Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0006988

Physical Location & Seq

Genomic Coordinates Forward (+)

12614985 .. 12619091

Gene Structure 4107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0158700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4107 bp

ATGCAGCGCTTCAAAGTTCTGGCTTGGAACTGTAGGGGCCTCAACAACACAGAAACACAAGATGCTCTTGTCAGTCTTGTTCGACAGCAAAACCCTAGTCTTATCTTCCTCTCCGAAACATTGGCTTCTCCAGATCTGTTGACGGCAGTTCAACGCCGGATAGGCTTTGATGGTTTCTTTTGTGCCCCTAAGGAGGATGGTTGTCGTGGCCTGGCTCTCTTCTGGCGCACTGAGATCCCGATCCGTTTCAGAACCTCTTCAGCCAACCATATTGATGCTGAGGTCGGTGTTGTAGGTTCTGCAGGAGTCTTTCGATTCACTGGTATTTATGGAGTGGCTACTACAGCGAATCGGGACATCACATGGAATCTCCTCCGTTTGTTAGCTTCTCAGTCCCATCTGCCTTGGTTAGTTGCAGGCGATTTCAATGAGATACTATGTCATGCAGATAAGTCAGGCGGTCTTCCTCGACCTGTAGCACAAATACACAGATTTAGACAAGCACTGGTTGATAGTGATTTGATCGATATGGGATTTGTTGGATCGCGTTTTACGTGGTCTAATCGTTTCACTAAGGAGAGACTTGATCGGGCCTGCCAAACAGTGCAATGGAGAGACCTCTATCCTTTCTCCCGAGTTCTCACCCTTCCTCTCAGTCAATCTGATCACTGCCCTATCTTGATCGAGGTGAATCTAGAACCAGCCTCATCGAACCGAAACCCTAAAGCTTTTCGTTTTGAGGAGATGTGGTTGGCTCATGCCGATTGTACTAATGTTGTTGAACAGGGTTGGATGCTCCCAACCATTGGTGATTCCATGCTACAAGTTGGCAGGAAGATCAAGCACACAGGACATCTTTTCTTAAAATGGCATTCTGGAGTCTACCAACAAAGACAGACCAAGATGCGATTGATTCAAGGCAAGTTAGATGACTTGATGAGGAAGAATTTTGAGGCGTGTCACTTTGACGAGCAAAAAGCTCTCCAATTCAGGTTGAATGAATTATCTACTGCTAATGAAACTTATTGGAGACAACGTTCCAGGATTCAATGGTTAAAGGAAGGGGACCGTAATACGGCTTTTTTTCATCGACGGGCTTCGAATCGTAGATGCAGAAACCGTCTTAAGGGTCTCACTAATGCATCGGGGCAATGGACTTCTACATCAGGAGAGGTCTCGGAGATATTGCTTCACTACTATGCATCTATCTTTAGGGCAGATACCTCGGAACCGGAGGCACTTAATGTTGTGTTGGATTGCTTGCAACCCAAAGTATCGGAAGAGATGAACTCTGGTCTTATAGCCCCATACTCTGATGCTGAGATCAAGAAGGCTTTGTTTCAAATGCATCCCTCAAAATCACCAGGTCCTGATGGGATGTCCCCATGTTTCTTCCAGAAATTTTGGAACGTGGTAGGACATGACGTCTGTTGTGCAGTTAGGGAAGTGTTGACTACGGGTAATGTCTCCCAGGAATCAAACTTTACACATCTTACTCTTATACCGAAGATCAAGGAACCCAAACTTCCTTCTGATTTGAGACCGATTGCGTTATGTAACGTGGTGTACAAGATAGCTTCCAAGGTCCTGGCCAACCGACTCAAGAAAATTCTGCCTCACATTATTTCCCCGTTACAGAGTGCTTTTGTTCCAGGTAGATTAATTTCGGATAATACTTTAGTTGCTACGGAGATTGCTCACTTTATGAAAAAGCTTCGTCGGCAGGCTGAGGGTTTTTTCTCTCTAAAATTGGACATTTCAAAAGCGTATGATCGGTTAGAGTGGCAGTATCTTGAAGCTGTCCTTCTCCGGTTGGGTTTTTGTAGAAGCTGGGTATCTATTGTATTAGCCACTGTGAAATCTGTCAGTTACTCTATTTTGCTAAATGGTGCTCCCACAGGTTTTATATTGCCCACCAGGGGTATCCGACAGGGAGACCCCTTATCTCCATATTTGTTTATTTTGTGCGCAGAAGGACTCTCAGCCTTGATTTCCTCGTCTTTTCAGAATGGAACCATCAGAGGCTTAACCATGGCCCCTAGTGCTCCCACCATTCACCATCTACTTTTTGCAGATGATAGCTTTCTCTTTGGGGAAGCCTCAGTCCAGGAATGTCAAGCTTTTCAACAGATACTCTCAGTGTATGCTCGAGCCTCTGGACAACATATTAATTTGCAGAAATCTAGTGTGGTGTTTAGTGGTAATGTTAGTTTGCAGAACAAGAATAATCTTGCAGCTATTCTTGGGGTGCAGTGTGTTAATGAACATGGTTTATACCTTGGCTTGCCTATTCATGTTGGGCACAACAAGAAAGCCATCTTTGCTTATCTCAAAGAGAGGCTGTCAAAGAAGCTCATTAGTTGGCGATCCAAGATTCTGAGTTCTGGAGGTAAGGAATTGTTGATTAAGGCAGTTGCTCAAACTTTACCTAATTATGTCATGAACTGTTATGCTCTGCCTAAGTCTATGTGCGATGAGCTACAACAGATGTGTTGCCAATTCTTTTGGGGTAGTACAGAGGAGAAAAAAAGAATACATTGGAGATCATGGGAAAGAATGTGCCTACCTAAAACTCAGGGAGGCATGGGATTCAAACATTTACATGCTCATAACTTGGCCATGCTTTCGAAACAGGGTTGGAGGATGCTCTCTAAACCTGAGTCACTTGTGGCCAGAGTGTTTAAAGCAGTTTATTATCCATTTGGATCCTTTCTCACAACAGATATGGGTGAGCGCCCTTCATATTCGTGGAGGAGTTTAATGGAGGCTCGACCGGTTTTACAAGCAGGGTTGTCCTGGAGGGTTGGTGATGGGCAGCTAATTAACATTTGGGATGATGAGTGGATCCCAAATGTCTCTCATCATTCTTTATCTCGACCGGCCGACTGTGTTTTTGATAGCGTTTCTGATTTGATTAATGGTGATTCCTTAACTTGGGACCATGCAGCTGTTCATGCTTGCTTTGAGCCTCAGGTGGAAGACCAAGTTCTTTCTATTCCATTGAGTCCTCGCTTTGGAAATGATCGCATGTCGTGGAAGTTTGAGAAGAGAGGGCACTTCTCTGTCAAGTCTGCTTATAGGGTTGCTTGTGATTTCTCTATTGGCCATATCTATGCTTCTACATCTACTGGGGACCCATATGGTCCCATTTGGAAAGCCTTATGGAGGGCTAAAGTCCCTAGTAAAGTGGCGATCTTTGGGTGGAGAGCTGTTCACAATCTCCTCCCAACTCGAGCTGCTTTAACCTCCAAAGGATATTCCGGTCCACTGCAGTGTGTGGTTTGCTCTAGAGGTGTGGAAACCTTAGAACATCTGTTTTGTGAGTGCAGCTTTGCGAGAGAGGTTGTTGGAGCTCCTCCGTTCTCTATTCCTACGTCTACTCTACGATGGAAAGATTGGCTACTAGCTCGGGTAACTTCGTTGGCACCTGCATCTTTTGACCAACTCTTGATCCTCCTCTGGAGTATGTGGAAGCACCGGAACGACGTATTATGGAGAGAGCATAATAGAACTAGTGCCAATCTAGTGGCCACTGCTATGGCATGGCATGAGGAGTATATGCAGGCTAACCGGTCTGTTGTCACTTCCCAGCACGATCGTTCGAAACCTAAAAAGTACTGGAGTCCTCCAGATGATGGTTTTGTAAAGTTGAATGTGGATGGCTCTTTCCTGCCTTCGGTTCAGTATGGTGGTACGGGGGGTGTGATTAGAAACTCTCATGGTCAGTTTATTGCTGGCTTCTCATGTAGAATGGAGTTTGTTAGCTCCCCGCTCCACGTCGAGTTACTTGCCTTGAAGAATGGATTGGAGTTGCTACAGGCTATGCAGATCACACGAGCTGTCGTGGAGAGTGACTGTTTGTTTGCAGTGCAGGCCATAAGCTCAATAGCTGTGGACCTCTCTCCTTTGGGTGCCTTGATCTCAGACCTCAAGTCTCTACTAGCTGCAAGTACGGAGTTTAAGCTCTGTTTTGTCCCTAGACAAACTAATATTGTAGCCCATAGACTCGCTAGTTTTAGTTATGAGACCAATGGACTTATTGATTGGTTTGTTAATGCTCCAGAGTTCATCTCGGATGCCCTCATGTACGATTCTATTCGTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007267 GO:0008066 GO:0008150 GO:0008324 GO:0009605 GO:0009606 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009628 GO:0009629 GO:0009630 GO:0009682 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009864 GO:0009867 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0031347 GO:0031349 GO:0032870 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0042742 GO:0043200 GO:0043207 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046873 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071395 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0080134 GO:0098542 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

