Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008360.1

Orthogroup ID

OG0005651

Physical Location & Seq

Genomic Coordinates Forward (+)

43466 .. 44888

Gene Structure 1423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008360.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

atgatcttacaatccgtttctgcgagtttcgacttctcgcagcctcttttcgtgcactgcccatgtggaaattccgccattacaaacagcagttgggctcgttcttcagctgctggaagaagaaggaagcaggtgcttatagccagttttcggcgcaaaggtgttagaagaaaactgggttttactgcttgtgcgatttccccagatgggtcgggcactaatatgaatatagagattgcaaattcaactagaagggccgccaagaactcggtgctgaagcgtttttcaagtgaattggatgcgctcgatgagttttcggatgagtcacagattcaaatgggttccaatttcacaagttttcaagaagacccttttgtcaataagcttaggactcagctaggagtcatacacccaatgccgtcgcctccgataaaccgaaacattgtggggttgtttgtcttcttcttttttgtgggggctgggtttgacaagttttggacttcaaggaagaaaagcaagcggggaggtgagaatggtccgagggaggcgtggccgcaagtgcctaccagcttctcgttgtttgtggagaaggatttgcagaggaaggagtcggtggaatgggttaacatggttttggggaagctctggaaggtttacagagccgggcttgagaattggctcattgggttgcttcagccggtcattgataacttgaagaagcctgactatgttgagagagttgaaatcaagcagttttcgctgggggacgaaccattgtctgttaggaatgtcgaaaggagaacatcccgtcgtgtcaatgatctacagtaccaaataggtctacgttatactggtggagctcgtatgctgttaatgcttacactgaaatttagcattattcccatttacgtgccagttggtgttcgagattttgatattgatggagagctttgggtcaaattacggctaataccaacagcgccgtgggtgggagctgttcaatgggcttttgtctcacttcccaagatcaaatttgaattgtcaccattccgcttgttcaacttaatgggtatgtcattagtgaatttggtttcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044232 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

365

Amino Acids

41.39

Weight (kDa)

10.06

Isoelectric Point (pI)

