Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009767.1

Orthogroup ID

OG0006988

Physical Location & Seq

Genomic Coordinates Reverse (-)

16430 .. 20938

Gene Structure 4509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009767.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2955 bp

atgttgtcatttaagatggatttgatctgggtttgtcccttggtgtttctttatcttggggtgttctcatttgggtctagtaataatctttcttcaagaccggctgctgtcaacattggagctcttttcacgtttgactctacgattggtaaggttgccaagattgctattgaggaagcagtaaaagatgtcaactccaatttcagcattctccatgggaccgaacttgttgcgaaatatcagaataccaattgcagtgggtttcttggaatggttgaagctttgcaattcatggagactgatatcgttgccattataggcccacaatcttctgtggttgcccatattgtatcccacattgcaaatgaactccaagtaccgcttctgtcatttgcagccacagacccaactctctcagaccttcagttcccatattttattaggacaacacaaagtgatttgtatcaaatggctgcagttgctcaaattgttgatcattatggttggagagaggttattgccatttttgtggatgatgattatgggcgtaatggcatatcagctttagatgataaacttgctgaaaggcgctgtaaaatttcctacaagttggcaattcccccaggaccggcagctaatcggagtgccatcatggatctgcttattaaggttgccttattggaatctcgcgttatagttcttcatgtgaatcctgattcaggtttcatggttcttgctgtggcacagtatcttaaaatgatgggtgatggttttgtatggatagctacagattggctttcatctgttttagattctgcttttcctcttccttctgaaatcatggatacactacaaggagttcttgttttgcggctacatacaccagattcagataggaagagggccttcttttctaagtggaacaagctaaccggtggttctttgggactgcatacttatgggcttcatgcttatgattctgtttggctgttagctcatgctattgatgcgtttttcaaccagggtggggttatttcgttctctaatgattctaggataaaagctgtagaacaaggtgatagtcttcaccttgatgcaatgagcatttttgatgatggaccactcctgttgaagaacatattgcaaagtaaccttgttggtttgacaggtcccattaagtttgattcagaaagggctcttgctcttccagcatatgatgttattaatgtggttggaactgggtttcgacgaattggttactggtccaactattctgggttatcaactgtacctcctgagactctctattcaaagccacttaatcgttcaagtgcaaatcaacagttatatagtgttatctggccaggggagtcattattgaagccccgtggttgggttttcccaaacaatgggatacaattgagaattggtgtacccattcgggtcagttaccgggagtttgtaacgccaattcagggaactgatactttcaagggtttctgcatagatgtattcaatgctgctgtaaacttgttgccatatgctgttccttacaagtttatcccttttggagatggtcaaaaaaacccaagctacacagagcttgtggcttctattacaacgggggtctttgatgctgcaattggcgacattgccattgttacaaatcgaacgaagatggtggattttacacagccatatgctgcatctggacttgttgtagtggccccctttaaaaaattgaactctggtgcttggaccttccttcgaccatttactgcacacatgtggatagtcactgctgcttccttttttgttattggtatagttgtatggattttggagcatagaataaatgatgaattcaggggtccaccaaagaagcaacttataaccatcttctggtttagcctctcaactctattctttgcccatagagagaacactgtgagcacccttggtcgagtagtgctacttatatggctgtttgtggttttgataatcacctctagttacactgctagtctgacatcaatcctcacagtgcagcagctatcttctcctatcaaaggaattgaaagcttgaaaaacagtggcgagccaatcgggtatcaagtgggttcttttgctgagcattatttgagtgaggagcttggcatatccaagtccaggctcattccccttgcctctcctctagcctatgctcaggcacttcagcttggtcctaaaaagggaggtgttgctgccgtggttgatgaacgcccgtcaagagttcaccaaaggcggctggggttttgtaagtctatgttcttaaagcattattattctgaagacaggtgcattgttcagcttggtcctaaaaagggaggtgttgctgccgtggttgatgaacgcccgtatgttgaactattcctctcagcacagtgcaaatttcggattgtaggtcaagagttcaccaaaggcggctggggttttgcatttcctcgagattctcctttagctgttgacatatcaactgcgattctacaattatcggagaatggtgatctgcaacggatccatgataagtggttggtgcaaaccacttgcagttttgagagcactgaaattgaatcagatcagcttcaactcagaagcttttggggcctctttctcatatgtggaattgcttgcttcattgctctccttgtatattttttgcaaattgcgaacaagttacgccgtgctgaccccccgcagagtgtttcaactagtcctggtgtctcacaatctgggcgagtccggcgatttttatcattaattgacaagaaggctgaacagtccagtagtggaagtaaaaaaaggaaagttattagatcactatccgacaatgataaggatggcaagttgggttggcctcccaagaagaaacaagaagaaatgactgatatgggtgacatcaagtctagcagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007267 GO:0008066 GO:0008150 GO:0008324 GO:0009605 GO:0009606 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009628 GO:0009629 GO:0009630 GO:0009682 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009864 GO:0009867 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0031347 GO:0031349 GO:0032870 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0042742 GO:0043200 GO:0043207 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046873 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071395 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0080134 GO:0098542 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

