Rmu_sc0008911.1_g000004

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008911.1
Physical Location & Seq
Forward (+)
19038 .. 20135
1098 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008911.1_g000004.1.cds

Sequence Viewer

Length: 1098 bp
atggccgaaactccatctcagtcgccgccgccgcgatccgtctccgacacggagaccgagacggaggcgcagccgcaggagtactggtgctaccactgcaacaagcgcgtctccgtcgagacggtcgcaaacctcccggacatcgtctgccacgactgcaagaacgggttcgtggaatcgattccaccgtcggatcatcctctttcccggccgtccgatcaggcggacgacccgaccttcggctccccgttcctccaggtgctccggctgatcgcgcaggcggcgcgtgaggaggacgcgccaccgccgctgcctcagaaccccacccccgaggaggatttcctcaggattgagctcgacggctgggacaacgacgaggacgacgaggacgcgcacagcgtcgagtttcacaatgaaggcggcgaggaaaacgaagaggcggaagaggaggaggaggaggaagaagaagaggatagatctgatcgcgaggaggaagagaatcaaggagatcggcaagagcgagacgaagaagacctgcgacgacgtcgtcgcgatgtgctgcgtctccgcatcagagacattgctacccgggccaggagcgggaggaaccggattctcgattgggccgagatattgatgggcctggaggacaactccatcgaattacggttcgagatgcccgaatcggatcgttacgtaggcaatcctgaggattacgtggacgcagctgggtatgaagctctgcttcagactttggcggagaccgatagcagtggaaggagaggagctccaccggcttcgaaagcagccgtatcggaattgccagcggtggagattaagtctgtggatgaggctgtggtttgtgccatatgcaaggatatggttaatgttggtgaaatgtcaaagaagctgccatgcgggcatggatatcatggtgactgcattgtgccatggctgagctctaggaattcctgcccggtttgccggtttgagctgcccaccgatgatcctgaatacgaggaggagaggaagaagcaagctgtcaatgtgagtgccggagcttcgggttctggtggagataattcagtctccggctga

Protein Analysis

365

Amino Acids

40.87

Weight (kDa)

4.32

Isoelectric Point (pI)

