Rmu_sc0009970.1_g000002

Protein kinase C conserved region 2 (CalB)

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009970.1
Physical Location & Seq
Reverse (-)
7837 .. 11472
3636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009970.1_g000002.1.cds

Sequence Viewer

Length: 1647 bp
atgatcttacaatccgtttctgcgagtttcgacttctcgcagcctcttttcgtgcactgcccatgtggaaattccgccattacaaacagcagttgggctcgttcttcagctgctggaagaagaaggaagcaggtgcttatagccagttttcggcgcaaaggtgttagaagaaaactgggttttactgcttgtgcgatttccccagatgggtcgggcactaatatgaatatagagattgcaaattcaactagaagggccgccaagaactcggtgctgaagcgtttttcaagtgaattggatgcgctcgatgagttttcggatgagtcacagattcaaatgggttccaatttcacaagttttcaagaagacccttttgttaataagcttaggactcagctaggagtcatacacccaatgccgtcgcctccgataaaccgaaacattgtggggttgtttgtcttcttattttttgtgggggttgggtttgacaagttctggacctcaaggaagaaaagcaagcggggtggtgagaatggtccgagggaggcgtggccgcaagtgcctaccagcttctcattgtttttggagaaggatttgcagaggaaggagccggtggaatgggtgaacatggttctggggaagctctggaaggtttacagagccgggcttgagaattggctcattgggttgcttcagccggtcattgataacttgaagaagcctgactatgttgagagagttgaaatcaagcagttttcgctgggggacgaaccattgtctgttaggaatgtcgaaaggagaacatcccgtcgtgtcaatgatctacagtaccaaataggtctacgttatactggtggcgctcgtatgctgttaatgcttacactgaaatttagcattattcccatttacgtgccagtcggtgttcgagattttgatattgatggagagctttgggtcaaattacggctaataccaacggcgccgtgggtgggagctgttcaatgggcttttgtctcacttcccaagatcaaatttgaattgtcaccattccgcttgttcaacttaatggcaatccctgttctatcaatgtttttgactaaacttctcacagaggatttacctagactatttgtacgcccaaaaaagagtgttttggatttccagaaagtaaaagcagttggccctgtaggagatgatttcaagtcaggggacatgcaagaaggaaacaaggattttgttggagaattatcagtgacccttgtagatgctcggaagctttcttatgtcttttatggcaaaacagatccatatgttacgctaagcttgggtgatcagattataagaagtaaaaagaacagtcaaactactgttattgggcctcctggtgaaccaatttggaatcaggatttttatatgcttgtagcaaaccctaaaaagcaaaaactatacatccaagtcaaggattctcttggattcacagacttaactattggtacaggagaggttgatcttggatctcttcaagacactgtaccaacagacaggattgtggtactccaaggaggttggggactgtttaataaggggtcttctggtgagatactactacgactgacgtataaagcggttgcttgtagtcgaatttag

Protein Analysis

548

Amino Acids

61.67

Weight (kDa)

9.7

Isoelectric Point (pI)

