Rw4G036980

Protein kinase C conserved region 2 (CalB)

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
63746547 .. 63751085
4539 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G036980.1

Sequence Viewer

Length: 1629 bp
ATGCCGTCGCCTCCGGTAAACCGAAACATTGTGGGGTTGTTTGTCTTCTTCTTTTTTGTGGGGGTTGGGTTTGACAAGTTTTGGACTTCAAGGAAGAAAAGCAAGCGGGGAGGTGAGAATGGTCCGAGGGAGGCGTGGCCGCAAGTGCCTACCAGCTTCTCGTTGTTTTTGGAGAAGGATTTGCAGAGGAAGGAGTCGGTGGAATGGGTGAACATGGTTCTGGGGAAGCTCTGGAAGGTTTACAGAGCCGGGCTTGAGAATTGGCTCATTGGGTTGCTTCAGCCGGTCATTGATAACTTGAAGAAGCCTGACTATGTTGAGAGAGTTGAAATCAAGCAGTTTTCGCTGGGGGACGAACCATTGTCTGTTAGGAATGTCGAAAGGAGAACATCCCGTCGTGTCAATGATCTACAGTACCAAATAGGTCTACGTTATACTGGCGGAGCTCGTATGCTGTTAATGCTCACACTGAAATTTAGCATTATTCCCATTTACGTGCCAGTCGGTGTTCGAGATTTTGATATTGATGGAGAGCTTTGGGTCAAATTACGGCTAATACCAACAGCGCCGTGGGTGGGAGCTGTTCAATGGGCTTTTGTCTCACTTCCCAAGATCAAATTTGAATTGTCACCATTCCGCTTGTTCAACTTAATGGCAATCCCTGTTCTATCAATGTTTTTGACTAAACTTCTCACAGAGGATTTACCTAGACTATTTGTACGCCCAAAAAAGAGTGTTTTGGATTTCCAGAAAGTAAAAGCAGTTGGCCCTGTAGGTGATGATTTCAAGTCAGGGGACATGCAAGAAGGAAACAAGGATTTTGTTGGAGAATTATCAGTGACCCTTGTAGATGCTCGGAAGCTTTCCTATGTCTTTTATGGCAAAACAGATCCATATGTTACGCTAAGCTTGGGTGATCAGATTATAAGAAGTAAAAAGAACAGTCAAACTACTGTTATTGGGCCTCCTGGTGAACCAATTTGGAATCAGGATTTTTATATGCTTGTAGCAAACCCTAAAAAGCAAAAACTATACATCCAAGTCAAGGATTCTCTTGGATTCACAGACTTAACTATTGGTACAGGAGAGGTTGATCTTGGATCTCTTCAAGACACTGTACCAACAGACAGGATTGTGGTACTCCAAGGAGGTTGGGGACTGTTTAATAAGGGGTCTTCTGGTGAGATACTACTACGACTGACGTATAAAGCGTATGTTGAAGATGAAGAGGATGACAAAACTGCAGCGGATCCTAATGATACTGAAGATGAAGATGATGAGTTGTCTGATTCTGATGAACCAAGTGCTTATGAGAAGGATAAAACGGAGTCTGCAAATGAAACAGACAAAGAGTCCTTTATGGATGTTCTAGCAGCTTTAATCGTGAGTGAGGAATTTCAAGGGATAGTGGCAAGTGAAACAGGAAATACCAAAGTTTCAGACGATTTCTCCAATACAGCTTCAAAAACGTCGAGATTACGTGGTCCTGATGCAGAATCAGTGCCTTCAAATTCTAGTAATAGTTCTGAAGATTCTCGAGGCTCACCCTTATTTTGGCTCGCCGTAATTACCAGCATATCGGTACTAATTGCTATCAACGTCGGTGGTTCAAGTATTTTCAATCCTTGA

Protein Analysis

542

Amino Acids

60.64

Weight (kDa)

5.03

Isoelectric Point (pI)