80.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0014025)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G64920
fragaria_vesca FvH4_2g38280
malus_domestica MD08G1011000.v1.1 MD15G1011000.v1.1
prunus_persica Prupe.1G363700_v2.0.a1
pyrus_communis pycom15g00940
rosa_chinensis RchiOBHm_Chr6g0303101
rosa_laevigata RLG00000011108
rosa_multiflora Rmu_sc0003721.1_g000001 Rmu_sc0008911.1_g000004
rosa_roxburghii Rroxscaffold_7G00165020
rosa_rugosa Rorug06G0319200
rosa_samantha Rh6AG433000 Rh6BG469700 Rh6CG445300 Rh6DG432100
rosa_wichuraiana Rw6G037530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 546
AatII GACGTC 1 cut(s) 547
Acc36I ACCTGC 1 cut(s) 543
AccBSI CCGCTC 1 cut(s) 600
AccII CGCG 8 cut(s) 34, 108, 275, 286, 299, 392, 486, 552
AclWI GGATC 4 cut(s) 30, 201, 696, 1001
AcoI YGGCCR 2 cut(s) 3, 209
AcsI RAATTY 1 cut(s) 967
AcuI CTGAAG 1 cut(s) 731
AcyI GRCGYC 1 cut(s) 544
AfaI GTAC 1 cut(s) 83
AfiI CCNNNNNNNGG 4 cut(s) 239, 334, 594, 600
AjnI CCWGG 3 cut(s) 255, 593, 642
AluBI AGCT 9 cut(s) 355, 728, 740, 788, 910, 960, 994, 1040, 1061
AluI AGCT 9 cut(s) 355, 728, 740, 788, 910, 960, 994, 1040, 1061
Alw21I GWGCWC 4 cut(s) 264, 357, 790, 962
AlwI GGATC 4 cut(s) 30, 201, 696, 1001
Ama87I CYCGRG 2 cut(s) 329, 588
AoxI GGCC 5 cut(s) 3, 209, 591, 624, 640
ApeKI GCWGC 7 cut(s) 70, 310, 559, 725, 806, 910, 994
ApoI RAATTY 1 cut(s) 967
ArsI GACNNNNNNTTYG 2 cut(s) 221, 253
Asp700I GAANNNNTTC 2 cut(s) 167, 180
AspLEI GCGC 6 cut(s) 70, 108, 277, 286, 301, 394
AspS9I GGNCC 3 cut(s) 591, 624, 640
AsuC2I CCSGG 5 cut(s) 137, 208, 589, 590, 977
AsuHPI GGTGA 2 cut(s) 905, 947
AsuII TTCGAA 1 cut(s) 800
AvaI CYCGRG 2 cut(s) 329, 588
AxyI CCTNAGG 2 cut(s) 344, 708
BanII GRGCYC 3 cut(s) 357, 790, 962
BbsI GAAGAC 1 cut(s) 537
Bbv12I GWGCWC 4 cut(s) 264, 357, 790, 962
BbvI GCAGC 7 cut(s) 82, 297, 546, 737, 818, 897, 981
BccI CCATC 3 cut(s) 22, 631, 665
BceAI ACGGC 3 cut(s) 196, 376, 794
BcgI CGANNNNNNTGC 2 cut(s) 795, 829
BciT130I CCWGG 3 cut(s) 257, 595, 644
BcnI CCSGG 5 cut(s) 137, 208, 589, 590, 977
BfaI CTAG 1 cut(s) 963
BfuAI ACCTGC 1 cut(s) 543
BglI GCCNNNNNGGC 1 cut(s) 919
BglII AGATCT 1 cut(s) 476
BlpI GCTNAGC 1 cut(s) 956
BmcAI AGTACT 1 cut(s) 83
Bme1390I CCNGG 8 cut(s) 137, 208, 257, 589, 590, 595, 644, 977
BmeT110I CYCGRG 2 cut(s) 329, 588
BmgT120I GGNCC 3 cut(s) 591, 624, 640
BmiI GGNNCC 2 cut(s) 244, 608
BmrFI CCNGG 8 cut(s) 137, 208, 257, 589, 590, 595, 644, 977
