Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0005651

Physical Location & Seq

Genomic Coordinates Forward (+)

58199032 .. 58203962

Gene Structure 4931 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG442000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1551 bp

ATGATCTTACAATCCGTTTCTGCGAGTTTCGACTTCTCGCAGCCTCTTTTTGTCCACTGCCCATGTGGAAATTTCGCCAATACAAACACCAGTTGGGTTCGTTCTTCAGCTGCTGGAAGAAGAAGGAAGCAGCAGGTACTTATAGCCGGTTTTCGGCGTAAAGGTGTTAGAAGAAAACTGGGTTTGACTGCTTGTGCGATTTCCCCAGATGGGTCGGGGACTAATAATATGAATATAGAGATTGCAAATTCAACTAGAAGGGCCGCCAAGAACTTGGTGCTGAAGCGTTTTTCAAGTGAATTGGATGCGCTCGATGGGTTTTCGGATGAGTCACAGATTCAAATGGGTTCCAATTTCACAAGTTTTCAAGAAGACCCTTTTGTCAATAAGCTTAGGACTCAGCTAGGAGTCATACACCCAATGCCGTCGCCTCCGATCAACCGAAACATTGTGGGGTTGTTTGTCTTCTTCTTTTTTGTTGGGGTTGGGTTTGACAAGTTTTGGACTTCAAGGAAGAAAAGCAAGCGGGGAAGTGAGAATGGTCCGAGGGAGGCGTGGCCGCAAGTGCCTACCAGCTTCTCATTGTTTTTGGAGAAGGATTTGCAGAGGAAGGAGTCGGTGGAATGGGTGAACATGGTTTTGGGGAAGCTCTGGAAGGTTTATAGAGCCGGGCTTGAGAATTGGCTCATTGGGTTGCTTCAGCCGGTCATTGATGATTTGAAGAAGCCTGACTATGTTGAGAGAGTTGAAATCAAGCAGTTTTCGCTGGGGGACGAACCATTGTCTGTTAGGAATGTCGAAAGGAGAACATCCCGTCGTGTCAATGATCTACAGTACCAAATAGGTCTACGTTATACTGGTGGAGCTCGTATGCTGTTAATGCTTACACTGAAATTTGGCATTATTCCCATTTACGTGCCGGTCGGTGTTCGAGATTTTGATATTGATGGAGAGCTTTGGGTCAAATTACGGCTAATACCAACAGCGCCGTGGGTGGGAGCTGTTCAATGGGCTTTTGTCTCACTTCCCAAGATCAAATTTGAATTGTCACCATTCCGCTTGTTCAACTTAATGGCAATCCCTGTTCTATCAATGTTTTTGACTAAACTTCTCACAGAGGATTTACCTAGACTATTTGTACGCCCAAAAAAGAGTGTTTTGGATTTCCAGAAAGTAAAAGCAGTTGGCCCTGTAGGAGATGATTTCAAGTCAGGGGACATGCAAGAAGGAAACAAGGATTTTGTTGGAGAATTATCAGTGACCCTTGTAGATGCTCGGAAGCTTTCCTATGTCTTTTATGGCAAAACAGATCCATATGTTACGCTAAGCTTGGGTGATCAGATTATAAGAAGTAAGAAGAACAGTCAAACTACTGTTATTGGGCCTCCTGGTGAACCAATTTGGAATCAGGATTTTTATATGCTTGTAGCGAACCCTAAAAAGCAAAAACTATACATCCAAGTCAAGGATTCTCTTGGATTCACAGACTTAACTATTGGTACAGGAGAGGTAAAATACCTAATCCATAAAGATATTGAATTGGTTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044232 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

516

Amino Acids

58.46

Weight (kDa)

9.7

Isoelectric Point (pI)

