGGAAAAGAGAGAATGGAGATTCTGGGCCACGCTCAGATGTTCATACCCAACACAGGCGCTCCAAAAGTGCTTCTGACAAGAATTTTGGTATTCGAAGAGGTCGAGTTTTAAGTTCCACAAAGAAGGACAAGAATGAAACACAGGTTTCATCACCTTCAACAAGTGCGTCTACGGGACAAAGTCCTTGGCATGAAAATCCTATTTATTTTAACAAGAATATGTCATTGAACAACAGAGCATCCTTGGAAAAAGATATCGAACAGCTGCAGTTGCGTTTGCAGGAAGAGAAATCTATGCGTAACATGCTTGAGAGGGCAATGGGCCGAGCTTCAAGTACTCTATCACCTGGACATAGACATTTCTCTGTCCAGACGAAGGAATTGATTTCTGAAATTGAATTACTTGAAGAAGAAGTTGCAAATCGCGAGCAGCAAGTTCTCTCTCTCTATAGGAGTATTTTTGAACAGTGTGTTAGTAAGCCACCTTCGGAGCAGAACTCACTTGTTGCTTCCCCTGCTCATATGAAGAATGGATCCAGGAAACATCCCAGTATCATTTCAAGTGCATTTTGTTCTGCAAAAAATTTTCCTTTCCGACATTTCAGAGCTCTAGTTGCCATAGATGACTCAGGAAAAAGAACTTCCAAGACTAGTCATACTCCACTATCTAGTGGCAAAAGTGACATTGATTTTGCAAAGACTCGTTCAAACCTTTCCAAGGTAGAAAAGGTTCGTGAAAGGGTTCCAGTCCTGGAGAAAACTTCCATGCTGCGAACTCTGAAAGATCATCTCCACCAGTGCCCTAGCAAGTTAGCTGAGGAAATGGTCAGGTGTATGTCTCTAGTTTATTGTTGGCTTTGCAGTGCAGCCTCTGAGAAGATTGAGAAAAACCAATCGCCTTTGCTGTCGAGGTCATCCACTAATGTTTTACAGCCTCCACATGGTACTGAAGATGCCCAAGATTGGTCAGGCAAATCAATGGTAGAAATATCTTGGATATCAACCGATAAGAGAAAGTCTGCTCACGCTTCTTATGCCATTAATAACTATAGAATATTGGTCGAGCAACTGGAGAAGGTGGATGTCACTCAGATGGAATTGGATGGCCAAATTGCATTTTGGATCAACGTTTACAATGCACTGCTTATGCATGCATACTTAGCATATGGAATTCCCAACAGCTCTTTAAGAAGGTTGGCCTTGTTCCATAAGTGCAGGCTGCTTACAACATTGGGGGCCTTGTCATCAGCGCAAATGCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

440

Amino Acids

49.41

Weight (kDa)

9.33

Isoelectric Point (pI)

53.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lzipper-MIP1 PF14389 97 - 176 6.5e-21 Leucine-zipper of ternary complex factor MIP1
DUF547 PF04784 384 - 425 4.8e-10 Protein of unknown function, DUF547
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 230
AccII CGCG 1 cut(s) 486
AclI AACGTT 1 cut(s) 1188
AclWI GGATC 3 cut(s) 588, 601, 1190
AcoI YGGCCR 1 cut(s) 1165
AcsI RAATTY 3 cut(s) 142, 643, 1230
AcuI CTGAAG 1 cut(s) 1029
AfaI GTAC 2 cut(s) 397, 1006
AfiI CCNNNNNNNGG 5 cut(s) 114, 436, 778, 1001, 1023
AgsI TTSAA 8 cut(s) 219, 289, 393, 458, 467, 524, 621, 768
AhlI ACTAGT 1 cut(s) 710
AjnI CCWGG 3 cut(s) 406, 596, 810
AluBI AGCT 5 cut(s) 325, 389, 668, 875, 1242
AluI AGCT 5 cut(s) 325, 389, 668, 875, 1242
Alw21I GWGCWC 1 cut(s) 670
Alw26I GTCTC 1 cut(s) 903
AlwI GGATC 3 cut(s) 588, 601, 1190
AlwNI CAGNNNCTG 1 cut(s) 932
AoxI GGCC 5 cut(s) 86, 382, 1165, 1257, 1296
ApeKI GCWGC 5 cut(s) 325, 490, 829, 926, 1279
ApoI RAATTY 3 cut(s) 142, 643, 1230
ArsI GACNNNNNNTTYG 4 cut(s) 128, 160, 734, 766
AseI ATTAAT 1 cut(s) 1101