42.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1340
AarI CACCTGC 1 cut(s) 121
Acc36I ACCTGC 1 cut(s) 121
AccB1I GGYRCC 1 cut(s) 979
AccI GTMKAC 1 cut(s) 841
AciI CCGC 6 cut(s) 75, 258, 520, 554, 1051, 1625
AclWI GGATC 2 cut(s) 1298, 1522
AcoI YGGCCR 1 cut(s) 551
AcsI RAATTY 5 cut(s) 70, 241, 887, 1031, 1641
AcuI CTGAAG 3 cut(s) 90, 296, 677
AcyI GRCGYC 1 cut(s) 980
AfaI GTAC 5 cut(s) 830, 1134, 1495, 1533, 1554
AfiI CCNNNNNNNGG 4 cut(s) 150, 207, 989, 1459
AjnI CCWGG 1 cut(s) 1381
AluBI AGCT 9 cut(s) 110, 385, 397, 570, 643, 949, 995, 1276, 1323
AluI AGCT 9 cut(s) 110, 385, 397, 570, 643, 949, 995, 1276, 1323
Alw21I GWGCWC 1 cut(s) 57
Alw26I GTCTC 1 cut(s) 1018
Alw44I GTGCAC 1 cut(s) 53
AlwI GGATC 2 cut(s) 1298, 1522
AlwNI CAGNNNCTG 1 cut(s) 113
AoxI GGCC 4 cut(s) 255, 551, 1180, 1376
ApaLI GTGCAC 1 cut(s) 53
ApeKI GCWGC 2 cut(s) 40, 110
ApoI RAATTY 5 cut(s) 70, 241, 887, 1031, 1641
AspLEI GCGC 4 cut(s) 156, 304, 860, 982
AspS9I GGNCC 5 cut(s) 255, 498, 536, 1181, 1376
AsuC2I CCSGG 1 cut(s) 664
AsuHPI GGTGA 6 cut(s) 539, 634, 1035, 1340, 1397, 1607
AvaII GGWCC 2 cut(s) 498, 536
BaeGI GKGCMC 2 cut(s) 57, 218
BanI GGYRCC 1 cut(s) 979
BanII GRGCYC 1 cut(s) 100
BbsI GAAGAC 3 cut(s) 372, 451, 1581
Bbv12I GWGCWC 1 cut(s) 57
BbvI GCAGC 2 cut(s) 52, 97
BccI CCATC 2 cut(s) 200, 935
BceAI ACGGC 4 cut(s) 403, 967, 980, 993
BciT130I CCWGG 1 cut(s) 1383
BclI TGATCA 1 cut(s) 1330
BcnI CCSGG 1 cut(s) 664
BcoDI GTCTC 1 cut(s) 1018
BfaI CTAG 3 cut(s) 249, 398, 1122
BfmI CTRYAG 2 cut(s) 824, 1185
BfoI RGCGCY 2 cut(s) 861, 983
BfuAI ACCTGC 1 cut(s) 121
BisI GCNGC 4 cut(s) 41, 111, 258, 554
BlpI GCTNAGC 1 cut(s) 1319
BlsI GCNGC 4 cut(s) 42, 112, 259, 555
Bme1390I CCNGG 2 cut(s) 664, 1383
Bme18I GGWCC 2 cut(s) 498, 536
BmgT120I GGNCC 5 cut(s) 255, 498, 536, 1181, 1376
BmiI GGNNCC 3 cut(s) 343, 609, 981
BmrFI CCNGG 2 cut(s) 664, 1383
BmrI ACTGGG 1 cut(s) 185
BmsI GCATC 2 cut(s) 289, 1255
BmuI ACTGGG 1 cut(s) 185
BpiI GAAGAC 3 cut(s) 372, 451, 1581
Bpu10I CCTNAGC 1 cut(s) 386
Bpu1102I GCTNAGC 1 cut(s) 1319
BpuEI CTTGAG 2 cut(s) 487, 689
BpuMI CCSGG 1 cut(s) 664
BsaAI YACGTR 1 cut(s) 910
BsaHI GRCGYC 1 cut(s) 980
BsaJI CCNNGG 3 cut(s) 539, 983, 1558
Bsc4I CCNNNNNNNGG 4 cut(s) 150, 207, 989, 1459
Bse118I RCCGGY 2 cut(s) 610, 697
Bse1I ACTGG 4 cut(s) 144, 180, 856, 914
BseBI CCWGG 1 cut(s) 1383
BseDI CCNNGG 3 cut(s) 539, 983, 1558
BseGI GGATG 4 cut(s) 304, 325, 803, 1449
BseLI CCNNNNNNNGG 4 cut(s) 150, 207, 989, 1459
BseMII CTCAG 1 cut(s) 407
BseNI ACTGG 4 cut(s) 144, 180, 856, 914
BseSI GKGCMC 2 cut(s) 57, 218
BseXI GCAGC 2 cut(s) 52, 97
