Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008750.1

Orthogroup ID

OG0004947

Physical Location & Seq

Genomic Coordinates Reverse (-)

29863 .. 32384

Gene Structure 2522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008750.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

atgctcaaacacaatcgtcttcctcttccctcagtacagtggaccaccactggtgtcataatcctagctctgatctgttgcccagttgtgatttcaccagttaaaattgtgtgctgggttagagttggtcaattctcgcctcttaaatgtgcatttgagttgtttgactccaccttcttcaatgatacagagatgctggaaattgtgaagggagataaggagttaaacacccctataatcagagctaacagagagttagttgcttcagtgaatggagggctgagtgacccgtcttatttggtgtttaattctgggtgggggaaagaacaagcacaaaatgttactagaagattcagttatccttctctttccggcatacagaaacccagaagtgaagaagacattgccttcctgactattcctgaattaggacaactcattaggacaaagcaaattacatccaaggagcttactgcaatttttctgaaaagacttaaaaggtataatcatgttcttgaggcagtggtgacttatactgaagaattagcatacgagcaagcaaaagaggctgatgatctgcttgcacaaggagtttatttgggtcctctccatgggattccctatggtttgaaggatataattgcagtaccccactacagaacaacttggggttccagaagtttcaaacatcaagttcttaacattgaagcttgggtttacaagaggttgaagtctgctggggcagttcttgtcgcgaagcttgtttcagggtcattggcatacgatgacatctggtttggcggtagaacaaggaatccatggaatattgaggagttctctactggttcatcagctggacctgctgcctccacctcagcaggtatggtgccatttgcaattggatcagaaacagctggctctgtgacctaccctgctgcgcgctgtggagtgacagcattgcgcccaacattcggcactactggccgaactggtgtaatgagcatatcagaaagcttggataagctcggtcctttctgtagaagtgccacagattgtgcaattattctggatgctattagaggaaaggacccggatgatctttcatcaagagacattccctttgatgatccattttcagttgacatcactaaactcactgttggatatctagaagatgccgagatggaggttgttcatgttctagccgcgaaaggtgtaaaaatgattccttttaaactaaattacacggttgattctgttcaagggattctgaactttaccatggacgtcgatatgttggctcactttgacgagtggcagcgatcggggcaggatgaggattatgaagctcaagaacagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Amidase

Protein Analysis

453

Amino Acids

50.05

Weight (kDa)

5.44

Isoelectric Point (pI)