Asp700I GAANNNNTTC 2 cut(s) 789, 801
AspLEI GCGC 2 cut(s) 120, 1312
AspS9I GGNCC 3 cut(s) 86, 382, 1296
AsuHPI GGTGA 2 cut(s) 204, 396
AsuII TTCGAA 1 cut(s) 154
BaeGI GKGCMC 1 cut(s) 863
BalI TGGCCA 1 cut(s) 1167
BamHI GGATCC 1 cut(s) 593
BanII GRGCYC 1 cut(s) 670
BarI GAAGNNNNNNTAC 2 cut(s) 529, 561
Bbv12I GWGCWC 1 cut(s) 670
BbvCI CCTCAGC 1 cut(s) 876
BbvI GCAGC 5 cut(s) 312, 502, 816, 938, 1266
BccI CCATC 3 cut(s) 32, 1147, 1157
BciT130I CCWGG 3 cut(s) 408, 598, 812
BcoDI GTCTC 1 cut(s) 903
BcuI ACTAGT 1 cut(s) 710
BfaI CTAG 5 cut(s) 671, 711, 729, 864, 902
BfmI CTRYAG 3 cut(s) 326, 508, 1108
BfoI RGCGCY 1 cut(s) 121
BisI GCNGC 5 cut(s) 326, 491, 830, 927, 1280
BlsI GCNGC 5 cut(s) 327, 492, 831, 928, 1281
BmcAI AGTACT 1 cut(s) 397
Bme1390I CCNGG 3 cut(s) 408, 598, 812
BmgT120I GGNCC 3 cut(s) 86, 382, 1296
BmiI GGNNCC 3 cut(s) 595, 804, 1297
BmrFI CCNGG 3 cut(s) 408, 598, 812
BmrI ACTGGG 1 cut(s) 603
BmsI GCATC 2 cut(s) 308, 1003
BmuI ACTGGG 1 cut(s) 603
BplI GAGNNNNNCTC 2 cut(s) 542, 574
BpmI CTGGAG 2 cut(s) 833, 1151
Bpu10I CCTNAGC 1 cut(s) 876
Bpu14I TTCGAA 1 cut(s) 154
BpuEI CTTGAG 1 cut(s) 389
BsaJI CCNNGG 3 cut(s) 245, 303, 777
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bsc4I CCNNNNNNNGG 5 cut(s) 114, 436, 778, 1001, 1023
Bse1I ACTGG 4 cut(s) 609, 806, 856, 1134
Bse3DI GCAATG 1 cut(s) 384
BseBI CCWGG 3 cut(s) 408, 598, 812
BseDI CCNNGG 3 cut(s) 245, 303, 777
BseGI GGATG 5 cut(s) 299, 604, 974, 1147, 1168
BseLI CCNNNNNNNGG 5 cut(s) 114, 436, 778, 1001, 1023
BseMI GCAATG 1 cut(s) 384
BseMII CTCAG 5 cut(s) 108, 702, 867, 924, 1163
BseNI ACTGG 4 cut(s) 609, 806, 856, 1134
BseSI GKGCMC 1 cut(s) 863
BseXI GCAGC 5 cut(s) 312, 502, 816, 938, 1266
BsgI GTGCAG 2 cut(s) 945, 1294
Bsh1236I CGCG 1 cut(s) 486
BshFI GGCC 5 cut(s) 88, 384, 1167, 1259, 1298
BsiHKAI GWGCWC 1 cut(s) 670
BslFI GGGAC 1 cut(s) 249
BslI CCNNNNNNNGG 5 cut(s) 114, 436, 778, 1001, 1023
BsmAI GTCTC 1 cut(s) 903
BsmFI GGGAC 1 cut(s) 249
BsnI GGCC 5 cut(s) 88, 384, 1167, 1259, 1298
Bsp119I TTCGAA 1 cut(s) 154
Bsp1286I GDGCHC 2 cut(s) 670, 863
Bsp143I GATC 3 cut(s) 593, 844, 1182
Bsp68I TCGCGA 1 cut(s) 486
BspANI GGCC 5 cut(s) 88, 384, 1167, 1259, 1298
BspCNI CTCAG 5 cut(s) 107, 701, 868, 925, 1162
BspFNI CGCG 1 cut(s) 486
BspLI GGNNCC 3 cut(s) 595, 804, 1297
BspMAI CTGCAG 1 cut(s) 330
BspPI GGATC 3 cut(s) 588, 601, 1190
BspT104I TTCGAA 1 cut(s) 154
BsrDI GCAATG 1 cut(s) 384