BmsI GCATC 2 cut(s) 579, 666
BpiI GAAGAC 1 cut(s) 537
BplI GAGNNNNNCTC 4 cut(s) 638, 670, 772, 804
BpmI CTGGAG 2 cut(s) 239, 665
Bpu1102I GCTNAGC 1 cut(s) 956
Bpu14I TTCGAA 1 cut(s) 800
BpuMI CCSGG 5 cut(s) 137, 208, 589, 590, 977
Bsa29I ATCGAT 1 cut(s) 179
BsaAI YACGTR 2 cut(s) 697, 718
BsaHI GRCGYC 1 cut(s) 544
BsaI GGTCTC 2 cut(s) 47, 755
BsaJI CCNNGG 3 cut(s) 330, 588, 950
BsaWI WCCGGW 1 cut(s) 609
BsaXI ACNNNNNCTCC 4 cut(s) 71, 101, 824, 854
Bsc4I CCNNNNNNNGG 4 cut(s) 239, 334, 594, 600
Bse118I RCCGGY 2 cut(s) 793, 984
Bse1I ACTGG 1 cut(s) 89
Bse21I CCTNAGG 2 cut(s) 344, 708
Bse3DI GCAATG 1 cut(s) 579
BseBI CCWGG 3 cut(s) 257, 595, 644
BseCI ATCGAT 1 cut(s) 179
BseDI CCNNGG 3 cut(s) 330, 588, 950
BseGI GGATG 2 cut(s) 196, 853
BseLI CCNNNNNNNGG 4 cut(s) 239, 334, 594, 600
BseMI GCAATG 1 cut(s) 579
BseMII CTCAG 5 cut(s) 32, 329, 358, 699, 947
BseNI ACTGG 1 cut(s) 89
BseX3I CGGCCG 1 cut(s) 209
BseXI GCAGC 7 cut(s) 82, 297, 546, 737, 818, 897, 981
BseYI CCCAGC 2 cut(s) 363, 728
Bsh1236I CGCG 8 cut(s) 34, 108, 275, 286, 299, 392, 486, 552
Bsh1285I CGRYCG 2 cut(s) 126, 212
BshFI GGCC 5 cut(s) 5, 211, 593, 626, 642
BshVI ATCGAT 1 cut(s) 179
BsiEI CGRYCG 2 cut(s) 126, 212
BsiHKAI GWGCWC 4 cut(s) 264, 357, 790, 962
BsiHKCI CYCGRG 2 cut(s) 329, 588
BslFI GGGAC 1 cut(s) 380
BslI CCNNNNNNNGG 4 cut(s) 239, 334, 594, 600
BsmBI CGTCTC 6 cut(s) 46, 53, 113, 115, 516, 569
BsmFI GGGAC 1 cut(s) 380
BsnI GGCC 5 cut(s) 5, 211, 593, 626, 642
Bso31I GGTCTC 2 cut(s) 47, 755
BsoBI CYCGRG 2 cut(s) 329, 588
Bsp119I TTCGAA 1 cut(s) 800
Bsp1286I GDGCHC 4 cut(s) 264, 357, 790, 962
Bsp143I GATC 9 cut(s) 35, 193, 217, 270, 476, 481, 508, 688, 1006
Bsp1720I GCTNAGC 1 cut(s) 956
Bsp19I CCATGG 1 cut(s) 950
Bsp68I TCGCGA 2 cut(s) 486, 552
BspANI GGCC 5 cut(s) 5, 211, 593, 626, 642
BspCNI CTCAG 5 cut(s) 31, 328, 357, 700, 948
BspDI ATCGAT 1 cut(s) 179
BspFNI CGCG 8 cut(s) 34, 108, 275, 286, 299, 392, 486, 552
BspLI GGNNCC 2 cut(s) 244, 608
BspMI ACCTGC 1 cut(s) 543
BspPI GGATC 4 cut(s) 30, 201, 696, 1001
BspT104I TTCGAA 1 cut(s) 800
BspTNI GGTCTC 2 cut(s) 47, 755
BsrBI CCGCTC 1 cut(s) 600
BsrDI GCAATG 1 cut(s) 579
BsrFI RCCGGY 2 cut(s) 793, 984
BsrI ACTGG 1 cut(s) 89
BssAI RCCGGY 2 cut(s) 793, 984
BssECI CCNNGG 3 cut(s) 330, 588, 950
BssMI GATC 9 cut(s) 35, 193, 217, 270, 476, 481, 508, 688, 1006
BssNI GRCGYC 1 cut(s) 544
BssT1I CCWWGG 1 cut(s) 950
Bst2UI CCWGG 3 cut(s) 257, 595, 644
Bst4CI ACNGT 3 cut(s) 124, 189, 669