984

Amino Acids

108.76

Weight (kDa)

8.53

Isoelectric Point (pI)

41.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006988)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42540 AT1G42540 AT1G42540 AT1G42540
fragaria_vesca	FvH4_5g25730 FvH4_5g25730 FvH4_5g25730 FvH4_5g25730 FvH4_5g25730 FvH4_5g25730
malus_domestica	MD06G1006800.v1.1
prunus_persica	Prupe.5G008300_v2.0.a1 Prupe.5G008300_v2.0.a1 Prupe.5G008300_v2.0.a1 Prupe.5G008300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0216081
rosa_laevigata	RLG00000002596
rosa_multiflora	Rmu_sc0009767.1_g000004
rosa_roxburghii	Rroxscaffold_3G00243670
rosa_rugosa	Rorug07G0158700
rosa_samantha	Rh7AG295700 Rh7BG288100 Rh7CG316100 Rh7DG298600
rosa_wichuraiana	Rw7G025150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1892
AccB7I	CCANNNNNTGG	2 cut(s)	1409, 1902
AccII	CGCG	1 cut(s)	690
AciI	CCGC	5 cut(s)	380, 871, 2284, 2463, 2735
AclWI	GGATC	3 cut(s)	663, 2551, 2564
AcoI	YGGCCR	1 cut(s)	1361
AcsI	RAATTY	3 cut(s)	597, 1862, 2429
AcuI	CTGAAG	3 cut(s)	407, 2198, 2349
AdeI	CACNNNGTG	1 cut(s)	455
AfaI	GTAC	3 cut(s)	378, 1290, 1434
AflIII	ACRYGT	1 cut(s)	1785
AgeI	ACCGGT	1 cut(s)	932
AhdI	GACNNNNNGTC	1 cut(s)	2941
AhlI	ACTAGT	1 cut(s)	2750
AjnI	CCWGG	5 cut(s)	622, 1020, 1363, 2168, 2755
AjuI	GAANNNNNNNTTGG	2 cut(s)	366, 398
AleI	CACNNNNGTG	1 cut(s)	1786
Alw21I	GWGCWC	3 cut(s)	124, 1955, 2603
Alw26I	GTCTC	3 cut(s)	290, 1292, 2767
AlwI	GGATC	3 cut(s)	663, 2551, 2564
Ama87I	CYCGRG	1 cut(s)	2484
AoxI	GGCC	6 cut(s)	319, 903, 1361, 1725, 2644, 2894
ApoI	RAATTY	3 cut(s)	597, 1862, 2429
AseI	ATTAAT	2 cut(s)	1224, 2798
AsiGI	ACCGGT	1 cut(s)	932
AspLEI	GCGC	1 cut(s)	591
AsuC2I	CCSGG	1 cut(s)	1454
AsuHPI	GGTGA	8 cut(s)	776, 1079, 1088, 1996, 2267, 2446, 2555, 2945
AvaI	CYCGRG	1 cut(s)	2484
AvaII	GGWCC	9 cut(s)	219, 626, 1118, 1169, 1263, 1758, 1871, 2222, 2354
BalI	TGGCCA	1 cut(s)	1363
BamHI	GGATCC	1 cut(s)	2556
BanII	GRGCYC	2 cut(s)	124, 1198
BbsI	GAAGAC	2 cut(s)	1076, 2337
Bbv12I	GWGCWC	3 cut(s)	124, 1955, 2603
BccI	CCATC	9 cut(s)	10, 656, 754, 761, 1109, 1568, 1672, 1904, 2873
BceAI	ACGGC	3 cut(s)	2231, 2363, 2706
BcgI	CGANNNNNNTGC	2 cut(s)	212, 246