BseYI CCCAGC 1 cut(s) 760
BshFI GGCC 4 cut(s) 257, 553, 1182, 1378
BshNI GGYRCC 1 cut(s) 979
BsiHKAI GWGCWC 1 cut(s) 57
BsiSI CCGG 3 cut(s) 611, 663, 698
BslFI GGGAC 3 cut(s) 779, 1223, 1584
BslI CCNNNNNNNGG 4 cut(s) 150, 207, 989, 1459
BsmAI GTCTC 1 cut(s) 1018
BsmFI GGGAC 3 cut(s) 779, 1223, 1584
BsnI GGCC 4 cut(s) 257, 553, 1182, 1378
Bsp1286I GDGCHC 3 cut(s) 57, 100, 218
Bsp143I GATC 7 cut(s) 3, 820, 1026, 1303, 1330, 1507, 1514
Bsp1720I GCTNAGC 1 cut(s) 1319
BspACI CCGC 6 cut(s) 75, 258, 520, 554, 1051, 1625
BspANI GGCC 4 cut(s) 257, 553, 1182, 1378
BspCNI CTCAG 1 cut(s) 406
BspLI GGNNCC 3 cut(s) 343, 609, 981
BspMI ACCTGC 1 cut(s) 121
BspPI GGATC 2 cut(s) 1298, 1522
BspT107I GGYRCC 1 cut(s) 979
BsrFI RCCGGY 2 cut(s) 610, 697
BsrI ACTGG 4 cut(s) 144, 180, 856, 914
BssAI RCCGGY 2 cut(s) 610, 697
BssECI CCNNGG 3 cut(s) 539, 983, 1558
BssMI GATC 7 cut(s) 3, 820, 1026, 1303, 1330, 1507, 1514
BssNI GRCGYC 1 cut(s) 980
BssT1I CCWWGG 1 cut(s) 1558
Bst2UI CCWGG 1 cut(s) 1383
Bst4CI ACNGT 5 cut(s) 828, 1358, 1369, 1531, 1575
Bst6I CTCTTC 1 cut(s) 1524
BstACI GRCGYC 1 cut(s) 980
BstBAI YACGTR 1 cut(s) 910
BstC8I GCNNGC 1 cut(s) 518
BstDEI CTNAG 3 cut(s) 386, 393, 1319
BstDSI CCRYGG 1 cut(s) 983
BstF5I GGATG 4 cut(s) 304, 325, 803, 1449
BstH2I RGCGCY 2 cut(s) 861, 983
BstHHI GCGC 4 cut(s) 156, 304, 860, 982
BstKTI GATC 7 cut(s) 6, 823, 1029, 1306, 1333, 1510, 1517
BstMAI GTCTC 1 cut(s) 1018
BstMBI GATC 7 cut(s) 3, 820, 1026, 1303, 1330, 1507, 1514
BstMWI GCNNNNNNNGC 3 cut(s) 559, 757, 874
BstNI CCWGG 1 cut(s) 1383
BstNSI RCATGY 1 cut(s) 1216
BstSCI CCNGG 2 cut(s) 662, 1381
BstSFI CTRYAG 2 cut(s) 824, 1185
BstSLI GKGCMC 2 cut(s) 57, 218
BstV1I GCAGC 2 cut(s) 52, 97
BstV2I GAAGAC 3 cut(s) 372, 451, 1581
BstX2I RGATCY 2 cut(s) 1303, 1514
BstYI RGATCY 2 cut(s) 1303, 1514
BsuRI GGCC 4 cut(s) 257, 553, 1182, 1378
BtgI CCRYGG 1 cut(s) 983
BtsCI GGATG 4 cut(s) 304, 325, 803, 1449
BtsI GCAGTG 1 cut(s) 55
BtsIMutI CAGTG 4 cut(s) 55, 881, 1257, 1527
BveI ACCTGC 1 cut(s) 121
Cac8I GCNNGC 1 cut(s) 518
CaiI CAGNNNCTG 1 cut(s) 113
CfoI GCGC 4 cut(s) 156, 304, 860, 982
Cfr10I RCCGGY 2 cut(s) 610, 697
Cfr13I GGNCC 5 cut(s) 255, 498, 536, 1181, 1376
Csp6I GTAC 5 cut(s) 829, 1133, 1494, 1532, 1553
CspCI CAANNNNNGTGG 2 cut(s) 505, 540
CviAII CATG 3 cut(s) 63, 628, 1213
CviQI GTAC 5 cut(s) 829, 1133, 1494, 1532, 1553
DdeI CTNAG 3 cut(s) 386, 393, 1319
DinI GGCGCC 1 cut(s) 981
DpnI GATC 7 cut(s) 5, 822, 1028, 1305, 1332, 1509, 1516
DpnII GATC 7 cut(s) 3, 820, 1026, 1303, 1330, 1507, 1514
EaeI YGGCCR 1 cut(s) 551
Eam1104I CTCTTC 1 cut(s) 1524