41.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMP_MUG190-like	PF25669	290 - 392	5.4e-11	MUG190-like SMP domain
C2	PF00168	416 - 500	1.1e-10	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50260 AT1G50260 AT3G19830 AT3G19830 AT3G19830 AT3G19830
fragaria_vesca	FvH4_4g36720 FvH4_4g36720 FvH4_4g36720 FvH4_4g36720 FvH4_4g36720 FvH4_4g36720
malus_domestica	MD13G1007800.v1.1 MD16G1000300.v1.1
prunus_persica	Prupe.1G345200_v2.0.a1
pyrus_communis	pycom13g00640 pycom16g00490
rosa_chinensis	RchiOBHm_Chr4g0446431
rosa_multiflora	Rmu_sc0008360.1_g000007 Rmu_sc0009970.1_g000002
rosa_roxburghii	Rroxscaffold_5G00386870
rosa_rugosa	Rorug04G0371300 Rorug04G0371400
rosa_samantha	Rh4AG432900 Rh4BG442000 Rh4CG459400 Rh4DG440800
rosa_wichuraiana	Rw4G036980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1346
AasI	GACNNNNNNGTC	1 cut(s)	380
Acc36I	ACCTGC	1 cut(s)	124
AccI	GTMKAC	1 cut(s)	847
AciI	CCGC	4 cut(s)	264, 526, 560, 1057
AclWI	GGATC	1 cut(s)	1304
AcoI	YGGCCR	1 cut(s)	557
AcsI	RAATTY	4 cut(s)	70, 247, 893, 1037
AcuI	CTGAAG	3 cut(s)	90, 302, 683
AfaI	GTAC	4 cut(s)	138, 836, 1140, 1501
AfiI	CCNNNNNNNGG	4 cut(s)	153, 210, 995, 1465
AjnI	CCWGG	1 cut(s)	1387
AjuI	GAANNNNNNNTTGG	2 cut(s)	623, 655
Alw21I	GWGCWC	1 cut(s)	868
Alw26I	GTCTC	1 cut(s)	1024
AlwI	GGATC	1 cut(s)	1304
AlwNI	CAGNNNCTG	1 cut(s)	113
AoxI	GGCC	4 cut(s)	261, 557, 1186, 1382
ApeKI	GCWGC	3 cut(s)	40, 110, 130
ApoI	RAATTY	4 cut(s)	70, 247, 893, 1037
AspLEI	GCGC	2 cut(s)	310, 988
AspS9I	GGNCC	4 cut(s)	261, 542, 1187, 1382
AsuC2I	CCSGG	1 cut(s)	670
AsuHPI	GGTGA	4 cut(s)	640, 1041, 1346, 1403
AvaII	GGWCC	1 cut(s)	542
BanII	GRGCYC	1 cut(s)	868
BbsI	GAAGAC	2 cut(s)	378, 457
Bbv12I	GWGCWC	1 cut(s)	868
BbvI	GCAGC	3 cut(s)	52, 97, 142
BccI	CCATC	3 cut(s)	203, 308, 941
BceAI	ACGGC	3 cut(s)	409, 973, 986
BciT130I	CCWGG	1 cut(s)	1389
BclI	TGATCA	1 cut(s)	1336
BcnI	CCSGG	1 cut(s)	670
BcoDI	GTCTC	1 cut(s)	1024
BfaI	CTAG	3 cut(s)	255, 404, 1128
BfmI	CTRYAG	2 cut(s)	830, 1191
BfoI	RGCGCY	1 cut(s)	989
BfuAI	ACCTGC	1 cut(s)	124
BisI	GCNGC	5 cut(s)	41, 111, 131, 264, 560
BlpI	GCTNAGC	1 cut(s)	1325
BlsI	GCNGC	5 cut(s)	42, 112, 132, 265, 561
Bme1390I	CCNGG	2 cut(s)	670, 1389
Bme18I	GGWCC	1 cut(s)	542
BmgT120I	GGNCC	4 cut(s)	261, 542, 1187, 1382
BmiI	GGNNCC	1 cut(s)	349
BmrFI	CCNGG	2 cut(s)	670, 1389
BmrI	ACTGGG	1 cut(s)	188
BmsI	GCATC	2 cut(s)	295, 1261
BmuI	ACTGGG	1 cut(s)	188
BpiI	GAAGAC	2 cut(s)	378, 457
Bpu10I	CCTNAGC	1 cut(s)	392
Bpu1102I	GCTNAGC	1 cut(s)	1325