Bst6I CTCTTC 4 cut(s) 429, 438, 462, 489
BstACI GRCGYC 1 cut(s) 544
BstBAI YACGTR 2 cut(s) 697, 718
BstBI TTCGAA 1 cut(s) 800
BstC8I GCNNGC 4 cut(s) 279, 825, 920, 1038
BstDEI CTNAG 5 cut(s) 18, 315, 344, 708, 956
BstDSI CCRYGG 1 cut(s) 950
BstF5I GGATG 2 cut(s) 196, 853
BstFNI CGCG 8 cut(s) 34, 108, 275, 286, 299, 392, 486, 552
BstHHI GCGC 6 cut(s) 70, 108, 277, 286, 301, 394
BstKTI GATC 9 cut(s) 38, 196, 220, 273, 479, 484, 511, 691, 1009
BstMBI GATC 9 cut(s) 35, 193, 217, 270, 476, 481, 508, 688, 1006
BstMCI CGRYCG 2 cut(s) 126, 212
BstNI CCWGG 3 cut(s) 257, 595, 644
BstSCI CCNGG 8 cut(s) 135, 206, 255, 587, 588, 593, 642, 975
BstSNI TACGTA 1 cut(s) 697
BstUI CGCG 8 cut(s) 34, 108, 275, 286, 299, 392, 486, 552
BstV1I GCAGC 7 cut(s) 82, 297, 546, 737, 818, 897, 981
BstV2I GAAGAC 1 cut(s) 537
BstX2I RGATCY 1 cut(s) 476
BstYI RGATCY 1 cut(s) 476
BstZI CGGCCG 1 cut(s) 209
Bsu15I ATCGAT 1 cut(s) 179
Bsu36I CCTNAGG 2 cut(s) 344, 708
BsuRI GGCC 5 cut(s) 5, 211, 593, 626, 642
BsuTUI ATCGAT 1 cut(s) 179
BtgI CCRYGG 1 cut(s) 950
BtgZI GCGATG 1 cut(s) 567
BtsCI GGATG 2 cut(s) 196, 853
BtsI GCAGTG 2 cut(s) 94, 778
BtsIMutI CAGTG 2 cut(s) 94, 778
BtuMI TCGCGA 2 cut(s) 486, 552
BveI ACCTGC 1 cut(s) 543
Cac8I GCNNGC 4 cut(s) 279, 825, 920, 1038
CfoI GCGC 6 cut(s) 70, 108, 277, 286, 301, 394
Cfr10I RCCGGY 2 cut(s) 793, 984
Cfr13I GGNCC 3 cut(s) 591, 624, 640
Cfr9I CCCGGG 1 cut(s) 588
ClaI ATCGAT 1 cut(s) 179
CseI GACGC 6 cut(s) 97, 305, 388, 398, 551, 731
Csp6I GTAC 1 cut(s) 82
CviAII CATG 4 cut(s) 915, 923, 932, 951
CviQI GTAC 1 cut(s) 82
DdeI CTNAG 5 cut(s) 18, 315, 344, 708, 956
DpnI GATC 9 cut(s) 37, 195, 219, 272, 478, 483, 510, 690, 1008
DpnII GATC 9 cut(s) 35, 193, 217, 270, 476, 481, 508, 688, 1006
DrdI GACNNNNNNGTC 1 cut(s) 546
DseDI GACNNNNNNGTC 1 cut(s) 546
EaeI YGGCCR 2 cut(s) 3, 209
EagI CGGCCG 1 cut(s) 209
Eam1104I CTCTTC 4 cut(s) 429, 438, 462, 489
EarI CTCTTC 4 cut(s) 429, 438, 462, 489
EciI GGCGGA 3 cut(s) 239, 455, 773
Ecl136II GAGCTC 3 cut(s) 355, 788, 960
EclXI CGGCCG 1 cut(s) 209
Eco105I TACGTA 1 cut(s) 697
Eco130I CCWWGG 1 cut(s) 950
Eco24I GRGCYC 3 cut(s) 357, 790, 962
Eco31I GGTCTC 2 cut(s) 47, 755
Eco32I GATATC 1 cut(s) 929
Eco52I CGGCCG 1 cut(s) 209
Eco53kI GAGCTC 3 cut(s) 355, 788, 960
Eco57I CTGAAG 1 cut(s) 731
Eco81I CCTNAGG 2 cut(s) 344, 708
Eco88I CYCGRG 2 cut(s) 329, 588
EcoICRI GAGCTC 3 cut(s) 355, 788, 960
EcoRI GAATTC 1 cut(s) 967