BsrI ACTGG 4 cut(s) 609, 806, 856, 1134
BssECI CCNNGG 3 cut(s) 245, 303, 777
BssMI GATC 3 cut(s) 593, 844, 1182
BssT1I CCWWGG 3 cut(s) 245, 303, 777
Bst2UI CCWGG 3 cut(s) 408, 598, 812
Bst4CI ACNGT 2 cut(s) 25, 528
Bst6I CTCTTC 2 cut(s) 151, 339
BstBI TTCGAA 1 cut(s) 154
BstC8I GCNNGC 3 cut(s) 488, 1212, 1277
BstDEI CTNAG 6 cut(s) 94, 688, 876, 933, 1149, 1219
BstENI CCTNNNNNAGG 1 cut(s) 776
BstF5I GGATG 5 cut(s) 299, 604, 974, 1147, 1168
BstFNI CGCG 1 cut(s) 486
BstH2I RGCGCY 1 cut(s) 121
BstHHI GCGC 2 cut(s) 120, 1312
BstKTI GATC 3 cut(s) 596, 847, 1185
BstMAI GTCTC 1 cut(s) 903
BstMBI GATC 3 cut(s) 593, 844, 1182
BstMWI GCNNNNNNNGC 6 cut(s) 331, 364, 575, 674, 1094, 1220
BstNI CCWGG 3 cut(s) 408, 598, 812
BstNSI RCATGY 2 cut(s) 367, 1214
BstSCI CCNGG 3 cut(s) 406, 596, 810
BstSFI CTRYAG 3 cut(s) 326, 508, 1108
BstSLI GKGCMC 1 cut(s) 863
BstUI CGCG 1 cut(s) 486
BstV1I GCAGC 5 cut(s) 312, 502, 816, 938, 1266
BstX2I RGATCY 1 cut(s) 593
BstYI RGATCY 1 cut(s) 593
BsuRI GGCC 5 cut(s) 88, 384, 1167, 1259, 1298
BtsCI GGATG 5 cut(s) 299, 604, 974, 1147, 1168
BtsI GCAGTG 2 cut(s) 928, 1199
BtsIMutI CAGTG 4 cut(s) 533, 863, 928, 1199
BtuMI TCGCGA 1 cut(s) 486
Cac8I GCNNGC 3 cut(s) 488, 1212, 1277
CaiI CAGNNNCTG 1 cut(s) 932
CfoI GCGC 2 cut(s) 120, 1312
Cfr13I GGNCC 3 cut(s) 86, 382, 1296
CseI GACGC 1 cut(s) 216
Csp6I GTAC 2 cut(s) 396, 1005
CviAII CATG 5 cut(s) 251, 364, 826, 1001, 1211
CviQI GTAC 2 cut(s) 396, 1005
DdeI CTNAG 6 cut(s) 94, 688, 876, 933, 1149, 1219
DpnI GATC 3 cut(s) 595, 846, 1184
DpnII GATC 3 cut(s) 593, 844, 1182
EaeI YGGCCR 1 cut(s) 1165
Eam1104I CTCTTC 2 cut(s) 151, 339
EarI CTCTTC 2 cut(s) 151, 339
Ecl136II GAGCTC 1 cut(s) 668
Eco130I CCWWGG 3 cut(s) 245, 303, 777
Eco24I GRGCYC 1 cut(s) 670
Eco32I GATATC 2 cut(s) 316, 1059
Eco53kI GAGCTC 1 cut(s) 668
Eco57I CTGAAG 1 cut(s) 1029
EcoICRI GAGCTC 1 cut(s) 668
EcoNI CCTNNNNNAGG 1 cut(s) 776
EcoO109I RGGNCCY 1 cut(s) 1296
EcoRI GAATTC 1 cut(s) 1230
EcoRII CCWGG 3 cut(s) 406, 596, 810
EcoRV GATATC 2 cut(s) 316, 1059
EcoT14I CCWWGG 3 cut(s) 245, 303, 777
EcoT22I ATGCAT 2 cut(s) 1212, 1216
EcoT38I GRGCYC 1 cut(s) 670
ErhI CCWWGG 3 cut(s) 245, 303, 777
FaeI CATG 5 cut(s) 254, 367, 829, 1004, 1214
FaqI GGGAC 1 cut(s) 249
FatI CATG 5 cut(s) 250, 363, 825, 1000, 1210
FauNDI CATATG 2 cut(s) 582, 1225
FblI GTMKAC 1 cut(s) 230
Fnu4HI GCNGC 5 cut(s) 326, 491, 830, 927, 1280
FokI GGATG 5 cut(s) 286, 591, 961, 1154, 1175
FriOI GRGCYC 1 cut(s) 670