BpuEI	CTTGAG	1 cut(s)	695
BpuMI	CCSGG	1 cut(s)	670
BsaAI	YACGTR	1 cut(s)	916
BsaJI	CCNNGG	2 cut(s)	545, 989
Bsc4I	CCNNNNNNNGG	4 cut(s)	153, 210, 995, 1465
Bse118I	RCCGGY	3 cut(s)	146, 703, 919
Bse1I	ACTGG	3 cut(s)	90, 183, 862
BseBI	CCWGG	1 cut(s)	1389
BseDI	CCNNGG	2 cut(s)	545, 989
BseGI	GGATG	4 cut(s)	310, 331, 809, 1455
BseLI	CCNNNNNNNGG	4 cut(s)	153, 210, 995, 1465
BseMII	CTCAG	1 cut(s)	413
BseNI	ACTGG	3 cut(s)	90, 183, 862
BseXI	GCAGC	3 cut(s)	52, 97, 142
BseYI	CCCAGC	1 cut(s)	766
Bsh1285I	CGRYCG	1 cut(s)	924
BshFI	GGCC	4 cut(s)	263, 559, 1188, 1384
BsiEI	CGRYCG	1 cut(s)	924
BsiHKAI	GWGCWC	1 cut(s)	868
BsiSI	CCGG	4 cut(s)	147, 669, 704, 920
BslFI	GGGAC	3 cut(s)	232, 785, 1229
BslI	CCNNNNNNNGG	4 cut(s)	153, 210, 995, 1465
BsmAI	GTCTC	1 cut(s)	1024
BsmFI	GGGAC	3 cut(s)	232, 785, 1229
BsnI	GGCC	4 cut(s)	263, 559, 1188, 1384
Bsp1286I	GDGCHC	1 cut(s)	868
Bsp143I	GATC	6 cut(s)	3, 435, 826, 1032, 1309, 1336
Bsp1720I	GCTNAGC	1 cut(s)	1325
BspACI	CCGC	4 cut(s)	264, 526, 560, 1057
BspANI	GGCC	4 cut(s)	263, 559, 1188, 1384
BspCNI	CTCAG	1 cut(s)	412
BspLI	GGNNCC	1 cut(s)	349
BspMI	ACCTGC	1 cut(s)	124
BspPI	GGATC	1 cut(s)	1304
BsrFI	RCCGGY	3 cut(s)	146, 703, 919
BsrI	ACTGG	3 cut(s)	90, 183, 862
BssAI	RCCGGY	3 cut(s)	146, 703, 919
BssECI	CCNNGG	2 cut(s)	545, 989
BssMI	GATC	6 cut(s)	3, 435, 826, 1032, 1309, 1336
Bst2UI	CCWGG	1 cut(s)	1389
Bst4CI	ACNGT	3 cut(s)	834, 1364, 1375
BstBAI	YACGTR	1 cut(s)	916
BstC8I	GCNNGC	1 cut(s)	524
BstDEI	CTNAG	3 cut(s)	392, 399, 1325
BstDSI	CCRYGG	1 cut(s)	989
BstF5I	GGATG	4 cut(s)	310, 331, 809, 1455
BstH2I	RGCGCY	1 cut(s)	989
BstHHI	GCGC	2 cut(s)	310, 988
BstKTI	GATC	6 cut(s)	6, 438, 829, 1035, 1312, 1339
BstMAI	GTCTC	1 cut(s)	1024
BstMBI	GATC	6 cut(s)	3, 435, 826, 1032, 1309, 1336
BstMCI	CGRYCG	1 cut(s)	924
BstMWI	GCNNNNNNNGC	3 cut(s)	565, 763, 880
BstNI	CCWGG	1 cut(s)	1389
BstNSI	RCATGY	1 cut(s)	1222
BstSCI	CCNGG	2 cut(s)	668, 1387
BstSFI	CTRYAG	2 cut(s)	830, 1191
BstV1I	GCAGC	3 cut(s)	52, 97, 142
BstV2I	GAAGAC	2 cut(s)	378, 457
BstX2I	RGATCY	1 cut(s)	1309
BstXI	CCANNNNNNTGG	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	1309
BsuRI	GGCC	4 cut(s)	263, 559, 1188, 1384
BtgI	CCRYGG	1 cut(s)	989
BtsCI	GGATG	4 cut(s)	310, 331, 809, 1455
BtsI	GCAGTG	1 cut(s)	55
BtsIMutI	CAGTG	3 cut(s)	55, 887, 1263
BveI	ACCTGC	1 cut(s)	124
Cac8I	GCNNGC	1 cut(s)	524
CaiI	CAGNNNCTG	1 cut(s)	113
CfoI	GCGC	2 cut(s)	310, 988
Cfr10I	RCCGGY	3 cut(s)	146, 703, 919
Cfr13I	GGNCC	4 cut(s)	261, 542, 1187, 1382