1368

Amino Acids

154.13

Weight (kDa)

9.1

Isoelectric Point (pI)

42.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos	PF03372	8 - 223	3.4e-13	Endonuclease/Exonuclease/phosphatase family
RVT_1	PF00078	507 - 753	4.1e-28	Reverse transcriptase (RNA-dependent DNA polymerase)
zf-RVT	PF13966	1032 - 1115	5.6e-18	zinc-binding in reverse transcriptase
RVT_3	PF13456	1218 - 1339	3.6e-20	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006988)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42540 AT1G42540 AT1G42540 AT1G42540
fragaria_vesca	FvH4_5g25730 FvH4_5g25730 FvH4_5g25730 FvH4_5g25730 FvH4_5g25730 FvH4_5g25730
malus_domestica	MD06G1006800.v1.1
prunus_persica	Prupe.5G008300_v2.0.a1 Prupe.5G008300_v2.0.a1 Prupe.5G008300_v2.0.a1 Prupe.5G008300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0216081
rosa_laevigata	RLG00000002596
rosa_multiflora	Rmu_sc0009767.1_g000004
rosa_roxburghii	Rroxscaffold_3G00243670
rosa_rugosa	Rorug07G0158700
rosa_samantha	Rh7AG295700 Rh7BG288100 Rh7CG316100 Rh7DG298600
rosa_wichuraiana	Rw7G025150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	3436
AatII	GACGTC	1 cut(s)	1428
Acc16I	TGCGCA	1 cut(s)	1969
Acc36I	ACCTGC	1 cut(s)	3436
AccB1I	GGYRCC	2 cut(s)	3424, 3911
AccB7I	CCANNNNNTGG	2 cut(s)	806, 3635
AccBSI	CCGCTC	1 cut(s)	3772
AccI	GTMKAC	2 cut(s)	882, 3377
AccII	CGCG	1 cut(s)	547
AciI	CCGC	2 cut(s)	459, 3770
AclI	AACGTT	1 cut(s)	1036
AclWI	GGATC	9 cut(s)	229, 235, 550, 2361, 2700, 2713, 2839, 2852, 3445
AcoI	YGGCCR	6 cut(s)	1590, 2616, 2670, 2880, 3103, 3528
AcsI	RAATTY	3 cut(s)	946, 1400, 1608
AcuI	CTGAAG	1 cut(s)	243
AcyI	GRCGYC	1 cut(s)	1425
AfaI	GTAC	7 cut(s)	769, 1568, 2515, 3617, 3694, 3952, 4088
AfeI	AGCGCT	1 cut(s)	8
AflII	CTTAAG	1 cut(s)	1124
AgeI	ACCGGT	2 cut(s)	2773, 3570
AhdI	GACNNNNNGTC	2 cut(s)	1424, 3931
AhlI	ACTAGT	1 cut(s)	3512