35.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SMP_MUG190-like PF25669 151 - 252 1.6e-10 MUG190-like SMP domain
C2 PF00168 276 - 373 4.1e-12 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 926
AccI GTMKAC 1 cut(s) 427
AciI CCGC 5 cut(s) 106, 140, 441, 637, 1247
AclWI GGATC 4 cut(s) 884, 1108, 1244, 1257
AcoI YGGCCR 1 cut(s) 137
AcsI RAATTY 4 cut(s) 473, 617, 1394, 1510
AcuI CTGAAG 3 cut(s) 263, 1284, 1548
AfaI GTAC 6 cut(s) 416, 720, 1081, 1119, 1140, 1584
AfiI CCNNNNNNNGG 3 cut(s) 575, 1045, 1554
AhdI GACNNNNNGTC 1 cut(s) 1351
AjnI CCWGG 1 cut(s) 967
AluBI AGCT 9 cut(s) 156, 229, 446, 535, 581, 862, 909, 1376, 1460
AluI AGCT 9 cut(s) 156, 229, 446, 535, 581, 862, 909, 1376, 1460
Alw21I GWGCWC 1 cut(s) 448
Alw26I GTCTC 1 cut(s) 604
AlwI GGATC 4 cut(s) 884, 1108, 1244, 1257
Ama87I CYCGRG 1 cut(s) 1536
AoxI GGCC 3 cut(s) 137, 766, 962
ApeKI GCWGC 2 cut(s) 1244, 1373
ApoI RAATTY 4 cut(s) 473, 617, 1394, 1510
AspLEI GCGC 1 cut(s) 568
AspS9I GGNCC 4 cut(s) 122, 767, 962, 1484
AsuC2I CCSGG 1 cut(s) 250
AsuHPI GGTGA 8 cut(s) 125, 220, 621, 788, 926, 983, 1193, 1536
AvaI CYCGRG 1 cut(s) 1536
AvaII GGWCC 2 cut(s) 122, 1484
BamHI GGATCC 1 cut(s) 1249
BanII GRGCYC 1 cut(s) 448
BbsI GAAGAC 2 cut(s) 37, 1167
Bbv12I GWGCWC 1 cut(s) 448
BbvI GCAGC 2 cut(s) 1256, 1385
BccI CCATC 1 cut(s) 521
BceAI ACGGC 3 cut(s) 553, 566, 1547
BciT130I CCWGG 1 cut(s) 969
BclI TGATCA 1 cut(s) 916
BcnI CCSGG 1 cut(s) 250
BcoDI GTCTC 1 cut(s) 604
BfaI CTAG 3 cut(s) 708, 1370, 1515
BfmI CTRYAG 3 cut(s) 410, 771, 1242
BfoI RGCGCY 1 cut(s) 569
BisI GCNGC 3 cut(s) 140, 1245, 1374
BlpI GCTNAGC 1 cut(s) 905
BlsI GCNGC 3 cut(s) 141, 1246, 1375
Bme1390I CCNGG 2 cut(s) 250, 969
Bme18I GGWCC 2 cut(s) 122, 1484
BmeRI GACNNNNNGTC 1 cut(s) 1351
BmeT110I CYCGRG 1 cut(s) 1536
BmgT120I GGNCC 4 cut(s) 122, 767, 962, 1484
BmiI GGNNCC 1 cut(s) 1251
BmrFI CCNGG 2 cut(s) 250, 969
BmsI GCATC 2 cut(s) 841, 1480
BpiI GAAGAC 2 cut(s) 37, 1167
Bpu1102I GCTNAGC 1 cut(s) 905
BpuEI CTTGAG 1 cut(s) 275
BpuMI CCSGG 1 cut(s) 250
BsaAI YACGTR 2 cut(s) 496, 1481
BsaJI CCNNGG 3 cut(s) 125, 569, 1144
BsaWI WCCGGW 1 cut(s) 13
BsaXI ACNNNNNCTCC 2 cut(s) 1433, 1463
Bsc4I CCNNNNNNNGG 3 cut(s) 575, 1045, 1554
Bse118I RCCGGY 1 cut(s) 283
Bse1I ACTGG 2 cut(s) 442, 500
BseBI CCWGG 1 cut(s) 969
BseDI CCNNGG 3 cut(s) 125, 569, 1144
BseGI GGATG 4 cut(s) 389, 1035, 1237, 1369
BseLI CCNNNNNNNGG 3 cut(s) 575, 1045, 1554
BseNI ACTGG 2 cut(s) 442, 500
BseXI GCAGC 2 cut(s) 1256, 1385
BseYI CCCAGC 1 cut(s) 346