Csp6I	GTAC	4 cut(s)	137, 835, 1139, 1500
CviAII	CATG	3 cut(s)	63, 634, 1219
CviQI	GTAC	4 cut(s)	137, 835, 1139, 1500
DdeI	CTNAG	3 cut(s)	392, 399, 1325
DpnI	GATC	6 cut(s)	5, 437, 828, 1034, 1311, 1338
DpnII	GATC	6 cut(s)	3, 435, 826, 1032, 1309, 1336
DrdI	GACNNNNNNGTC	1 cut(s)	380
DseDI	GACNNNNNNGTC	1 cut(s)	380
EaeI	YGGCCR	1 cut(s)	557
Ecl136II	GAGCTC	1 cut(s)	866
Eco24I	GRGCYC	1 cut(s)	868
Eco47I	GGWCC	1 cut(s)	542
Eco53kI	GAGCTC	1 cut(s)	866
Eco57I	CTGAAG	3 cut(s)	90, 302, 683
EcoICRI	GAGCTC	1 cut(s)	866
EcoRII	CCWGG	1 cut(s)	1387
EcoT38I	GRGCYC	1 cut(s)	868
FaeI	CATG	3 cut(s)	66, 637, 1222
FaqI	GGGAC	3 cut(s)	232, 785, 1229
FatI	CATG	3 cut(s)	62, 633, 1218
FauI	CCCGC	1 cut(s)	519
FauNDI	CATATG	1 cut(s)	1315
FbaI	TGATCA	1 cut(s)	1336
FblI	GTMKAC	1 cut(s)	847
Fnu4HI	GCNGC	5 cut(s)	41, 111, 131, 264, 560
FokI	GGATG	4 cut(s)	317, 338, 796, 1442
FriOI	GRGCYC	1 cut(s)	868
Fsp4HI	GCNGC	5 cut(s)	41, 111, 131, 264, 560
FspBI	CTAG	3 cut(s)	255, 404, 1128
GlaI	GCGC	2 cut(s)	309, 987
GluI	GCNGC	5 cut(s)	41, 111, 131, 264, 560
GsaI	CCCAGC	1 cut(s)	770
HaeII	RGCGCY	1 cut(s)	989
HaeIII	GGCC	4 cut(s)	263, 559, 1188, 1384
HapII	CCGG	4 cut(s)	147, 669, 704, 920
HhaI	GCGC	2 cut(s)	310, 988
Hin1II	CATG	3 cut(s)	66, 637, 1222
Hin6I	GCGC	2 cut(s)	308, 986
HinP1I	GCGC	2 cut(s)	308, 986
HindIII	AAGCTT	3 cut(s)	389, 1280, 1327
HinfI	GANTC	8 cut(s)	329, 337, 397, 408, 614, 1405, 1469, 1479
HpaII	CCGG	4 cut(s)	147, 669, 704, 920
HphI	GGTGA	4 cut(s)	640, 1041, 1346, 1403
Hpy166II	GTNNAC	4 cut(s)	55, 631, 848, 1394
Hpy188I	TCNGA	5 cut(s)	325, 435, 546, 1278, 1341
Hpy188III	TCNNGA	5 cut(s)	368, 652, 932, 1168, 1409
Hpy8I	GTNNAC	4 cut(s)	55, 631, 848, 1394
Hpy99I	CGWCG	2 cut(s)	430, 819
HpyAV	CCTTC	6 cut(s)	117, 252, 589, 604, 649, 1220
HpyCH4III	ACNGT	3 cut(s)	834, 1364, 1375
HpyCH4IV	ACGT	2 cut(s)	850, 915
HpyCH4V	TGCA	3 cut(s)	245, 604, 1222
HpyF10VI	GCNNNNNNNGC	3 cut(s)	565, 763, 880
HpyF3I	CTNAG	3 cut(s)	392, 399, 1325
HpySE526I	ACGT	2 cut(s)	850, 915
Hsp92II	CATG	3 cut(s)	66, 637, 1222
HspAI	GCGC	2 cut(s)	308, 986
Ksp22I	TGATCA	1 cut(s)	1336
Kzo9I	GATC	6 cut(s)	3, 435, 826, 1032, 1309, 1336
LmnI	GCTCC	2 cut(s)	863, 998
Lsp1109I	GCAGC	3 cut(s)	52, 97, 142
LweI	GCATC	2 cut(s)	295, 1261
MaeI	CTAG	3 cut(s)	255, 404, 1128
MaeII	ACGT	2 cut(s)	850, 915
MaeIII	GTNAC	4 cut(s)	330, 1047, 1258, 1318
MalI	GATC	6 cut(s)	5, 437, 828, 1034, 1311, 1338
MboI	GATC	6 cut(s)	3, 435, 826, 1032, 1309, 1336
MflI	RGATCY	1 cut(s)	1309
MhlI	GDGCHC	1 cut(s)	868