Fsp4HI GCNGC 5 cut(s) 326, 491, 830, 927, 1280
FspBI CTAG 5 cut(s) 671, 711, 729, 864, 902
GlaI GCGC 2 cut(s) 119, 1311
GluI GCNGC 5 cut(s) 326, 491, 830, 927, 1280
GsuI CTGGAG 2 cut(s) 833, 1151
HaeII RGCGCY 1 cut(s) 121
HaeIII GGCC 5 cut(s) 88, 384, 1167, 1259, 1298
HgaI GACGC 1 cut(s) 216
HhaI GCGC 2 cut(s) 120, 1312
Hin1II CATG 5 cut(s) 254, 367, 829, 1004, 1214
Hin6I GCGC 2 cut(s) 118, 1310
HinP1I GCGC 2 cut(s) 118, 1310
HinfI GANTC 3 cut(s) 80, 686, 760
HphI GGTGA 2 cut(s) 204, 396
Hpy166II GTNNAC 2 cut(s) 231, 1192
Hpy188I TCNGA 9 cut(s) 97, 136, 451, 550, 656, 665, 840, 934, 1152
Hpy188III TCNNGA 5 cut(s) 47, 430, 485, 690, 794
Hpy8I GTNNAC 2 cut(s) 231, 1192
HpyAV CCTTC 6 cut(s) 178, 225, 430, 555, 1129, 1245
HpyCH4III ACNGT 2 cut(s) 25, 528
HpyCH4IV ACGT 1 cut(s) 1188
HpyF10VI GCNNNNNNNGC 6 cut(s) 331, 364, 575, 674, 1094, 1220
HpyF3I CTNAG 6 cut(s) 94, 688, 876, 933, 1149, 1219
HpySE526I ACGT 1 cut(s) 1188
Hsp92II CATG 5 cut(s) 254, 367, 829, 1004, 1214
HspAI GCGC 2 cut(s) 118, 1310
Kzo9I GATC 3 cut(s) 593, 844, 1182
LmnI GCTCC 2 cut(s) 125, 550
Lsp1109I GCAGC 5 cut(s) 312, 502, 816, 938, 1266
LweI GCATC 2 cut(s) 308, 1003
MaeI CTAG 5 cut(s) 671, 711, 729, 864, 902
MaeII ACGT 1 cut(s) 1188
MaeIII GTNAC 4 cut(s) 17, 359, 740, 1144
MalI GATC 3 cut(s) 595, 846, 1184
MboI GATC 3 cut(s) 593, 844, 1182
MboII GAAGA 7 cut(s) 168, 356, 479, 482, 598, 949, 1022
MflI RGATCY 1 cut(s) 593
MhlI GDGCHC 2 cut(s) 670, 863
MlsI TGGCCA 1 cut(s) 1167
MluCI AATT 8 cut(s) 142, 440, 453, 458, 643, 1157, 1170, 1230
MluNI TGGCCA 1 cut(s) 1167
MlyI GAGTC 2 cut(s) 680, 754
MmeI TCCRAC 2 cut(s) 7, 679
MnlI CCTC 7 cut(s) 53, 152, 366, 871, 940, 963, 1005
Mox20I TGGCCA 1 cut(s) 1167
Mph1103I ATGCAT 2 cut(s) 1212, 1216
MroXI GAANNNNTTC 2 cut(s) 789, 801
MscI TGGCCA 1 cut(s) 1167
MseI TTAA 4 cut(s) 170, 270, 1101, 1247
MslI CAYNNNNRTG 1 cut(s) 1151
Msp20I TGGCCA 1 cut(s) 1167
MspA1I CMGCKG 1 cut(s) 325
MspR9I CCNGG 3 cut(s) 408, 598, 812
MvaI CCWGG 3 cut(s) 408, 598, 812
MvnI CGCG 1 cut(s) 486
MwoI GCNNNNNNNGC 6 cut(s) 331, 364, 575, 674, 1094, 1220
NdeI CATATG 2 cut(s) 582, 1225
NdeII GATC 3 cut(s) 593, 844, 1182
NlaIII CATG 5 cut(s) 254, 367, 829, 1004, 1214
NlaIV GGNNCC 3 cut(s) 595, 804, 1297
NmeAIII GCCGAG 1 cut(s) 410
NmuCI GTSAC 2 cut(s) 740, 1144
NruI TCGCGA 1 cut(s) 486
NsiI ATGCAT 2 cut(s) 1212, 1216
NspI RCATGY 2 cut(s) 367, 1214
NspV TTCGAA 1 cut(s) 154
PaeI GCATGC 1 cut(s) 1214