36.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07360 AT5G07360 AT5G07360
fragaria_vesca	FvH4_5g09970 FvH4_5g09970 FvH4_5g09970 FvH4_5g09971
malus_domestica	MD00G1076500.v1.1 MD00G1076700.v1.1 MD14G1144500.v1.1
prunus_persica	Prupe.5G138700_v2.0.a1 Prupe.5G138700_v2.0.a1 Prupe.5G138700_v2.0.a1 Prupe.5G138700_v2.0.a1
pyrus_communis	pycom06g11910
rosa_chinensis	RchiOBHm_Chr7g0188291 RchiOBHm_Chr7g0188311
rosa_laevigata	RLG00000004709 RLG00000004710
rosa_multiflora	Rmu_sc0008750.1_g000007
rosa_roxburghii	Rroxscaffold_3G00266520
rosa_rugosa	Rorug06G0489800
rosa_samantha	Rh7AG094200 Rh7AG094300 Rh7BG095800 Rh7BG095900 Rh7CG096000 Rh7DG096200
rosa_wichuraiana	Rw7G008120 Rw7G008130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1290
Acc36I	ACCTGC	2 cut(s)	868, 869
AccB1I	GGYRCC	1 cut(s)	886
AccII	CGCG	3 cut(s)	755, 940, 1208
AciI	CCGC	2 cut(s)	801, 1206
AclWI	GGATC	2 cut(s)	910, 1121
AcoI	YGGCCR	1 cut(s)	982
AcuI	CTGAAG	2 cut(s)	249, 558
AcyI	GRCGYC	1 cut(s)	1287
AfaI	GTAC	2 cut(s)	36, 648
AfiI	CCNNNNNNNGG	3 cut(s)	428, 611, 971
AgsI	TTSAA	6 cut(s)	181, 631, 685, 707, 730, 1262
AloI	GAACNNNNNNTCC	2 cut(s)	799, 831
Alw26I	GTCTC	1 cut(s)	1104
AlwI	GGATC	2 cut(s)	910, 1121
AoxI	GGCC	1 cut(s)	982
ApeKI	GCWGC	3 cut(s)	863, 935, 1318
ArsI	GACNNNNNNTTYG	4 cut(s)	779, 811, 1103, 1135
AspLEI	GCGC	3 cut(s)	940, 942, 963
AspS9I	GGNCC	5 cut(s)	42, 602, 857, 1028, 1087
AsuC2I	CCSGG	1 cut(s)	1091
AsuHPI	GGTGA	2 cut(s)	87, 538
AvaII	GGWCC	5 cut(s)	42, 602, 857, 1028, 1087
BanI	GGYRCC	1 cut(s)	886
BbsI	GAAGAC	2 cut(s)	11, 405
BbvCI	CCTCAGC	1 cut(s)	874
BbvI	GCAGC	3 cut(s)	850, 922, 1330
BccI	CCATC	1 cut(s)	1177
BcnI	CCSGG	1 cut(s)	1091
BcoDI	GTCTC	1 cut(s)	1104
BfaI	CTAG	4 cut(s)	65, 345, 1169, 1202
BfmI	CTRYAG	2 cut(s)	655, 1036
BfuAI	ACCTGC	2 cut(s)	868, 869
BisI	GCNGC	4 cut(s)	864, 936, 1206, 1319
BlsI	GCNGC	4 cut(s)	865, 937, 1207, 1320
Bme1390I	CCNGG	1 cut(s)	1091
Bme18I	GGWCC	5 cut(s)	42, 602, 857, 1028, 1087
BmgT120I	GGNCC	5 cut(s)	42, 602, 857, 1028, 1087
BmiI	GGNNCC	4 cut(s)	603, 673, 888, 1089
BmrFI	CCNGG	1 cut(s)	1091
BmrI	ACTGGG	1 cut(s)	77
BmsI	GCATC	3 cut(s)	183, 1060, 1165
BmuI	ACTGGG	1 cut(s)	77
BpiI	GAAGAC	2 cut(s)	11, 405
BplI	GAGNNNNNCTC	2 cut(s)	821, 853
Bpu10I	CCTNAGC	1 cut(s)	874
BpuEI	CTTGAG	2 cut(s)	536, 1335
BpuMI	CCSGG	1 cut(s)	1091
BsaHI	GRCGYC	1 cut(s)	1287
BsaJI	CCNNGG	4 cut(s)	462, 610, 818, 1281
Bsc4I	CCNNNNNNNGG	3 cut(s)	428, 611, 971
Bse1I	ACTGG	6 cut(s)	55, 83, 98, 847, 985, 994
Bse3DI	GCAATG	2 cut(s)	402, 956