BciT130I	CCWGG	5 cut(s)	624, 1022, 1365, 2170, 2757
BciVI	GTATCC	3 cut(s)	361, 838, 1407
BclI	TGATCA	1 cut(s)	493
BcnI	CCSGG	1 cut(s)	1454
BcoDI	GTCTC	3 cut(s)	290, 1292, 2767
BcuI	ACTAGT	1 cut(s)	2750
BfaI	CTAG	7 cut(s)	78, 1053, 2010, 2022, 2195, 2751, 2946
BfmI	CTRYAG	3 cut(s)	474, 786, 1065
BfoI	RGCGCY	1 cut(s)	592
BfuI	GTATCC	3 cut(s)	361, 838, 1407
BlpI	GCTNAGC	1 cut(s)	2130
Bme1390I	CCNGG	6 cut(s)	624, 1022, 1365, 1454, 2170, 2757
Bme18I	GGWCC	9 cut(s)	219, 626, 1118, 1169, 1263, 1758, 1871, 2222, 2354
BmeRI	GACNNNNNGTC	1 cut(s)	2941
BmeT110I	CYCGRG	1 cut(s)	2484
BmiI	GGNNCC	6 cut(s)	220, 1171, 1728, 1872, 2558, 2645
BmrFI	CCNGG	6 cut(s)	624, 1022, 1365, 1454, 2170, 2757
BmrI	ACTGGG	1 cut(s)	1248
BmsI	GCATC	4 cut(s)	997, 1084, 1624, 1715
BmuI	ACTGGG	1 cut(s)	1248
BpiI	GAAGAC	2 cut(s)	1076, 2337
Bpu10I	CCTNAGC	1 cut(s)	2205
Bpu1102I	GCTNAGC	1 cut(s)	2130
BpuMI	CCSGG	1 cut(s)	1454
BsaBI	GATNNNNATC	3 cut(s)	462, 2791, 2860
BsaJI	CCNNGG	9 cut(s)	39, 214, 622, 1021, 1364, 1387, 1957, 2247, 2379
BsaWI	WCCGGW	1 cut(s)	932
BsaXI	ACNNNNNCTCC	4 cut(s)	849, 879, 1276, 1306
Bse118I	RCCGGY	3 cut(s)	100, 628, 932
Bse1I	ACTGG	3 cut(s)	1243, 1265, 2823
Bse3DI	GCAATG	4 cut(s)	357, 1104, 1650, 2676
Bse8I	GATNNNNATC	3 cut(s)	462, 2791, 2860
BseBI	CCWGG	5 cut(s)	624, 1022, 1365, 2170, 2757
BseDI	CCNNGG	9 cut(s)	39, 214, 622, 1021, 1364, 1387, 1957, 2247, 2379
BseGI	GGATG	2 cut(s)	538, 2884
BseJI	GATNNNNATC	3 cut(s)	462, 2791, 2860
BseMI	GCAATG	4 cut(s)	357, 1104, 1650, 2676
BseMII	CTCAG	6 cut(s)	429, 1287, 2121, 2219, 2430, 2644
BseNI	ACTGG	3 cut(s)	1243, 1265, 2823
BseRI	GAGGAG	2 cut(s)	2162, 2181
BseYI	CCCAGC	2 cut(s)	2287, 2466
BsgI	GTGCAG	2 cut(s)	1764, 2066
Bsh1236I	CGCG	1 cut(s)	690
BshFI	GGCC	6 cut(s)	321, 905, 1363, 1727, 2646, 2896
BshTI	ACCGGT	1 cut(s)	932
BsiHKAI	GWGCWC	3 cut(s)	124, 1955, 2603
BsiHKCI	CYCGRG	1 cut(s)	2484
BsiSI	CCGG	5 cut(s)	101, 629, 933, 1453, 2782
BslFI	GGGAC	4 cut(s)	21, 232, 960, 1155
BsmAI	GTCTC	3 cut(s)	290, 1292, 2767
BsmFI	GGGAC	4 cut(s)	21, 232, 960, 1155
BsmI	GAATGC	1 cut(s)	207
BsnI	GGCC	6 cut(s)	321, 905, 1363, 1727, 2646, 2896
BsoBI	CYCGRG	1 cut(s)	2484
Bsp1286I	GDGCHC	4 cut(s)	124, 1198, 1955, 2603