EcoRII CCWGG 3 cut(s) 255, 593, 642
EcoRV GATATC 1 cut(s) 929
EcoT14I CCWWGG 1 cut(s) 950
EcoT38I GRGCYC 3 cut(s) 357, 790, 962
ErhI CCWWGG 1 cut(s) 950
Esp3I CGTCTC 6 cut(s) 46, 53, 113, 115, 516, 569
FaeI CATG 4 cut(s) 918, 926, 935, 954
FaiI YATR 8 cut(s) 735, 869, 871, 881, 916, 924, 933, 952
FalI AAGNNNNNCTT 2 cut(s) 729, 761
FaqI GGGAC 1 cut(s) 380
FatI CATG 4 cut(s) 914, 922, 931, 950
FauI CCCGC 2 cut(s) 593, 911
FauNDI CATATG 1 cut(s) 869
FokI GGATG 2 cut(s) 183, 860
FriOI GRGCYC 3 cut(s) 357, 790, 962
FspBI CTAG 1 cut(s) 963
GlaI GCGC 6 cut(s) 69, 107, 276, 285, 300, 393
GsaI CCCAGC 2 cut(s) 367, 732
GsuI CTGGAG 2 cut(s) 239, 665
HaeIII GGCC 5 cut(s) 5, 211, 593, 626, 642
HgaI GACGC 6 cut(s) 97, 305, 388, 398, 551, 731
HhaI GCGC 6 cut(s) 70, 108, 277, 286, 301, 394
Hin1I GRCGYC 1 cut(s) 544
Hin1II CATG 4 cut(s) 918, 926, 935, 954
Hin6I GCGC 6 cut(s) 68, 106, 275, 284, 299, 392
HinP1I GCGC 6 cut(s) 68, 106, 275, 284, 299, 392
HinfI GANTC 5 cut(s) 176, 181, 499, 613, 683
HphI GGTGA 2 cut(s) 905, 947
Hpy166II GTNNAC 1 cut(s) 721
Hpy188I TCNGA 9 cut(s) 46, 193, 217, 318, 481, 575, 688, 750, 817
Hpy188III TCNNGA 8 cut(s) 118, 346, 485, 551, 617, 673, 707, 1010
Hpy8I GTNNAC 1 cut(s) 721
HpyAV CCTTC 3 cut(s) 247, 410, 771
HpyCH4III ACNGT 3 cut(s) 124, 189, 669
HpyCH4IV ACGT 3 cut(s) 544, 696, 717
HpyCH4V TGCA 4 cut(s) 99, 159, 873, 942
HpyF3I CTNAG 5 cut(s) 18, 315, 344, 708, 956
HpySE526I ACGT 3 cut(s) 544, 696, 717
Hsp92I GRCGYC 1 cut(s) 544
Hsp92II CATG 4 cut(s) 918, 926, 935, 954
HspAI GCGC 6 cut(s) 68, 106, 275, 284, 299, 392
Kzo9I GATC 9 cut(s) 35, 193, 217, 270, 476, 481, 508, 688, 1006
LmnI GCTCC 6 cut(s) 248, 267, 597, 785, 793, 1058
Lsp1109I GCAGC 7 cut(s) 82, 297, 546, 737, 818, 897, 981
LweI GCATC 2 cut(s) 579, 666
MaeI CTAG 1 cut(s) 963
MaeII ACGT 3 cut(s) 544, 696, 717
MaeIII GTNAC 2 cut(s) 692, 935
MalI GATC 9 cut(s) 37, 195, 219, 272, 478, 483, 510, 690, 1008
MbiI CCGCTC 1 cut(s) 600
MboI GATC 9 cut(s) 35, 193, 217, 270, 476, 481, 508, 688, 1006
MboII GAAGA 9 cut(s) 446, 455, 473, 476, 479, 506, 539, 542, 1042
MflI RGATCY 1 cut(s) 476
MhlI GDGCHC 4 cut(s) 264, 357, 790, 962
MluCI AATT 4 cut(s) 662, 818, 967, 1081
MmeI TCCRAC 2 cut(s) 69, 171
MroXI GAANNNNTTC 2 cut(s) 167, 180
MseI TTAA 2 cut(s) 837, 885
MspA1I CMGCKG 3 cut(s) 310, 728, 827
MspR9I CCNGG 8 cut(s) 137, 208, 257, 589, 590, 595, 644, 977
MvaI CCWGG 3 cut(s) 257, 595, 644
MvnI CGCG 8 cut(s) 34, 108, 275, 286, 299, 392, 486, 552