BseDI	CCNNGG	4 cut(s)	462, 610, 818, 1281
BseGI	GGATG	4 cut(s)	458, 1075, 1099, 1339
BseLI	CCNNNNNNNGG	3 cut(s)	428, 611, 971
BseMI	GCAATG	2 cut(s)	402, 956
BseMII	CTCAG	3 cut(s)	45, 272, 888
BseNI	ACTGG	6 cut(s)	55, 83, 98, 847, 985, 994
BsePI	GCGCGC	1 cut(s)	938
BseRI	GAGGAG	1 cut(s)	845
BseXI	GCAGC	3 cut(s)	850, 922, 1330
BseYI	CCCAGC	2 cut(s)	114, 737
Bsh1236I	CGCG	3 cut(s)	755, 940, 1208
Bsh1285I	CGRYCG	1 cut(s)	1325
BshFI	GGCC	1 cut(s)	984
BshNI	GGYRCC	1 cut(s)	886
BsiEI	CGRYCG	1 cut(s)	1325
BsiSI	CCGG	2 cut(s)	372, 1091
BslI	CCNNNNNNNGG	3 cut(s)	428, 611, 971
BsmAI	GTCTC	1 cut(s)	1104
BsnI	GGCC	1 cut(s)	984
Bsp143I	GATC	6 cut(s)	72, 574, 902, 1096, 1126, 1322
Bsp19I	CCATGG	3 cut(s)	610, 818, 1281
Bsp68I	TCGCGA	1 cut(s)	755
BspACI	CCGC	2 cut(s)	801, 1206
BspANI	GGCC	1 cut(s)	984
BspCNI	CTCAG	3 cut(s)	44, 273, 887
BspFNI	CGCG	3 cut(s)	755, 940, 1208
BspLI	GGNNCC	4 cut(s)	603, 673, 888, 1089
BspMI	ACCTGC	2 cut(s)	868, 869
BspPI	GGATC	2 cut(s)	910, 1121
BspT107I	GGYRCC	1 cut(s)	886
BsrDI	GCAATG	2 cut(s)	402, 956
BsrI	ACTGG	6 cut(s)	55, 83, 98, 847, 985, 994
BssECI	CCNNGG	4 cut(s)	462, 610, 818, 1281
BssHII	GCGCGC	1 cut(s)	938
BssMI	GATC	6 cut(s)	72, 574, 902, 1096, 1126, 1322
BssNI	GRCGYC	1 cut(s)	1287
BssT1I	CCWWGG	4 cut(s)	462, 610, 818, 1281
Bst4CI	ACNGT	4 cut(s)	39, 1159, 1249, 1359
Bst6I	CTCTTC	1 cut(s)	30
BstACI	GRCGYC	1 cut(s)	1287
BstC8I	GCNNGC	4 cut(s)	558, 582, 916, 940
BstDEI	CTNAG	3 cut(s)	31, 281, 874
BstDSI	CCRYGG	3 cut(s)	610, 818, 1281
BstENI	CCTNNNNNAGG	1 cut(s)	426
BstF5I	GGATG	4 cut(s)	458, 1075, 1099, 1339
BstFNI	CGCG	3 cut(s)	755, 940, 1208
BstHHI	GCGC	3 cut(s)	940, 942, 963
BstKTI	GATC	6 cut(s)	75, 577, 905, 1099, 1129, 1325
BstMAI	GTCTC	1 cut(s)	1104
BstMBI	GATC	6 cut(s)	72, 574, 902, 1096, 1126, 1322
BstMCI	CGRYCG	1 cut(s)	1325
BstMWI	GCNNNNNNNGC	4 cut(s)	566, 860, 981, 1327
BstSCI	CCNGG	1 cut(s)	1089
BstSFI	CTRYAG	2 cut(s)	655, 1036
BstUI	CGCG	3 cut(s)	755, 940, 1208
BstV1I	GCAGC	3 cut(s)	850, 922, 1330
BstV2I	GAAGAC	2 cut(s)	11, 405
BsuRI	GGCC	1 cut(s)	984
BtgI	CCRYGG	3 cut(s)	610, 818, 1281
BtsCI	GGATG	4 cut(s)	458, 1075, 1099, 1339
BtsI	GCAGTG	1 cut(s)	528
BtsIMutI	CAGTG	5 cut(s)	44, 48, 273, 528, 1155
BtuMI	TCGCGA	1 cut(s)	755
BveI	ACCTGC	2 cut(s)	868, 869
Cac8I	GCNNGC	4 cut(s)	558, 582, 916, 940
CfoI	GCGC	3 cut(s)	940, 942, 963
Cfr13I	GGNCC	5 cut(s)	42, 602, 857, 1028, 1087
Csp6I	GTAC	2 cut(s)	35, 647
CviAII	CATG	5 cut(s)	509, 611, 819, 1196, 1282
CviQI	GTAC	2 cut(s)	35, 647
DdeI	CTNAG	3 cut(s)	31, 281, 874