Bsp143I	GATC	7 cut(s)	24, 493, 655, 2545, 2556, 2617, 2855
Bsp1720I	GCTNAGC	1 cut(s)	2130
Bsp19I	CCATGG	1 cut(s)	214
BspACI	CCGC	5 cut(s)	380, 871, 2284, 2463, 2735
BspANI	GGCC	6 cut(s)	321, 905, 1363, 1727, 2646, 2896
BspCNI	CTCAG	6 cut(s)	428, 1288, 2122, 2218, 2429, 2643
BspFNI	CGCG	1 cut(s)	690
BspLI	GGNNCC	6 cut(s)	220, 1171, 1728, 1872, 2558, 2645
BspMAI	CTGCAG	1 cut(s)	478
BspPI	GGATC	3 cut(s)	663, 2551, 2564
BspQI	GCTCTTC	1 cut(s)	1209
BsrDI	GCAATG	4 cut(s)	357, 1104, 1650, 2676
BsrFI	RCCGGY	3 cut(s)	100, 628, 932
BsrI	ACTGG	3 cut(s)	1243, 1265, 2823
BssAI	RCCGGY	3 cut(s)	100, 628, 932
BssECI	CCNNGG	9 cut(s)	39, 214, 622, 1021, 1364, 1387, 1957, 2247, 2379
BssMI	GATC	7 cut(s)	24, 493, 655, 2545, 2556, 2617, 2855
BssT1I	CCWWGG	3 cut(s)	39, 214, 1957
Bst2UI	CCWGG	5 cut(s)	624, 1022, 1365, 2170, 2757
Bst4CI	ACNGT	8 cut(s)	747, 1288, 1344, 1948, 2044, 2093, 2424, 2820
Bst6I	CTCTTC	3 cut(s)	831, 893, 1209
BstC8I	GCNNGC	2 cut(s)	2099, 2671
BstDEI	CTNAG	7 cut(s)	415, 915, 1296, 2130, 2205, 2416, 2630
BstDSI	CCRYGG	4 cut(s)	214, 1387, 2247, 2379
BstENI	CCTNNNNNAGG	2 cut(s)	717, 2067
BstF5I	GGATG	2 cut(s)	538, 2884
BstFNI	CGCG	1 cut(s)	690
BstH2I	RGCGCY	1 cut(s)	592
BstHHI	GCGC	1 cut(s)	591
BstKTI	GATC	7 cut(s)	27, 496, 658, 2548, 2559, 2620, 2858
BstMAI	GTCTC	3 cut(s)	290, 1292, 2767
BstMBI	GATC	7 cut(s)	24, 493, 655, 2545, 2556, 2617, 2855
BstMWI	GCNNNNNNNGC	6 cut(s)	164, 479, 1007, 1208, 2643, 2782
BstNI	CCWGG	5 cut(s)	624, 1022, 1365, 2170, 2757
BstNSI	RCATGY	1 cut(s)	1789
BstSCI	CCNGG	6 cut(s)	622, 1020, 1363, 1452, 2168, 2755
BstSFI	CTRYAG	3 cut(s)	474, 786, 1065
BstUI	CGCG	1 cut(s)	690
BstV2I	GAAGAC	2 cut(s)	1076, 2337
BstX2I	RGATCY	2 cut(s)	655, 2556
BstXI	CCANNNNNNTGG	1 cut(s)	529
BstYI	RGATCY	2 cut(s)	655, 2556
BsuI	GTATCC	3 cut(s)	361, 838, 1407
BsuRI	GGCC	6 cut(s)	321, 905, 1363, 1727, 2646, 2896
BtgI	CCRYGG	4 cut(s)	214, 1387, 2247, 2379
BtsCI	GGATG	2 cut(s)	538, 2884
BtsI	GCAGTG	3 cut(s)	262, 1797, 2016
BtsIMutI	CAGTG	8 cut(s)	262, 1797, 1944, 2016, 2049, 2098, 2429, 2601
Cac8I	GCNNGC	2 cut(s)	2099, 2671
CfoI	GCGC	1 cut(s)	591
Cfr10I	RCCGGY	3 cut(s)	100, 628, 932