BshFI GGCC 3 cut(s) 139, 768, 964
BsiHKAI GWGCWC 1 cut(s) 448
BsiHKCI CYCGRG 1 cut(s) 1536
BsiSI CCGG 3 cut(s) 14, 249, 284
BslFI GGGAC 3 cut(s) 365, 809, 1170
BslI CCNNNNNNNGG 3 cut(s) 575, 1045, 1554
BsmAI GTCTC 1 cut(s) 604
BsmFI GGGAC 3 cut(s) 365, 809, 1170
BsnI GGCC 3 cut(s) 139, 768, 964
BsoBI CYCGRG 1 cut(s) 1536
Bsp1286I GDGCHC 1 cut(s) 448
Bsp143I GATC 7 cut(s) 406, 612, 889, 916, 1093, 1100, 1249
Bsp1720I GCTNAGC 1 cut(s) 905
BspACI CCGC 5 cut(s) 106, 140, 441, 637, 1247
BspANI GGCC 3 cut(s) 139, 768, 964
BspLI GGNNCC 1 cut(s) 1251
BspMAI CTGCAG 1 cut(s) 1246
BspPI GGATC 4 cut(s) 884, 1108, 1244, 1257
BsrFI RCCGGY 1 cut(s) 283
BsrI ACTGG 2 cut(s) 442, 500
BssAI RCCGGY 1 cut(s) 283
BssECI CCNNGG 3 cut(s) 125, 569, 1144
BssMI GATC 7 cut(s) 406, 612, 889, 916, 1093, 1100, 1249
BssT1I CCWWGG 1 cut(s) 1144
Bst2UI CCWGG 1 cut(s) 969
Bst4CI ACNGT 5 cut(s) 414, 944, 955, 1117, 1161
Bst6I CTCTTC 2 cut(s) 1110, 1221
BstBAI YACGTR 2 cut(s) 496, 1481
BstC8I GCNNGC 2 cut(s) 104, 1560
BstDEI CTNAG 1 cut(s) 905
BstDSI CCRYGG 1 cut(s) 569
BstF5I GGATG 4 cut(s) 389, 1035, 1237, 1369
BstH2I RGCGCY 1 cut(s) 569
BstHHI GCGC 1 cut(s) 568
BstKTI GATC 7 cut(s) 409, 615, 892, 919, 1096, 1103, 1252
BstMAI GTCTC 1 cut(s) 604
BstMBI GATC 7 cut(s) 406, 612, 889, 916, 1093, 1100, 1249
BstMWI GCNNNNNNNGC 3 cut(s) 145, 343, 460
BstNI CCWGG 1 cut(s) 969
BstNSI RCATGY 1 cut(s) 802
BstSCI CCNGG 2 cut(s) 248, 967
BstSFI CTRYAG 3 cut(s) 410, 771, 1242
BstV1I GCAGC 2 cut(s) 1256, 1385
BstV2I GAAGAC 2 cut(s) 37, 1167
BstX2I RGATCY 3 cut(s) 889, 1100, 1249
BstYI RGATCY 3 cut(s) 889, 1100, 1249
BsuRI GGCC 3 cut(s) 139, 768, 964
BtgI CCRYGG 1 cut(s) 569
BtsCI GGATG 4 cut(s) 389, 1035, 1237, 1369
BtsIMutI CAGTG 4 cut(s) 467, 843, 1113, 1506
Cac8I GCNNGC 2 cut(s) 104, 1560
CfoI GCGC 1 cut(s) 568
Cfr10I RCCGGY 1 cut(s) 283
Cfr13I GGNCC 4 cut(s) 122, 767, 962, 1484
Csp6I GTAC 6 cut(s) 415, 719, 1080, 1118, 1139, 1583
CspCI CAANNNNNGTGG 2 cut(s) 1585, 1620
CviAII CATG 2 cut(s) 214, 799
CviQI GTAC 6 cut(s) 415, 719, 1080, 1118, 1139, 1583
DdeI CTNAG 1 cut(s) 905
DpnI GATC 7 cut(s) 408, 614, 891, 918, 1095, 1102, 1251
DpnII GATC 7 cut(s) 406, 612, 889, 916, 1093, 1100, 1249
DriI GACNNNNNGTC 1 cut(s) 1351
EaeI YGGCCR 1 cut(s) 137
Eam1104I CTCTTC 2 cut(s) 1110, 1221
Eam1105I GACNNNNNGTC 1 cut(s) 1351
EarI CTCTTC 2 cut(s) 1110, 1221
EciI GGCGGA 1 cut(s) 456
Ecl136II GAGCTC 1 cut(s) 446
Eco130I CCWWGG 1 cut(s) 1144
Eco24I GRGCYC 1 cut(s) 448