48.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50260 AT1G50260 AT3G19830 AT3G19830 AT3G19830 AT3G19830
fragaria_vesca	FvH4_4g36720 FvH4_4g36720 FvH4_4g36720 FvH4_4g36720 FvH4_4g36720 FvH4_4g36720
malus_domestica	MD13G1007800.v1.1 MD16G1000300.v1.1
prunus_persica	Prupe.1G345200_v2.0.a1
pyrus_communis	pycom13g00640 pycom16g00490
rosa_chinensis	RchiOBHm_Chr4g0446431
rosa_multiflora	Rmu_sc0008360.1_g000007 Rmu_sc0009970.1_g000002
rosa_roxburghii	Rroxscaffold_5G00386870
rosa_rugosa	Rorug04G0371300 Rorug04G0371400
rosa_samantha	Rh4AG432900 Rh4BG442000 Rh4CG459400 Rh4DG440800
rosa_wichuraiana	Rw4G036980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	121
AasI	GACNNNNNNGTC	1 cut(s)	374
Acc36I	ACCTGC	1 cut(s)	121
AccI	GTMKAC	1 cut(s)	841
AciI	CCGC	5 cut(s)	75, 258, 520, 554, 1051
AcoI	YGGCCR	1 cut(s)	551
AcsI	RAATTY	5 cut(s)	70, 241, 887, 1031, 1084
AcuI	CTGAAG	3 cut(s)	90, 296, 677
AfaI	GTAC	1 cut(s)	830
AfiI	CCNNNNNNNGG	3 cut(s)	150, 207, 989
AluBI	AGCT	8 cut(s)	110, 385, 397, 570, 643, 860, 949, 995
AluI	AGCT	8 cut(s)	110, 385, 397, 570, 643, 860, 949, 995
Alw21I	GWGCWC	2 cut(s)	57, 862
Alw26I	GTCTC	1 cut(s)	1018
Alw44I	GTGCAC	1 cut(s)	53
AlwNI	CAGNNNCTG	1 cut(s)	113
AoxI	GGCC	2 cut(s)	255, 551
ApaLI	GTGCAC	1 cut(s)	53
ApeKI	GCWGC	2 cut(s)	40, 110
ApoI	RAATTY	5 cut(s)	70, 241, 887, 1031, 1084
AspLEI	GCGC	3 cut(s)	156, 304, 982
AspS9I	GGNCC	2 cut(s)	255, 536
AsuC2I	CCSGG	1 cut(s)	664
AsuHPI	GGTGA	2 cut(s)	539, 1035
AvaII	GGWCC	1 cut(s)	536
BaeGI	GKGCMC	2 cut(s)	57, 218
BanII	GRGCYC	2 cut(s)	100, 862
BbsI	GAAGAC	2 cut(s)	372, 451
Bbv12I	GWGCWC	2 cut(s)	57, 862
BbvI	GCAGC	2 cut(s)	52, 97
BccI	CCATC	2 cut(s)	200, 935
BceAI	ACGGC	3 cut(s)	403, 967, 980
BcnI	CCSGG	1 cut(s)	664
BcoDI	GTCTC	1 cut(s)	1018
BfaI	CTAG	2 cut(s)	249, 398
BfmI	CTRYAG	1 cut(s)	824
BfoI	RGCGCY	1 cut(s)	983
BfuAI	ACCTGC	1 cut(s)	121
BisI	GCNGC	4 cut(s)	41, 111, 258, 554
BlsI	GCNGC	4 cut(s)	42, 112, 259, 555
Bme1390I	CCNGG	1 cut(s)	664
Bme18I	GGWCC	1 cut(s)	536
BmgT120I	GGNCC	2 cut(s)	255, 536
BmiI	GGNNCC	1 cut(s)	343
BmrFI	CCNGG	1 cut(s)	664
BmrI	ACTGGG	1 cut(s)	185
BmsI	GCATC	1 cut(s)	289
BmuI	ACTGGG	1 cut(s)	185
BpiI	GAAGAC	2 cut(s)	372, 451
Bpu10I	CCTNAGC	1 cut(s)	386
BpuEI	CTTGAG	1 cut(s)	689
BpuMI	CCSGG	1 cut(s)	664
BsaAI	YACGTR	1 cut(s)	910
BsaJI	CCNNGG	2 cut(s)	539, 983
Bsc4I	CCNNNNNNNGG	3 cut(s)	150, 207, 989
Bse118I	RCCGGY	1 cut(s)	697
Bse1I	ACTGG	4 cut(s)	144, 180, 856, 914
BseDI	CCNNGG	2 cut(s)	539, 983
BseGI	GGATG	3 cut(s)	304, 325, 803
BseLI	CCNNNNNNNGG	3 cut(s)	150, 207, 989
BseMII	CTCAG	1 cut(s)	407
BseNI	ACTGG	4 cut(s)	144, 180, 856, 914
BseSI	GKGCMC	2 cut(s)	57, 218
BseXI	GCAGC	2 cut(s)	52, 97
BseYI	CCCAGC	2 cut(s)	479, 760
BshFI	GGCC	2 cut(s)	257, 553
BsiHKAI	GWGCWC	2 cut(s)	57, 862
BsiSI	CCGG	2 cut(s)	663, 698
BslFI	GGGAC	1 cut(s)	779
BslI	CCNNNNNNNGG	3 cut(s)	150, 207, 989