EarI CTCTTC 1 cut(s) 1524
EciI GGCGGA 1 cut(s) 64
Eco130I CCWWGG 1 cut(s) 1558
Eco24I GRGCYC 1 cut(s) 100
Eco47I GGWCC 2 cut(s) 498, 536
Eco57I CTGAAG 3 cut(s) 90, 296, 677
EcoRII CCWGG 1 cut(s) 1381
EcoT14I CCWWGG 1 cut(s) 1558
EcoT38I GRGCYC 1 cut(s) 100
EgeI GGCGCC 1 cut(s) 981
EheI GGCGCC 1 cut(s) 981
ErhI CCWWGG 1 cut(s) 1558
FaeI CATG 3 cut(s) 66, 631, 1216
FaqI GGGAC 3 cut(s) 779, 1223, 1584
FatI CATG 3 cut(s) 62, 627, 1212
FauI CCCGC 1 cut(s) 513
FauNDI CATATG 1 cut(s) 1309
FbaI TGATCA 1 cut(s) 1330
FblI GTMKAC 1 cut(s) 841
Fnu4HI GCNGC 4 cut(s) 41, 111, 258, 554
FokI GGATG 4 cut(s) 311, 332, 790, 1436
FriOI GRGCYC 1 cut(s) 100
Fsp4HI GCNGC 4 cut(s) 41, 111, 258, 554
FspBI CTAG 3 cut(s) 249, 398, 1122
GlaI GCGC 4 cut(s) 155, 303, 859, 981
GluI GCNGC 4 cut(s) 41, 111, 258, 554
GsaI CCCAGC 1 cut(s) 764
HaeII RGCGCY 2 cut(s) 861, 983
HaeIII GGCC 4 cut(s) 257, 553, 1182, 1378
HapII CCGG 3 cut(s) 611, 663, 698
HhaI GCGC 4 cut(s) 156, 304, 860, 982
Hin1I GRCGYC 1 cut(s) 980
Hin1II CATG 3 cut(s) 66, 631, 1216
Hin6I GCGC 4 cut(s) 154, 302, 858, 980
HinP1I GCGC 4 cut(s) 154, 302, 858, 980
HindIII AAGCTT 3 cut(s) 383, 1274, 1321
HinfI GANTC 7 cut(s) 323, 331, 391, 402, 1399, 1463, 1473
HpaII CCGG 3 cut(s) 611, 663, 698
HphI GGTGA 6 cut(s) 539, 634, 1035, 1340, 1397, 1607
Hpy166II GTNNAC 5 cut(s) 55, 625, 655, 842, 1388
Hpy188I TCNGA 5 cut(s) 319, 429, 540, 1272, 1335
Hpy188III TCNNGA 7 cut(s) 362, 496, 646, 926, 1162, 1403, 1523
Hpy8I GTNNAC 5 cut(s) 55, 625, 655, 842, 1388
Hpy99I CGWCG 2 cut(s) 424, 813
HpyAV CCTTC 6 cut(s) 117, 246, 583, 598, 643, 1214
HpyCH4III ACNGT 5 cut(s) 828, 1358, 1369, 1531, 1575
HpyCH4IV ACGT 3 cut(s) 844, 909, 1616
HpyCH4V TGCA 4 cut(s) 55, 239, 598, 1216
HpyF10VI GCNNNNNNNGC 3 cut(s) 559, 757, 874
HpyF3I CTNAG 3 cut(s) 386, 393, 1319
HpySE526I ACGT 3 cut(s) 844, 909, 1616
Hsp92I GRCGYC 1 cut(s) 980
Hsp92II CATG 3 cut(s) 66, 631, 1216
HspAI GCGC 4 cut(s) 154, 302, 858, 980
KasI GGCGCC 1 cut(s) 979
Ksp22I TGATCA 1 cut(s) 1330
Kzo9I GATC 7 cut(s) 3, 820, 1026, 1303, 1330, 1507, 1514
LmnI GCTCC 2 cut(s) 607, 992
Lsp1109I GCAGC 2 cut(s) 52, 97
LweI GCATC 2 cut(s) 289, 1255
MaeI CTAG 3 cut(s) 249, 398, 1122
MaeII ACGT 3 cut(s) 844, 909, 1616
MaeIII GTNAC 4 cut(s) 324, 1041, 1252, 1312
MalI GATC 7 cut(s) 5, 822, 1028, 1305, 1332, 1509, 1516
MboI GATC 7 cut(s) 3, 820, 1026, 1303, 1330, 1507, 1514
MflI RGATCY 2 cut(s) 1303, 1514
MhlI GDGCHC 3 cut(s) 57, 100, 218
Mly113I GGCGCC 1 cut(s) 980
MlyI GAGTC 3 cut(s) 332, 385, 411
MmeI TCCRAC 1 cut(s) 1219
MseI TTAA 5 cut(s) 378, 872, 1064, 1484, 1578