Csp6I	GTAC	3 cut(s)	377, 1289, 1433
CspAI	ACCGGT	1 cut(s)	932
CspCI	CAANNNNNGTGG	6 cut(s)	238, 273, 1006, 1041, 1110, 1145
CviQI	GTAC	3 cut(s)	377, 1289, 1433
DdeI	CTNAG	7 cut(s)	415, 915, 1296, 2130, 2205, 2416, 2630
DpnI	GATC	7 cut(s)	26, 495, 657, 2547, 2558, 2619, 2857
DpnII	GATC	7 cut(s)	24, 493, 655, 2545, 2556, 2617, 2855
DraI	TTTAAA	1 cut(s)	1735
DraIII	CACNNNGTG	1 cut(s)	455
DriI	GACNNNNNGTC	1 cut(s)	2941
EaeI	YGGCCR	1 cut(s)	1361
Eam1104I	CTCTTC	3 cut(s)	831, 893, 1209
Eam1105I	GACNNNNNGTC	1 cut(s)	2941
EarI	CTCTTC	3 cut(s)	831, 893, 1209
Ecl136II	GAGCTC	1 cut(s)	122
Eco130I	CCWWGG	3 cut(s)	39, 214, 1957
Eco24I	GRGCYC	2 cut(s)	124, 1198
Eco32I	GATATC	1 cut(s)	304
Eco47I	GGWCC	9 cut(s)	219, 626, 1118, 1169, 1263, 1758, 1871, 2222, 2354
Eco53kI	GAGCTC	1 cut(s)	122
Eco57I	CTGAAG	3 cut(s)	407, 2198, 2349
Eco88I	CYCGRG	1 cut(s)	2484
EcoICRI	GAGCTC	1 cut(s)	122
EcoNI	CCTNNNNNAGG	2 cut(s)	717, 2067
EcoO109I	RGGNCCY	3 cut(s)	903, 1169, 2644
EcoRI	GAATTC	1 cut(s)	1862
EcoRII	CCWGG	5 cut(s)	622, 1020, 1363, 2168, 2755
EcoRV	GATATC	1 cut(s)	304
EcoT14I	CCWWGG	3 cut(s)	39, 214, 1957
EcoT38I	GRGCYC	2 cut(s)	124, 1198
ErhI	CCWWGG	3 cut(s)	39, 214, 1957
FalI	AAGNNNNNCTT	8 cut(s)	366, 398, 659, 691, 846, 878, 890, 922
FaqI	GGGAC	4 cut(s)	21, 232, 960, 1155
FauI	CCCGC	1 cut(s)	2742
FauNDI	CATATG	4 cut(s)	1213, 1540, 1699, 2657
FbaI	TGATCA	1 cut(s)	493
FokI	GGATG	2 cut(s)	545, 2891
FriOI	GRGCYC	2 cut(s)	124, 1198
FspBI	CTAG	7 cut(s)	78, 1053, 2010, 2022, 2195, 2751, 2946
GlaI	GCGC	1 cut(s)	590
GsaI	CCCAGC	2 cut(s)	2291, 2470
HaeII	RGCGCY	1 cut(s)	592
HaeIII	GGCC	6 cut(s)	321, 905, 1363, 1727, 2646, 2896
HapII	CCGG	5 cut(s)	101, 629, 933, 1453, 2782
HhaI	GCGC	1 cut(s)	591
Hin6I	GCGC	1 cut(s)	589
HinP1I	GCGC	1 cut(s)	589
HincII	GTYRAC	3 cut(s)	112, 193, 2506
HindII	GTYRAC	3 cut(s)	112, 193, 2506
HindIII	AAGCTT	3 cut(s)	279, 2080, 2635
HpaII	CCGG	5 cut(s)	101, 629, 933, 1453, 2782
HphI	GGTGA	8 cut(s)	776, 1079, 1088, 1996, 2267, 2446, 2555, 2945
Hpy166II	GTNNAC	8 cut(s)	112, 193, 1433, 1528, 1874, 2275, 2454, 2506
Hpy188III	TCNNGA	7 cut(s)	96, 713, 1295, 1710, 2268, 2447, 2486
Hpy8I	GTNNAC	8 cut(s)	112, 193, 1433, 1528, 1874, 2275, 2454, 2506