DpnI	GATC	6 cut(s)	74, 576, 904, 1098, 1128, 1324
DpnII	GATC	6 cut(s)	72, 574, 902, 1096, 1126, 1322
DraI	TTTAAA	1 cut(s)	1234
EaeI	YGGCCR	1 cut(s)	982
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Eco130I	CCWWGG	4 cut(s)	462, 610, 818, 1281
Eco32I	GATATC	1 cut(s)	1166
Eco47I	GGWCC	5 cut(s)	42, 602, 857, 1028, 1087
Eco57I	CTGAAG	2 cut(s)	249, 558
EcoNI	CCTNNNNNAGG	1 cut(s)	426
EcoO109I	RGGNCCY	2 cut(s)	602, 1087
EcoRV	GATATC	1 cut(s)	1166
EcoT14I	CCWWGG	4 cut(s)	462, 610, 818, 1281
ErhI	CCWWGG	4 cut(s)	462, 610, 818, 1281
FaeI	CATG	5 cut(s)	512, 614, 822, 1199, 1285
FatI	CATG	5 cut(s)	508, 610, 818, 1195, 1281
Fnu4HI	GCNGC	4 cut(s)	864, 936, 1206, 1319
FokI	GGATG	4 cut(s)	445, 1082, 1106, 1346
Fsp4HI	GCNGC	4 cut(s)	864, 936, 1206, 1319
FspBI	CTAG	4 cut(s)	65, 345, 1169, 1202
GlaI	GCGC	3 cut(s)	939, 941, 962
GluI	GCNGC	4 cut(s)	864, 936, 1206, 1319
GsaI	CCCAGC	2 cut(s)	118, 741
HaeIII	GGCC	1 cut(s)	984
HapII	CCGG	2 cut(s)	372, 1091
HhaI	GCGC	3 cut(s)	940, 942, 963
Hin1I	GRCGYC	1 cut(s)	1287
Hin1II	CATG	5 cut(s)	512, 614, 822, 1199, 1285
Hin6I	GCGC	3 cut(s)	938, 940, 961
HinP1I	GCGC	3 cut(s)	938, 940, 961
HincII	GTYRAC	1 cut(s)	1141
HindII	GTYRAC	1 cut(s)	1141
HindIII	AAGCTT	3 cut(s)	708, 758, 1012
HinfI	GANTC	7 cut(s)	167, 351, 616, 814, 1225, 1253, 1267
HpaII	CCGG	2 cut(s)	372, 1091
HphI	GGTGA	2 cut(s)	87, 538
Hpy166II	GTNNAC	3 cut(s)	42, 718, 1141
Hpy188I	TCNGA	6 cut(s)	72, 242, 486, 907, 1009, 1272
Hpy188III	TCNNGA	9 cut(s)	412, 422, 515, 675, 754, 1067, 1107, 1169, 1352
Hpy8I	GTNNAC	3 cut(s)	42, 718, 1141
Hpy99I	CGWCG	1 cut(s)	1292
HpyAV	CCTTC	5 cut(s)	184, 202, 372, 418, 625
HpyCH4III	ACNGT	4 cut(s)	39, 1159, 1249, 1359
HpyCH4IV	ACGT	1 cut(s)	1287
HpyCH4V	TGCA	6 cut(s)	152, 476, 584, 644, 896, 1058
HpyF10VI	GCNNNNNNNGC	4 cut(s)	566, 860, 981, 1327
HpyF3I	CTNAG	3 cut(s)	31, 281, 874
HpySE526I	ACGT	1 cut(s)	1287
Hsp92I	GRCGYC	1 cut(s)	1287
Hsp92II	CATG	5 cut(s)	512, 614, 822, 1199, 1285
HspAI	GCGC	3 cut(s)	938, 940, 961
Kzo9I	GATC	6 cut(s)	72, 574, 902, 1096, 1126, 1322
LmnI	GCTCC	1 cut(s)	466
Lsp1109I	GCAGC	3 cut(s)	850, 922, 1330
LweI	GCATC	3 cut(s)	183, 1060, 1165
MaeI	CTAG	4 cut(s)	65, 345, 1169, 1202
MaeII	ACGT	1 cut(s)	1287
MaeIII	GTNAC	5 cut(s)	284, 340, 526, 922, 949
MalI	GATC	6 cut(s)	74, 576, 904, 1098, 1128, 1324
MboI	GATC	6 cut(s)	72, 574, 902, 1096, 1126, 1322
MboII	GAAGA	8 cut(s)	11, 17, 169, 360, 407, 410, 551, 1184
MfeI	CAATTG	1 cut(s)	897
MlyI	GAGTC	1 cut(s)	161
MmeI	TCCRAC	1 cut(s)	1141
MseI	TTAA	7 cut(s)	102, 144, 224, 306, 495, 699, 1233