NciI CCSGG 5 cut(s) 137, 208, 589, 590, 977
NcoI CCATGG 1 cut(s) 950
NdeI CATATG 1 cut(s) 869
NdeII GATC 9 cut(s) 35, 193, 217, 270, 476, 481, 508, 688, 1006
NlaIII CATG 4 cut(s) 918, 926, 935, 954
NlaIV GGNNCC 2 cut(s) 244, 608
NmeAIII GCCGAG 1 cut(s) 652
NmuCI GTSAC 1 cut(s) 935
NruI TCGCGA 2 cut(s) 486, 552
NspV TTCGAA 1 cut(s) 800
PcsI WCGNNNNNNNCGW 8 cut(s) 150, 185, 378, 381, 396, 517, 624, 678
PdmI GAANNNNTTC 2 cut(s) 167, 180
PfeI GAWTC 5 cut(s) 176, 181, 499, 613, 683
PflFI GACNNNGTC 3 cut(s) 143, 543, 546
PfoI TCCNGGA 1 cut(s) 135
Ppu21I YACGTR 2 cut(s) 697, 718
Psp124BI GAGCTC 3 cut(s) 357, 790, 962
Psp6I CCWGG 3 cut(s) 255, 593, 642
PspFI CCCAGC 2 cut(s) 363, 728
PspGI CCWGG 3 cut(s) 255, 593, 642
PspN4I GGNNCC 2 cut(s) 244, 608
PspPI GGNCC 3 cut(s) 591, 624, 640
PsuI RGATCY 1 cut(s) 476
PsyI GACNNNGTC 3 cut(s) 143, 543, 546
PvuII CAGCTG 1 cut(s) 728
RruI TCGCGA 2 cut(s) 486, 552
RsaI GTAC 1 cut(s) 83
RsaNI GTAC 1 cut(s) 82
SacI GAGCTC 3 cut(s) 357, 790, 962
SaqAI TTAA 2 cut(s) 837, 885
Sau3AI GATC 9 cut(s) 35, 193, 217, 270, 476, 481, 508, 688, 1006
Sau96I GGNCC 3 cut(s) 591, 624, 640
ScaI AGTACT 1 cut(s) 83
ScrFI CCNGG 8 cut(s) 137, 208, 257, 589, 590, 595, 644, 977
SduI GDGCHC 4 cut(s) 264, 357, 790, 962
SfaNI GCATC 2 cut(s) 579, 666
SfuI TTCGAA 1 cut(s) 800
SmaI CCCGGG 1 cut(s) 590
SnaBI TACGTA 1 cut(s) 697
Sse9I AATT 4 cut(s) 662, 818, 967, 1081
SspMI CTAG 1 cut(s) 963
SstI GAGCTC 3 cut(s) 357, 790, 962
StyD4I CCNGG 8 cut(s) 135, 206, 255, 587, 588, 593, 642, 975
StyI CCWWGG 1 cut(s) 950
TaaI ACNGT 3 cut(s) 124, 189, 669
TaiI ACGT 3 cut(s) 547, 699, 720
TaqI TCGA 8 cut(s) 117, 179, 357, 402, 618, 660, 672, 800
TaqII GACCGA 2 cut(s) 71, 779
TasI AATT 4 cut(s) 662, 818, 967, 1081
TatI WGTACW 1 cut(s) 81
TauI GCSGC 7 cut(s) 28, 31, 34, 76, 284, 310, 423
TfiI GAWTC 5 cut(s) 176, 181, 499, 613, 683
Tru1I TTAA 2 cut(s) 837, 885
Tru9I TTAA 2 cut(s) 837, 885
TscAI CASTG 2 cut(s) 101, 778
TseFI GTSAC 1 cut(s) 935
TseI GCWGC 7 cut(s) 70, 310, 559, 725, 806, 910, 994
Tsp45I GTSAC 1 cut(s) 935
TspDTI ATGAA 2 cut(s) 429, 750
TspGWI ACGGA 4 cut(s) 28, 65, 77, 103
TspMI CCCGGG 1 cut(s) 588
TspRI CASTG 2 cut(s) 101, 778
Tth111I GACNNNGTC 3 cut(s) 143, 543, 546
XapI RAATTY 1 cut(s) 967
XmaI CCCGGG 1 cut(s) 588
XmnI GAANNNNTTC 2 cut(s) 167, 180
XspI CTAG 1 cut(s) 963
ZraI GACGTC 1 cut(s) 545
ZrmI AGTACT 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.