BsmAI	GTCTC	1 cut(s)	1018
BsmFI	GGGAC	1 cut(s)	779
BsnI	GGCC	2 cut(s)	257, 553
Bsp1286I	GDGCHC	4 cut(s)	57, 100, 218, 862
Bsp143I	GATC	3 cut(s)	3, 820, 1026
BspACI	CCGC	5 cut(s)	75, 258, 520, 554, 1051
BspANI	GGCC	2 cut(s)	257, 553
BspCNI	CTCAG	1 cut(s)	406
BspLI	GGNNCC	1 cut(s)	343
BspMI	ACCTGC	1 cut(s)	121
BsrFI	RCCGGY	1 cut(s)	697
BsrI	ACTGG	4 cut(s)	144, 180, 856, 914
BssAI	RCCGGY	1 cut(s)	697
BssECI	CCNNGG	2 cut(s)	539, 983
BssMI	GATC	3 cut(s)	3, 820, 1026
Bst4CI	ACNGT	1 cut(s)	828
BstBAI	YACGTR	1 cut(s)	910
BstC8I	GCNNGC	1 cut(s)	518
BstDEI	CTNAG	2 cut(s)	386, 393
BstDSI	CCRYGG	1 cut(s)	983
BstF5I	GGATG	3 cut(s)	304, 325, 803
BstH2I	RGCGCY	1 cut(s)	983
BstHHI	GCGC	3 cut(s)	156, 304, 982
BstKTI	GATC	3 cut(s)	6, 823, 1029
BstMAI	GTCTC	1 cut(s)	1018
BstMBI	GATC	3 cut(s)	3, 820, 1026
BstMWI	GCNNNNNNNGC	3 cut(s)	559, 757, 874
BstSCI	CCNGG	1 cut(s)	662
BstSFI	CTRYAG	1 cut(s)	824
BstSLI	GKGCMC	2 cut(s)	57, 218
BstV1I	GCAGC	2 cut(s)	52, 97
BstV2I	GAAGAC	2 cut(s)	372, 451
BsuRI	GGCC	2 cut(s)	257, 553
BtgI	CCRYGG	1 cut(s)	983
BtsCI	GGATG	3 cut(s)	304, 325, 803
BtsI	GCAGTG	1 cut(s)	55
BtsIMutI	CAGTG	2 cut(s)	55, 881
BveI	ACCTGC	1 cut(s)	121
Cac8I	GCNNGC	1 cut(s)	518
CaiI	CAGNNNCTG	1 cut(s)	113
CfoI	GCGC	3 cut(s)	156, 304, 982
Cfr10I	RCCGGY	1 cut(s)	697
Cfr13I	GGNCC	2 cut(s)	255, 536
Csp6I	GTAC	1 cut(s)	829
CviAII	CATG	2 cut(s)	63, 628
CviQI	GTAC	1 cut(s)	829
DdeI	CTNAG	2 cut(s)	386, 393
DpnI	GATC	3 cut(s)	5, 822, 1028
DpnII	GATC	3 cut(s)	3, 820, 1026
DrdI	GACNNNNNNGTC	1 cut(s)	374
DseDI	GACNNNNNNGTC	1 cut(s)	374
EaeI	YGGCCR	1 cut(s)	551
EciI	GGCGGA	1 cut(s)	64
Ecl136II	GAGCTC	1 cut(s)	860
Eco24I	GRGCYC	2 cut(s)	100, 862
Eco47I	GGWCC	1 cut(s)	536
Eco53kI	GAGCTC	1 cut(s)	860
Eco57I	CTGAAG	3 cut(s)	90, 296, 677
EcoICRI	GAGCTC	1 cut(s)	860
EcoT38I	GRGCYC	2 cut(s)	100, 862
FaeI	CATG	2 cut(s)	66, 631
FaqI	GGGAC	1 cut(s)	779
FatI	CATG	2 cut(s)	62, 627
FauI	CCCGC	1 cut(s)	513
FblI	GTMKAC	1 cut(s)	841
Fnu4HI	GCNGC	4 cut(s)	41, 111, 258, 554
FokI	GGATG	3 cut(s)	311, 332, 790
FriOI	GRGCYC	2 cut(s)	100, 862
Fsp4HI	GCNGC	4 cut(s)	41, 111, 258, 554
FspBI	CTAG	2 cut(s)	249, 398
GlaI	GCGC	3 cut(s)	155, 303, 981
GluI	GCNGC	4 cut(s)	41, 111, 258, 554
GsaI	CCCAGC	2 cut(s)	483, 764
HaeII	RGCGCY	1 cut(s)	983
HaeIII	GGCC	2 cut(s)	257, 553
HapII	CCGG	2 cut(s)	663, 698
HhaI	GCGC	3 cut(s)	156, 304, 982
Hin1II	CATG	2 cut(s)	66, 631
Hin6I	GCGC	3 cut(s)	154, 302, 980
HinP1I	GCGC	3 cut(s)	154, 302, 980
HincII	GTYRAC	1 cut(s)	625
HindII	GTYRAC	1 cut(s)	625
HindIII	AAGCTT	1 cut(s)	383
HinfI	GANTC	5 cut(s)	323, 331, 391, 402, 608
HpaI	GTTAAC	1 cut(s)	625
HpaII	CCGG	2 cut(s)	663, 698
HphI	GGTGA	2 cut(s)	539, 1035
Hpy166II	GTNNAC	4 cut(s)	55, 625, 655, 842
Hpy188I	TCNGA	3 cut(s)	319, 429, 540
Hpy188III	TCNNGA	3 cut(s)	362, 646, 926
Hpy8I	GTNNAC	4 cut(s)	55, 625, 655, 842