Eco47I GGWCC 2 cut(s) 122, 1484
Eco53kI GAGCTC 1 cut(s) 446
Eco57I CTGAAG 3 cut(s) 263, 1284, 1548
Eco88I CYCGRG 1 cut(s) 1536
EcoICRI GAGCTC 1 cut(s) 446
EcoRII CCWGG 1 cut(s) 967
EcoT14I CCWWGG 1 cut(s) 1144
EcoT38I GRGCYC 1 cut(s) 448
ErhI CCWWGG 1 cut(s) 1144
FaeI CATG 2 cut(s) 217, 802
FaqI GGGAC 3 cut(s) 365, 809, 1170
FatI CATG 2 cut(s) 213, 798
FauI CCCGC 1 cut(s) 99
FauNDI CATATG 1 cut(s) 895
FbaI TGATCA 1 cut(s) 916
FblI GTMKAC 1 cut(s) 427
Fnu4HI GCNGC 3 cut(s) 140, 1245, 1374
FokI GGATG 4 cut(s) 376, 1022, 1244, 1376
FriOI GRGCYC 1 cut(s) 448
Fsp4HI GCNGC 3 cut(s) 140, 1245, 1374
FspBI CTAG 3 cut(s) 708, 1370, 1515
GlaI GCGC 1 cut(s) 567
GluI GCNGC 3 cut(s) 140, 1245, 1374
GsaI CCCAGC 1 cut(s) 350
HaeII RGCGCY 1 cut(s) 569
HaeIII GGCC 3 cut(s) 139, 768, 964
HapII CCGG 3 cut(s) 14, 249, 284
HhaI GCGC 1 cut(s) 568
Hin1II CATG 2 cut(s) 217, 802
Hin6I GCGC 1 cut(s) 566
HinP1I GCGC 1 cut(s) 566
HindIII AAGCTT 2 cut(s) 860, 907
HinfI GANTC 9 cut(s) 194, 985, 1049, 1059, 1289, 1328, 1352, 1496, 1532
HpaII CCGG 3 cut(s) 14, 249, 284
HphI GGTGA 8 cut(s) 125, 220, 621, 788, 926, 983, 1193, 1536
Hpy166II GTNNAC 5 cut(s) 19, 211, 241, 428, 974
Hpy188I TCNGA 7 cut(s) 126, 858, 921, 1288, 1294, 1441, 1528
Hpy188III TCNNGA 9 cut(s) 232, 512, 748, 989, 1109, 1384, 1473, 1487, 1536
Hpy8I GTNNAC 5 cut(s) 19, 211, 241, 428, 974
Hpy99I CGWCG 4 cut(s) 10, 399, 1474, 1604
HpyAV CCTTC 6 cut(s) 169, 184, 229, 800, 1309, 1515
HpyCH4III ACNGT 5 cut(s) 414, 944, 955, 1117, 1161
HpyCH4IV ACGT 6 cut(s) 430, 495, 1202, 1469, 1480, 1599
HpyCH4V TGCA 5 cut(s) 184, 802, 1244, 1334, 1493
HpyF10VI GCNNNNNNNGC 3 cut(s) 145, 343, 460
HpyF3I CTNAG 1 cut(s) 905
HpySE526I ACGT 6 cut(s) 430, 495, 1202, 1469, 1480, 1599
Hsp92II CATG 2 cut(s) 217, 802
HspAI GCGC 1 cut(s) 566
Ksp22I TGATCA 1 cut(s) 916
Kzo9I GATC 7 cut(s) 406, 612, 889, 916, 1093, 1100, 1249
LmnI GCTCC 2 cut(s) 443, 578
Lsp1109I GCAGC 2 cut(s) 1256, 1385
LweI GCATC 2 cut(s) 841, 1480
MaeI CTAG 3 cut(s) 708, 1370, 1515
MaeII ACGT 6 cut(s) 430, 495, 1202, 1469, 1480, 1599
MaeIII GTNAC 3 cut(s) 627, 838, 898
MalI GATC 7 cut(s) 408, 614, 891, 918, 1095, 1102, 1251
MboI GATC 7 cut(s) 406, 612, 889, 916, 1093, 1100, 1249
MflI RGATCY 3 cut(s) 889, 1100, 1249
MhlI GDGCHC 1 cut(s) 448
MlyI GAGTC 3 cut(s) 203, 1337, 1361
MmeI TCCRAC 1 cut(s) 805
MseI TTAA 5 cut(s) 458, 650, 1070, 1164, 1379
MslI CAYNNNNRTG 1 cut(s) 494
MspA1I CMGCKG 1 cut(s) 1247
MspI CCGG 3 cut(s) 14, 249, 284
MspR9I CCNGG 2 cut(s) 250, 969