Hpy99I	CGWCG	1 cut(s)	1251
HpyAV	CCTTC	6 cut(s)	431, 840, 916, 1771, 1775, 2803
HpyCH4III	ACNGT	8 cut(s)	747, 1288, 1344, 1948, 2044, 2093, 2424, 2820
HpyCH4IV	ACGT	1 cut(s)	131
HpyF10VI	GCNNNNNNNGC	6 cut(s)	164, 479, 1007, 1208, 2643, 2782
HpyF3I	CTNAG	7 cut(s)	415, 915, 1296, 2130, 2205, 2416, 2630
HpySE526I	ACGT	1 cut(s)	131
HspAI	GCGC	1 cut(s)	589
Ksp22I	TGATCA	1 cut(s)	493
Kzo9I	GATC	7 cut(s)	24, 493, 655, 2545, 2556, 2617, 2855
LguI	GCTCTTC	1 cut(s)	1209
LmnI	GCTCC	3 cut(s)	119, 1843, 2149
LweI	GCATC	4 cut(s)	997, 1084, 1624, 1715
MaeI	CTAG	7 cut(s)	78, 1053, 2010, 2022, 2195, 2751, 2946
MaeII	ACGT	1 cut(s)	131
MaeIII	GTNAC	9 cut(s)	1148, 1256, 1448, 1462, 1660, 1795, 2012, 2715, 2933
MalI	GATC	7 cut(s)	26, 495, 657, 2547, 2558, 2619, 2857
MboI	GATC	7 cut(s)	24, 493, 655, 2545, 2556, 2617, 2855
MfeI	CAATTG	3 cut(s)	250, 1418, 1641
MflI	RGATCY	2 cut(s)	655, 2556
MhlI	GDGCHC	4 cut(s)	124, 1198, 1955, 2603
MlsI	TGGCCA	1 cut(s)	1363
MluNI	TGGCCA	1 cut(s)	1363
MlyI	GAGTC	4 cut(s)	131, 1294, 1379, 2787
MmeI	TCCRAC	4 cut(s)	485, 1213, 1290, 2889
Mox20I	TGGCCA	1 cut(s)	1363
MscI	TGGCCA	1 cut(s)	1363
MslI	CAYNNNNRTG	5 cut(s)	527, 957, 972, 1092, 1786
Msp20I	TGGCCA	1 cut(s)	1363
MspI	CCGG	5 cut(s)	101, 629, 933, 1453, 2782
MspR9I	CCNGG	6 cut(s)	624, 1022, 1365, 1454, 2170, 2757
MunI	CAATTG	3 cut(s)	250, 1418, 1641
Mva1269I	GAATGC	1 cut(s)	207
MvaI	CCWGG	5 cut(s)	624, 1022, 1365, 2170, 2757
MvnI	CGCG	1 cut(s)	690
MwoI	GCNNNNNNNGC	6 cut(s)	164, 479, 1007, 1208, 2643, 2782
NciI	CCSGG	1 cut(s)	1454
NcoI	CCATGG	1 cut(s)	214
NdeI	CATATG	4 cut(s)	1213, 1540, 1699, 2657
NdeII	GATC	7 cut(s)	24, 493, 655, 2545, 2556, 2617, 2855
NlaIV	GGNNCC	6 cut(s)	220, 1171, 1728, 1872, 2558, 2645
NmuCI	GTSAC	2 cut(s)	1795, 2933
NspI	RCATGY	1 cut(s)	1789
OliI	CACNNNNGTG	1 cut(s)	1786
PaeR7I	CTCGAG	1 cut(s)	2484
PciI	ACATGT	1 cut(s)	1785
PciSI	GCTCTTC	1 cut(s)	1209
PctI	GAATGC	1 cut(s)	207
PflMI	CCANNNNNTGG	2 cut(s)	1409, 1902
PinAI	ACCGGT	1 cut(s)	932
PleI	GAGTC	4 cut(s)	131, 1294, 1378, 2786
PpsI	GAGTC	4 cut(s)	131, 1294, 1378, 2786
PpuMI	RGGWCCY	1 cut(s)	1169
PscI	ACATGT	1 cut(s)	1785
PshBI	ATTAAT	2 cut(s)	1224, 2798