Hpy99I	CGWCG	2 cut(s)	424, 813
HpyAV	CCTTC	5 cut(s)	117, 246, 583, 598, 643
HpyCH4III	ACNGT	1 cut(s)	828
HpyCH4IV	ACGT	2 cut(s)	844, 909
HpyCH4V	TGCA	3 cut(s)	55, 239, 598
HpyF10VI	GCNNNNNNNGC	3 cut(s)	559, 757, 874
HpyF3I	CTNAG	2 cut(s)	386, 393
HpySE526I	ACGT	2 cut(s)	844, 909
Hsp92II	CATG	2 cut(s)	66, 631
HspAI	GCGC	3 cut(s)	154, 302, 980
KspAI	GTTAAC	1 cut(s)	625
Kzo9I	GATC	3 cut(s)	3, 820, 1026
LmnI	GCTCC	2 cut(s)	857, 992
Lsp1109I	GCAGC	2 cut(s)	52, 97
LweI	GCATC	1 cut(s)	289
MaeI	CTAG	2 cut(s)	249, 398
MaeII	ACGT	2 cut(s)	844, 909
MaeIII	GTNAC	2 cut(s)	324, 1041
MalI	GATC	3 cut(s)	5, 822, 1028
MboI	GATC	3 cut(s)	3, 820, 1026
MboII	GAAGA	9 cut(s)	96, 129, 132, 180, 377, 451, 454, 520, 727
MhlI	GDGCHC	4 cut(s)	57, 100, 218, 862
MlyI	GAGTC	4 cut(s)	332, 385, 411, 617
MnlI	CCTC	6 cut(s)	54, 435, 518, 534, 538, 594
MseI	TTAA	3 cut(s)	624, 872, 1064
MslI	CAYNNNNRTG	2 cut(s)	221, 908
MspA1I	CMGCKG	1 cut(s)	110
MspI	CCGG	2 cut(s)	663, 698
MspR9I	CCNGG	1 cut(s)	664
MwoI	GCNNNNNNNGC	3 cut(s)	559, 757, 874
NciI	CCSGG	1 cut(s)	664
NdeII	GATC	3 cut(s)	3, 820, 1026
NlaIII	CATG	2 cut(s)	66, 631
NlaIV	GGNNCC	1 cut(s)	343
NmuCI	GTSAC	2 cut(s)	324, 1041
PaqCI	CACCTGC	1 cut(s)	121
PfeI	GAWTC	1 cut(s)	331
PkrI	GCNGC	4 cut(s)	42, 112, 259, 555
PleI	GAGTC	4 cut(s)	331, 385, 410, 616
PpsI	GAGTC	4 cut(s)	331, 385, 410, 616
Ppu21I	YACGTR	1 cut(s)	910
Psp124BI	GAGCTC	1 cut(s)	862
PspFI	CCCAGC	2 cut(s)	479, 760
PspN4I	GGNNCC	1 cut(s)	343
PspPI	GGNCC	2 cut(s)	255, 536
PstNI	CAGNNNCTG	1 cut(s)	113
PvuII	CAGCTG	1 cut(s)	110
RsaI	GTAC	1 cut(s)	830
RsaNI	GTAC	1 cut(s)	829
RseI	CAYNNNNRTG	2 cut(s)	221, 908
SacI	GAGCTC	1 cut(s)	862
SaqAI	TTAA	3 cut(s)	624, 872, 1064
SatI	GCNGC	4 cut(s)	41, 111, 258, 554
Sau3AI	GATC	3 cut(s)	3, 820, 1026
Sau96I	GGNCC	2 cut(s)	255, 536
SchI	GAGTC	4 cut(s)	332, 385, 411, 617
ScrFI	CCNGG	1 cut(s)	664
SduI	GDGCHC	4 cut(s)	57, 100, 218, 862
SfaNI	GCATC	1 cut(s)	289
SfcI	CTRYAG	1 cut(s)	824
SinI	GGWCC	1 cut(s)	536
SmiMI	CAYNNNNRTG	2 cut(s)	221, 908
SmlI	CTYRAG	1 cut(s)	668
SmoI	CTYRAG	1 cut(s)	668
SsiI	CCGC	5 cut(s)	75, 258, 520, 554, 1051
SspMI	CTAG	2 cut(s)	249, 398
SstI	GAGCTC	1 cut(s)	862
StyD4I	CCNGG	1 cut(s)	662
TaaI	ACNGT	1 cut(s)	828
TaiI	ACGT	2 cut(s)	847, 912
TaqI	TCGA	4 cut(s)	30, 306, 792, 925
TauI	GCSGC	2 cut(s)	260, 556
TfiI	GAWTC	1 cut(s)	331
Tru1I	TTAA	3 cut(s)	624, 872, 1064
Tru9I	TTAA	3 cut(s)	624, 872, 1064
TscAI	CASTG	2 cut(s)	62, 888
TseFI	GTSAC	2 cut(s)	324, 1041
TseI	GCWGC	2 cut(s)	40, 110
Tsp45I	GTSAC	2 cut(s)	324, 1041
TspDTI	ATGAA	1 cut(s)	239
TspGWI	ACGGA	1 cut(s)	4
TspRI	CASTG	2 cut(s)	62, 888
VneI	GTGCAC	1 cut(s)	53
VpaK11BI	GGWCC	1 cut(s)	536
XapI	RAATTY	5 cut(s)	70, 241, 887, 1031, 1084
XcmI	CCANNNNNNNNNTGG	1 cut(s)	981
XmiI	GTMKAC	1 cut(s)	841
XspI	CTAG	2 cut(s)	249, 398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.