MlyI	GAGTC	4 cut(s)	338, 391, 417, 623
MmeI	TCCRAC	1 cut(s)	1225
MnlI	CCTC	8 cut(s)	54, 441, 540, 544, 600, 1111, 1395, 1501
MseI	TTAA	3 cut(s)	878, 1070, 1490
MslI	CAYNNNNRTG	1 cut(s)	914
MspA1I	CMGCKG	1 cut(s)	110
MspI	CCGG	4 cut(s)	147, 669, 704, 920
MspR9I	CCNGG	2 cut(s)	670, 1389
MvaI	CCWGG	1 cut(s)	1389
MwoI	GCNNNNNNNGC	3 cut(s)	565, 763, 880
NciI	CCSGG	1 cut(s)	670
NdeI	CATATG	1 cut(s)	1315
NdeII	GATC	6 cut(s)	3, 435, 826, 1032, 1309, 1336
NlaIII	CATG	3 cut(s)	66, 637, 1222
NlaIV	GGNNCC	1 cut(s)	349
NmuCI	GTSAC	3 cut(s)	330, 1047, 1258
NspI	RCATGY	1 cut(s)	1222
PfeI	GAWTC	4 cut(s)	337, 1405, 1469, 1479
PkrI	GCNGC	5 cut(s)	42, 112, 132, 265, 561
PleI	GAGTC	4 cut(s)	337, 391, 416, 622
PpsI	GAGTC	4 cut(s)	337, 391, 416, 622
Ppu21I	YACGTR	1 cut(s)	916
PsiI	TTATAA	1 cut(s)	1346
Psp124BI	GAGCTC	1 cut(s)	868
Psp6I	CCWGG	1 cut(s)	1387
PspFI	CCCAGC	1 cut(s)	766
PspGI	CCWGG	1 cut(s)	1387
PspN4I	GGNNCC	1 cut(s)	349
PspPI	GGNCC	4 cut(s)	261, 542, 1187, 1382
PstNI	CAGNNNCTG	1 cut(s)	113
PsuI	RGATCY	1 cut(s)	1309
PvuII	CAGCTG	1 cut(s)	110
RsaI	GTAC	4 cut(s)	138, 836, 1140, 1501
RsaNI	GTAC	4 cut(s)	137, 835, 1139, 1500
RseI	CAYNNNNRTG	1 cut(s)	914
SacI	GAGCTC	1 cut(s)	868
SaqAI	TTAA	3 cut(s)	878, 1070, 1490
SatI	GCNGC	5 cut(s)	41, 111, 131, 264, 560
Sau3AI	GATC	6 cut(s)	3, 435, 826, 1032, 1309, 1336
Sau96I	GGNCC	4 cut(s)	261, 542, 1187, 1382
SchI	GAGTC	4 cut(s)	338, 391, 417, 623
ScrFI	CCNGG	2 cut(s)	670, 1389
SduI	GDGCHC	1 cut(s)	868
SfaNI	GCATC	2 cut(s)	295, 1261
SfcI	CTRYAG	2 cut(s)	830, 1191
SinI	GGWCC	1 cut(s)	542
SmiMI	CAYNNNNRTG	1 cut(s)	914
SmlI	CTYRAG	1 cut(s)	674
SmoI	CTYRAG	1 cut(s)	674
SsiI	CCGC	4 cut(s)	264, 526, 560, 1057
SspMI	CTAG	3 cut(s)	255, 404, 1128
SstI	GAGCTC	1 cut(s)	868
StyD4I	CCNGG	2 cut(s)	668, 1387
TaaI	ACNGT	3 cut(s)	834, 1364, 1375
TaiI	ACGT	2 cut(s)	853, 918
TaqI	TCGA	4 cut(s)	30, 312, 798, 931
TauI	GCSGC	2 cut(s)	266, 562
TfiI	GAWTC	4 cut(s)	337, 1405, 1469, 1479
Tru1I	TTAA	3 cut(s)	878, 1070, 1490
Tru9I	TTAA	3 cut(s)	878, 1070, 1490
TscAI	CASTG	3 cut(s)	62, 894, 1263
TseFI	GTSAC	3 cut(s)	330, 1047, 1258
TseI	GCWGC	3 cut(s)	40, 110, 130
Tsp45I	GTSAC	3 cut(s)	330, 1047, 1258
TspDTI	ATGAA	1 cut(s)	245
TspGWI	ACGGA	1 cut(s)	4
TspRI	CASTG	3 cut(s)	62, 894, 1263
VpaK11BI	GGWCC	1 cut(s)	542
XapI	RAATTY	4 cut(s)	70, 247, 893, 1037
XceI	RCATGY	1 cut(s)	1222
XcmI	CCANNNNNNNNNTGG	2 cut(s)	62, 987
XmiI	GTMKAC	1 cut(s)	847
XspI	CTAG	3 cut(s)	255, 404, 1128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.