PsiI	TTATAA	1 cut(s)	1892
Psp124BI	GAGCTC	1 cut(s)	124
Psp5II	RGGWCCY	1 cut(s)	1169
Psp6I	CCWGG	5 cut(s)	622, 1020, 1363, 2168, 2755
PspFI	CCCAGC	2 cut(s)	2287, 2466
PspGI	CCWGG	5 cut(s)	622, 1020, 1363, 2168, 2755
PspN4I	GGNNCC	6 cut(s)	220, 1171, 1728, 1872, 2558, 2645
PspPPI	RGGWCCY	1 cut(s)	1169
PsrI	GAACNNNNNNTAC	2 cut(s)	360, 392
PstI	CTGCAG	1 cut(s)	478
PsuI	RGATCY	2 cut(s)	655, 2556
RsaI	GTAC	3 cut(s)	378, 1290, 1434
RsaNI	GTAC	3 cut(s)	377, 1289, 1433
RseI	CAYNNNNRTG	5 cut(s)	527, 957, 972, 1092, 1786
SacI	GAGCTC	1 cut(s)	124
SapI	GCTCTTC	1 cut(s)	1209
Sau3AI	GATC	7 cut(s)	24, 493, 655, 2545, 2556, 2617, 2855
SchI	GAGTC	4 cut(s)	131, 1294, 1379, 2787
ScrFI	CCNGG	6 cut(s)	624, 1022, 1365, 1454, 2170, 2757
SduI	GDGCHC	4 cut(s)	124, 1198, 1955, 2603
SfaNI	GCATC	4 cut(s)	997, 1084, 1624, 1715
SfcI	CTRYAG	3 cut(s)	474, 786, 1065
Sfr274I	CTCGAG	1 cut(s)	2484
SinI	GGWCC	9 cut(s)	219, 626, 1118, 1169, 1263, 1758, 1871, 2222, 2354
SlaI	CTCGAG	1 cut(s)	2484
SmiMI	CAYNNNNRTG	5 cut(s)	527, 957, 972, 1092, 1786
SmlI	CTYRAG	1 cut(s)	2484
SmoI	CTYRAG	1 cut(s)	2484
SpeI	ACTAGT	1 cut(s)	2750
SsiI	CCGC	5 cut(s)	380, 871, 2284, 2463, 2735
SspMI	CTAG	7 cut(s)	78, 1053, 2010, 2022, 2195, 2751, 2946
SstI	GAGCTC	1 cut(s)	124
StyD4I	CCNGG	6 cut(s)	622, 1020, 1363, 1452, 2168, 2755
StyI	CCWWGG	3 cut(s)	39, 214, 1957
TaaI	ACNGT	8 cut(s)	747, 1288, 1344, 1948, 2044, 2093, 2424, 2820
TaiI	ACGT	1 cut(s)	134
TaqI	TCGA	5 cut(s)	1246, 1669, 1768, 1963, 2485
TaqII	GACCGA	1 cut(s)	236
TauI	GCSGC	3 cut(s)	874, 2287, 2466
TscAI	CASTG	8 cut(s)	262, 1804, 1951, 2023, 2049, 2098, 2429, 2608
TseFI	GTSAC	2 cut(s)	1795, 2933
Tsp45I	GTSAC	2 cut(s)	1795, 2933
TspGWI	ACGGA	1 cut(s)	2569
TspRI	CASTG	8 cut(s)	262, 1804, 1951, 2023, 2049, 2098, 2429, 2608
Van91I	CCANNNNNTGG	2 cut(s)	1409, 1902
VpaK11BI	GGWCC	9 cut(s)	219, 626, 1118, 1169, 1263, 1758, 1871, 2222, 2354
VspI	ATTAAT	2 cut(s)	1224, 2798
XagI	CCTNNNNNAGG	2 cut(s)	717, 2067
XapI	RAATTY	3 cut(s)	597, 1862, 2429
XceI	RCATGY	1 cut(s)	1789
XhoI	CTCGAG	1 cut(s)	2484
XspI	CTAG	7 cut(s)	78, 1053, 2010, 2022, 2195, 2751, 2946

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.