PcsI WCGNNNNNNNCGW 1 cut(s) 160
PdmI GAANNNNTTC 2 cut(s) 789, 801
PfeI GAWTC 1 cut(s) 80
PflFI GACNNNGTC 1 cut(s) 240
PfoI TCCNGGA 2 cut(s) 596, 810
PkrI GCNGC 5 cut(s) 327, 492, 831, 928, 1281
PleI GAGTC 2 cut(s) 680, 754
PpsI GAGTC 2 cut(s) 680, 754
PshBI ATTAAT 1 cut(s) 1101
Psp124BI GAGCTC 1 cut(s) 670
Psp1406I AACGTT 1 cut(s) 1188
Psp6I CCWGG 3 cut(s) 406, 596, 810
PspGI CCWGG 3 cut(s) 406, 596, 810
PspN4I GGNNCC 3 cut(s) 595, 804, 1297
PspPI GGNCC 3 cut(s) 86, 382, 1296
PsrI GAACNNNNNNTAC 2 cut(s) 774, 806
PstI CTGCAG 1 cut(s) 330
PstNI CAGNNNCTG 1 cut(s) 932
PsuI RGATCY 1 cut(s) 593
PsyI GACNNNGTC 1 cut(s) 240
PvuII CAGCTG 1 cut(s) 325
RruI TCGCGA 1 cut(s) 486
RsaI GTAC 2 cut(s) 397, 1006
RsaNI GTAC 2 cut(s) 396, 1005
RseI CAYNNNNRTG 1 cut(s) 1151
SacI GAGCTC 1 cut(s) 670
SaqAI TTAA 4 cut(s) 170, 270, 1101, 1247
SatI GCNGC 5 cut(s) 326, 491, 830, 927, 1280
Sau3AI GATC 3 cut(s) 593, 844, 1182
Sau96I GGNCC 3 cut(s) 86, 382, 1296
ScaI AGTACT 1 cut(s) 397
SchI GAGTC 2 cut(s) 680, 754
ScrFI CCNGG 3 cut(s) 408, 598, 812
SduI GDGCHC 2 cut(s) 670, 863
SfaNI GCATC 2 cut(s) 308, 1003
SfcI CTRYAG 3 cut(s) 326, 508, 1108
SfuI TTCGAA 1 cut(s) 154
SmiMI CAYNNNNRTG 1 cut(s) 1151
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
SpeI ACTAGT 1 cut(s) 710
SphI GCATGC 1 cut(s) 1214
Sse9I AATT 8 cut(s) 142, 440, 453, 458, 643, 1157, 1170, 1230
SspI AATATT 1 cut(s) 1116
SspMI CTAG 5 cut(s) 671, 711, 729, 864, 902
SstI GAGCTC 1 cut(s) 670
StyD4I CCNGG 3 cut(s) 406, 596, 810
StyI CCWWGG 3 cut(s) 245, 303, 777
TaaI ACNGT 2 cut(s) 25, 528
TaiI ACGT 1 cut(s) 1191
TaqI TCGA 5 cut(s) 154, 163, 318, 968, 1122
TasI AATT 8 cut(s) 142, 440, 453, 458, 643, 1157, 1170, 1230
TatI WGTACW 1 cut(s) 395
TfiI GAWTC 1 cut(s) 80
Tru1I TTAA 4 cut(s) 170, 270, 1101, 1247
Tru9I TTAA 4 cut(s) 170, 270, 1101, 1247
TscAI CASTG 4 cut(s) 533, 863, 928, 1206
TseFI GTSAC 2 cut(s) 740, 1144
TseI GCWGC 5 cut(s) 325, 490, 829, 926, 1279
Tsp45I GTSAC 2 cut(s) 740, 1144
TspDTI ATGAA 5 cut(s) 92, 198, 210, 267, 599
TspRI CASTG 4 cut(s) 533, 863, 928, 1206
Tth111I GACNNNGTC 1 cut(s) 240
VspI ATTAAT 1 cut(s) 1101
XagI CCTNNNNNAGG 1 cut(s) 776
XapI RAATTY 3 cut(s) 142, 643, 1230
XceI RCATGY 2 cut(s) 367, 1214
XmiI GTMKAC 1 cut(s) 230
XmnI GAANNNNTTC 2 cut(s) 789, 801
XspI CTAG 5 cut(s) 671, 711, 729, 864, 902
ZrmI AGTACT 1 cut(s) 397
Zsp2I ATGCAT 2 cut(s) 1212, 1216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.