MspA1I	CMGCKG	2 cut(s)	854, 914
MspI	CCGG	2 cut(s)	372, 1091
MspR9I	CCNGG	1 cut(s)	1091
MunI	CAATTG	1 cut(s)	897
MvnI	CGCG	3 cut(s)	755, 940, 1208
MwoI	GCNNNNNNNGC	4 cut(s)	566, 860, 981, 1327
NciI	CCSGG	1 cut(s)	1091
NcoI	CCATGG	3 cut(s)	610, 818, 1281
NdeII	GATC	6 cut(s)	72, 574, 902, 1096, 1126, 1322
NlaIII	CATG	5 cut(s)	512, 614, 822, 1199, 1285
NlaIV	GGNNCC	4 cut(s)	603, 673, 888, 1089
NmeAIII	GCCGAG	1 cut(s)	1204
NmuCI	GTSAC	4 cut(s)	284, 526, 922, 949
NruI	TCGCGA	1 cut(s)	755
PauI	GCGCGC	1 cut(s)	938
PfeI	GAWTC	6 cut(s)	351, 616, 814, 1225, 1253, 1267
PkrI	GCNGC	4 cut(s)	865, 937, 1207, 1320
Ple19I	CGATCG	1 cut(s)	1325
PleI	GAGTC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	161
PpuMI	RGGWCCY	2 cut(s)	602, 1087
Psp5II	RGGWCCY	2 cut(s)	602, 1087
PspFI	CCCAGC	2 cut(s)	114, 737
PspN4I	GGNNCC	4 cut(s)	603, 673, 888, 1089
PspPI	GGNCC	5 cut(s)	42, 602, 857, 1028, 1087
PspPPI	RGGWCCY	2 cut(s)	602, 1087
PteI	GCGCGC	1 cut(s)	938
PvuI	CGATCG	1 cut(s)	1325
PvuII	CAGCTG	2 cut(s)	854, 914
RruI	TCGCGA	1 cut(s)	755
RsaI	GTAC	2 cut(s)	36, 648
RsaNI	GTAC	2 cut(s)	35, 647
SaqAI	TTAA	7 cut(s)	102, 144, 224, 306, 495, 699, 1233
SatI	GCNGC	4 cut(s)	864, 936, 1206, 1319
Sau3AI	GATC	6 cut(s)	72, 574, 902, 1096, 1126, 1322
Sau96I	GGNCC	5 cut(s)	42, 602, 857, 1028, 1087
SchI	GAGTC	1 cut(s)	161
ScrFI	CCNGG	1 cut(s)	1091
SfaNI	GCATC	3 cut(s)	183, 1060, 1165
SfcI	CTRYAG	2 cut(s)	655, 1036
SinI	GGWCC	5 cut(s)	42, 602, 857, 1028, 1087
SmlI	CTYRAG	2 cut(s)	515, 1350
SmoI	CTYRAG	2 cut(s)	515, 1350
SsiI	CCGC	2 cut(s)	801, 1206
SspI	AATATT	1 cut(s)	826
SspMI	CTAG	4 cut(s)	65, 345, 1169, 1202
StyD4I	CCNGG	1 cut(s)	1089
StyI	CCWWGG	4 cut(s)	462, 610, 818, 1281
TaaI	ACNGT	4 cut(s)	39, 1159, 1249, 1359
TaiI	ACGT	1 cut(s)	1290
TaqI	TCGA	1 cut(s)	1290
TaqII	GACCGA	1 cut(s)	1016
TatI	WGTACW	1 cut(s)	34
TauI	GCSGC	1 cut(s)	1208
TfiI	GAWTC	6 cut(s)	351, 616, 814, 1225, 1253, 1267
Tru1I	TTAA	7 cut(s)	102, 144, 224, 306, 495, 699, 1233
Tru9I	TTAA	7 cut(s)	102, 144, 224, 306, 495, 699, 1233
TscAI	CASTG	5 cut(s)	44, 55, 273, 528, 1162
TseFI	GTSAC	4 cut(s)	284, 526, 922, 949
TseI	GCWGC	3 cut(s)	863, 935, 1318
Tsp45I	GTSAC	4 cut(s)	284, 526, 922, 949
TspDTI	ATGAA	4 cut(s)	837, 1092, 1184, 1359
TspRI	CASTG	5 cut(s)	44, 55, 273, 528, 1162
VpaK11BI	GGWCC	5 cut(s)	42, 602, 857, 1028, 1087
XagI	CCTNNNNNAGG	1 cut(s)	426
XbaI	TCTAGA	1 cut(s)	1168
XspI	CTAG	4 cut(s)	65, 345, 1169, 1202
ZraI	GACGTC	1 cut(s)	1288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.