MslI CAYNNNNRTG 2 cut(s) 221, 908
MspA1I CMGCKG 1 cut(s) 110
MspI CCGG 3 cut(s) 611, 663, 698
MspR9I CCNGG 2 cut(s) 664, 1383
MvaI CCWGG 1 cut(s) 1383
MwoI GCNNNNNNNGC 3 cut(s) 559, 757, 874
NarI GGCGCC 1 cut(s) 980
NciI CCSGG 1 cut(s) 664
NdeI CATATG 1 cut(s) 1309
NdeII GATC 7 cut(s) 3, 820, 1026, 1303, 1330, 1507, 1514
NlaIII CATG 3 cut(s) 66, 631, 1216
NlaIV GGNNCC 3 cut(s) 343, 609, 981
NmuCI GTSAC 3 cut(s) 324, 1041, 1252
NspI RCATGY 1 cut(s) 1216
PaqCI CACCTGC 1 cut(s) 121
PfeI GAWTC 4 cut(s) 331, 1399, 1463, 1473
PkrI GCNGC 4 cut(s) 42, 112, 259, 555
PleI GAGTC 3 cut(s) 331, 385, 410
PluTI GGCGCC 1 cut(s) 983
PpsI GAGTC 3 cut(s) 331, 385, 410
Ppu21I YACGTR 1 cut(s) 910
PsiI TTATAA 1 cut(s) 1340
Psp6I CCWGG 1 cut(s) 1381
PspFI CCCAGC 1 cut(s) 760
PspGI CCWGG 1 cut(s) 1381
PspN4I GGNNCC 3 cut(s) 343, 609, 981
PspPI GGNCC 5 cut(s) 255, 498, 536, 1181, 1376
PstNI CAGNNNCTG 1 cut(s) 113
PsuI RGATCY 2 cut(s) 1303, 1514
PvuII CAGCTG 1 cut(s) 110
RsaI GTAC 5 cut(s) 830, 1134, 1495, 1533, 1554
RsaNI GTAC 5 cut(s) 829, 1133, 1494, 1532, 1553
RseI CAYNNNNRTG 2 cut(s) 221, 908
SaqAI TTAA 5 cut(s) 378, 872, 1064, 1484, 1578
SatI GCNGC 4 cut(s) 41, 111, 258, 554
Sau3AI GATC 7 cut(s) 3, 820, 1026, 1303, 1330, 1507, 1514
Sau96I GGNCC 5 cut(s) 255, 498, 536, 1181, 1376
SchI GAGTC 3 cut(s) 332, 385, 411
ScrFI CCNGG 2 cut(s) 664, 1383
SduI GDGCHC 3 cut(s) 57, 100, 218
SfaNI GCATC 2 cut(s) 289, 1255
SfcI CTRYAG 2 cut(s) 824, 1185
SfoI GGCGCC 1 cut(s) 981
SinI GGWCC 2 cut(s) 498, 536
SmiMI CAYNNNNRTG 2 cut(s) 221, 908
SmlI CTYRAG 2 cut(s) 502, 668
SmoI CTYRAG 2 cut(s) 502, 668
SsiI CCGC 6 cut(s) 75, 258, 520, 554, 1051, 1625
SspDI GGCGCC 1 cut(s) 979
SspMI CTAG 3 cut(s) 249, 398, 1122
StyD4I CCNGG 2 cut(s) 662, 1381
StyI CCWWGG 1 cut(s) 1558
TaaI ACNGT 5 cut(s) 828, 1358, 1369, 1531, 1575
TaiI ACGT 3 cut(s) 847, 912, 1619
TaqI TCGA 5 cut(s) 30, 306, 792, 925, 1639
TauI GCSGC 2 cut(s) 260, 556
TfiI GAWTC 4 cut(s) 331, 1399, 1463, 1473
Tru1I TTAA 5 cut(s) 378, 872, 1064, 1484, 1578
Tru9I TTAA 5 cut(s) 378, 872, 1064, 1484, 1578
TscAI CASTG 4 cut(s) 62, 888, 1257, 1534
TseFI GTSAC 3 cut(s) 324, 1041, 1252
TseI GCWGC 2 cut(s) 40, 110
Tsp45I GTSAC 3 cut(s) 324, 1041, 1252
TspDTI ATGAA 1 cut(s) 239
TspGWI ACGGA 1 cut(s) 4
TspRI CASTG 4 cut(s) 62, 888, 1257, 1534
VneI GTGCAC 1 cut(s) 53
VpaK11BI GGWCC 2 cut(s) 498, 536
XapI RAATTY 5 cut(s) 70, 241, 887, 1031, 1641
XceI RCATGY 1 cut(s) 1216
XcmI CCANNNNNNNNNTGG 1 cut(s) 981
XmiI GTMKAC 1 cut(s) 841
XspI CTAG 3 cut(s) 249, 398, 1122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.