MvaI CCWGG 1 cut(s) 969
MwoI GCNNNNNNNGC 3 cut(s) 145, 343, 460
NciI CCSGG 1 cut(s) 250
NdeI CATATG 1 cut(s) 895
NdeII GATC 7 cut(s) 406, 612, 889, 916, 1093, 1100, 1249
NlaIII CATG 2 cut(s) 217, 802
NlaIV GGNNCC 1 cut(s) 1251
NmuCI GTSAC 2 cut(s) 627, 838
NspI RCATGY 1 cut(s) 802
PaeR7I CTCGAG 1 cut(s) 1536
PcsI WCGNNNNNNNCGW 1 cut(s) 1208
PfeI GAWTC 6 cut(s) 985, 1049, 1059, 1289, 1496, 1532
PkrI GCNGC 3 cut(s) 141, 1246, 1375
PleI GAGTC 3 cut(s) 202, 1336, 1360
PpsI GAGTC 3 cut(s) 202, 1336, 1360
Ppu21I YACGTR 2 cut(s) 496, 1481
PsiI TTATAA 1 cut(s) 926
Psp124BI GAGCTC 1 cut(s) 448
Psp6I CCWGG 1 cut(s) 967
PspFI CCCAGC 1 cut(s) 346
PspGI CCWGG 1 cut(s) 967
PspN4I GGNNCC 1 cut(s) 1251
PspPI GGNCC 4 cut(s) 122, 767, 962, 1484
PstI CTGCAG 1 cut(s) 1246
PsuI RGATCY 3 cut(s) 889, 1100, 1249
RsaI GTAC 6 cut(s) 416, 720, 1081, 1119, 1140, 1584
RsaNI GTAC 6 cut(s) 415, 719, 1080, 1118, 1139, 1583
RseI CAYNNNNRTG 1 cut(s) 494
SacI GAGCTC 1 cut(s) 448
SaqAI TTAA 5 cut(s) 458, 650, 1070, 1164, 1379
SatI GCNGC 3 cut(s) 140, 1245, 1374
Sau3AI GATC 7 cut(s) 406, 612, 889, 916, 1093, 1100, 1249
Sau96I GGNCC 4 cut(s) 122, 767, 962, 1484
SchI GAGTC 3 cut(s) 203, 1337, 1361
ScrFI CCNGG 2 cut(s) 250, 969
SduI GDGCHC 1 cut(s) 448
SfaNI GCATC 2 cut(s) 841, 1480
SfcI CTRYAG 3 cut(s) 410, 771, 1242
Sfr274I CTCGAG 1 cut(s) 1536
SinI GGWCC 2 cut(s) 122, 1484
SlaI CTCGAG 1 cut(s) 1536
SmiMI CAYNNNNRTG 1 cut(s) 494
SmlI CTYRAG 2 cut(s) 254, 1536
SmoI CTYRAG 2 cut(s) 254, 1536
SsiI CCGC 5 cut(s) 106, 140, 441, 637, 1247
SspMI CTAG 3 cut(s) 708, 1370, 1515
SstI GAGCTC 1 cut(s) 448
StyD4I CCNGG 2 cut(s) 248, 967
StyI CCWWGG 1 cut(s) 1144
TaaI ACNGT 5 cut(s) 414, 944, 955, 1117, 1161
TaiI ACGT 6 cut(s) 433, 498, 1205, 1472, 1483, 1602
TaqI TCGA 4 cut(s) 378, 511, 1472, 1537
TauI GCSGC 1 cut(s) 142
TfiI GAWTC 6 cut(s) 985, 1049, 1059, 1289, 1496, 1532
Tru1I TTAA 5 cut(s) 458, 650, 1070, 1164, 1379
Tru9I TTAA 5 cut(s) 458, 650, 1070, 1164, 1379
TscAI CASTG 4 cut(s) 474, 843, 1120, 1506
TseFI GTSAC 2 cut(s) 627, 838
TseI GCWGC 2 cut(s) 1244, 1373
Tsp45I GTSAC 2 cut(s) 627, 838
TspDTI ATGAA 4 cut(s) 1239, 1284, 1311, 1353
TspGWI ACGGA 1 cut(s) 1340
TspRI CASTG 4 cut(s) 474, 843, 1120, 1506
VpaK11BI GGWCC 2 cut(s) 122, 1484
XapI RAATTY 4 cut(s) 473, 617, 1394, 1510
XceI RCATGY 1 cut(s) 802
XcmI CCANNNNNNNNNTGG 1 cut(s) 567
XhoI CTCGAG 1 cut(s) 1536
XmiI GTMKAC 1 cut(s) 427
XspI CTAG 3 cut(s) 708, 1370, 1515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.