Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005651

Physical Location & Seq

Genomic Coordinates Forward (+)

54254014 .. 54254733

Gene Structure 720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0371300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGGCATCACTCAAGGCTGAGAAACCTGTTGGCACTCAAGCCCCTATAGGACAGCCGAAGAAAGAGCCTGCAGCTCCAAAAGCGAGTGGTACCACGCCCAAAGCTCCAGCCTCCAAAGCCGCCCCAAAGAAGACCGAGACGAAGCCTAAGGAGCCTAGGAAGAAGACTACTGGAAGCAAACCAGCTGCAGCCAAGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044232 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

66

Amino Acids

6.72

Weight (kDa)

10.44

Isoelectric Point (pI)

34.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50260 AT1G50260 AT3G19830 AT3G19830 AT3G19830 AT3G19830
fragaria_vesca	FvH4_4g36720 FvH4_4g36720 FvH4_4g36720 FvH4_4g36720 FvH4_4g36720 FvH4_4g36720
malus_domestica	MD13G1007800.v1.1 MD16G1000300.v1.1
prunus_persica	Prupe.1G345200_v2.0.a1
pyrus_communis	pycom13g00640 pycom16g00490
rosa_chinensis	RchiOBHm_Chr4g0446431
rosa_multiflora	Rmu_sc0008360.1_g000007 Rmu_sc0009970.1_g000002
rosa_roxburghii	Rroxscaffold_5G00386870
rosa_rugosa	Rorug04G0371300 Rorug04G0371400
rosa_samantha	Rh4AG432900 Rh4BG442000 Rh4CG459400 Rh4DG440800
rosa_wichuraiana	Rw4G036980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	89
AccB1I	GGYRCC	1 cut(s)	89
AciI	CCGC	1 cut(s)	120
AfaI	GTAC	1 cut(s)	91
AluBI	AGCT	3 cut(s)	74, 104, 185
AluI	AGCT	3 cut(s)	74, 104, 185
Alw26I	GTCTC	1 cut(s)	131
ApeKI	GCWGC	3 cut(s)	71, 185, 188
Asp718I	GGTACC	1 cut(s)	89
AspA2I	CCTAGG	1 cut(s)	155
AvrII	CCTAGG	1 cut(s)	155
AxyI	CCTNAGG	1 cut(s)	147
BanI	GGYRCC	1 cut(s)	89
BbsI	GAAGAC	2 cut(s)	137, 170
BbvI	GCAGC	2 cut(s)	83, 172
BcoDI	GTCTC	1 cut(s)	131
BfaI	CTAG	1 cut(s)	156
BfmI	CTRYAG	3 cut(s)	45, 69, 186
BisI	GCNGC	4 cut(s)	72, 120, 186, 189
BlnI	CCTAGG	1 cut(s)	155
BlsI	GCNGC	4 cut(s)	73, 121, 187, 190
BmiI	GGNNCC	2 cut(s)	91, 153
BmsI	GCATC	1 cut(s)	14
BpiI	GAAGAC	2 cut(s)	137, 170
BpmI	CTGGAG	1 cut(s)	90
BpuEI	CTTGAG	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	155
Bse1I	ACTGG	1 cut(s)	175
Bse21I	CCTNAGG	1 cut(s)	147
BseDI	CCNNGG	1 cut(s)	155
BseMII	CTCAG	1 cut(s)	9
BseNI	ACTGG	1 cut(s)	175
BseXI	GCAGC	2 cut(s)	83, 172
BshNI	GGYRCC	1 cut(s)	89
BsmAI	GTCTC	1 cut(s)	131
BsmBI	CGTCTC	1 cut(s)	131
BspACI	CCGC	1 cut(s)	120
BspCNI	CTCAG	1 cut(s)	10
BspLI	GGNNCC	2 cut(s)	91, 153
BspMAI	CTGCAG	2 cut(s)	73, 190
BspT107I	GGYRCC	1 cut(s)	89
BsrI	ACTGG	1 cut(s)	175
BssECI	CCNNGG	1 cut(s)	155
BssT1I	CCWWGG	1 cut(s)	155
BstC8I	GCNNGC	1 cut(s)	69
BstDEI	CTNAG	2 cut(s)	18, 147
BstMAI	GTCTC	1 cut(s)	131
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 116, 151
BstSFI	CTRYAG	3 cut(s)	45, 69, 186
BstV1I	GCAGC	2 cut(s)	83, 172
BstV2I	GAAGAC	2 cut(s)	137, 170
Bsu36I	CCTNAGG	1 cut(s)	147
Cac8I	GCNNGC	1 cut(s)	69
Csp6I	GTAC	1 cut(s)	90
CviQI	GTAC	1 cut(s)	90
DdeI	CTNAG	2 cut(s)	18, 147
Eco130I	CCWWGG	1 cut(s)	155
Eco81I	CCTNAGG	1 cut(s)	147
EcoT14I	CCWWGG	1 cut(s)	155
ErhI	CCWWGG	1 cut(s)	155
Esp3I	CGTCTC	1 cut(s)	131
FaiI	YATR	1 cut(s)	47
Fnu4HI	GCNGC	4 cut(s)	72, 120, 186, 189
Fsp4HI	GCNGC	4 cut(s)	72, 120, 186, 189
FspBI	CTAG	1 cut(s)	156
GluI	GCNGC	4 cut(s)	72, 120, 186, 189
GsuI	CTGGAG	1 cut(s)	90
HpyCH4V	TGCA	2 cut(s)	71, 188
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 116, 151
HpyF3I	CTNAG	2 cut(s)	18, 147
KpnI	GGTACC	1 cut(s)	93
LmnI	GCTCC	3 cut(s)	79, 109, 151
LpnPI	CCDG	5 cut(s)	39, 81, 120, 156, 195
Lsp1109I	GCAGC	2 cut(s)	83, 172
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	1 cut(s)	156
MboII	GAAGA	4 cut(s)	70, 142, 172, 175
MluCI	AATT	1 cut(s)	196
MnlI	CCTC	1 cut(s)	121
MseI	TTAA	1 cut(s)	199
MspA1I	CMGCKG	1 cut(s)	185
MwoI	GCNNNNNNNGC	3 cut(s)	80, 116, 151
NlaIV	GGNNCC	2 cut(s)	91, 153
PkrI	GCNGC	4 cut(s)	73, 121, 187, 190
PspN4I	GGNNCC	2 cut(s)	91, 153
PstI	CTGCAG	2 cut(s)	73, 190
PvuII	CAGCTG	1 cut(s)	185
RsaI	GTAC	1 cut(s)	91
RsaNI	GTAC	1 cut(s)	90
SaqAI	TTAA	1 cut(s)	199
SatI	GCNGC	4 cut(s)	72, 120, 186, 189
SetI	ASST	4 cut(s)	28, 76, 106, 187
SfaNI	GCATC	1 cut(s)	14
SfcI	CTRYAG	3 cut(s)	45, 69, 186
SmlI	CTYRAG	2 cut(s)	11, 36
SmoI	CTYRAG	2 cut(s)	11, 36
Sse9I	AATT	1 cut(s)	196
SsiI	CCGC	1 cut(s)	120
SspMI	CTAG	1 cut(s)	156
StyI	CCWWGG	1 cut(s)	155
TaqII	GACCGA	1 cut(s)	149
TasI	AATT	1 cut(s)	196
TauI	GCSGC	1 cut(s)	122
Tru1I	TTAA	1 cut(s)	199
Tru9I	TTAA	1 cut(s)	199
TseI	GCWGC	3 cut(s)	71, 185, 188
XmaJI	CCTAGG	1 cut(s)	155
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.