AjiI	CACGTC	1 cut(s)	3778
AjnI	CCWGG	9 cut(s)	210, 1040, 1363, 1470, 1587, 1651, 1916, 2106, 2795
AjuI	GAANNNNNNNTTGG	2 cut(s)	3788, 3820
AleI	CACNNNNGTG	1 cut(s)	3271
AloI	GAACNNNNNNTCC	2 cut(s)	1021, 1053
Alw21I	GWGCWC	3 cut(s)	1894, 2047, 3355
AlwI	GGATC	9 cut(s)	229, 235, 550, 2361, 2700, 2713, 2839, 2852, 3445
AlwNI	CAGNNNCTG	1 cut(s)	1370
Ama87I	CYCGRG	4 cut(s)	633, 2148, 3231, 3408
Aor51HI	AGCGCT	1 cut(s)	8
ApeKI	GCWGC	7 cut(s)	4, 2234, 2815, 2945, 3236, 3327, 3944
ApoI	RAATTY	3 cut(s)	946, 1400, 1608
ArsI	GACNNNNNNTTYG	6 cut(s)	82, 114, 2876, 2908, 3845, 3877
AseI	ATTAAT	3 cut(s)	1661, 2169, 2916
AsiGI	ACCGGT	2 cut(s)	2773, 3570
Asp700I	GAANNNNTTC	1 cut(s)	256
AspLEI	GCGC	4 cut(s)	9, 228, 1970, 2736
AsuHPI	GGTGA	8 cut(s)	634, 700, 821, 1353, 2048, 2741, 2819, 2933
AsuII	TTCGAA	3 cut(s)	1100, 2627, 3602
AvaI	CYCGRG	4 cut(s)	633, 2148, 3231, 3408
AvaII	GGWCC	8 cut(s)	1066, 1367, 1585, 2938, 3133, 3143, 3263, 3895
AxyI	CCTNAGG	2 cut(s)	189, 2970
BaeGI	GKGCMC	3 cut(s)	187, 2304, 3057
BalI	TGGCCA	5 cut(s)	1592, 2618, 2672, 3105, 3530
BamHI	GGATCC	2 cut(s)	2705, 2844
BanI	GGYRCC	2 cut(s)	3424, 3911
BanII	GRGCYC	1 cut(s)	3355
BauI	CACGAG	1 cut(s)	3834
BbsI	GAAGAC	2 cut(s)	455, 2985
Bbv12I	GWGCWC	3 cut(s)	1894, 2047, 3355
BbvCI	CCTCAGC	2 cut(s)	279, 1728
BbvI	GCAGC	7 cut(s)	16, 2246, 2827, 2957, 3223, 3339, 3931
BceAI	ACGGC	2 cut(s)	159, 1092
BcgI	CGANNNNNNTGC	4 cut(s)	1206, 1240, 3770, 3804
BciT130I	CCWGG	9 cut(s)	212, 1042, 1365, 1472, 1589, 1653, 1918, 2108, 2797
BciVI	GTATCC	1 cut(s)	1934
BclI	TGATCA	1 cut(s)	664
BcuI	ACTAGT	1 cut(s)	3512
BfmI	CTRYAG	6 cut(s)	31, 300, 342, 474, 3269, 3815
BfoI	RGCGCY	2 cut(s)	10, 2737
BfrI	CTTAAG	1 cut(s)	1124
BfuAI	ACCTGC	1 cut(s)	3436
BfuI	GTATCC	1 cut(s)	1934
BglI	GCCNNNNNGGC	1 cut(s)	162
BglII	AGATCT	1 cut(s)	133
BisI	GCNGC	7 cut(s)	5, 2235, 2816, 2946, 3237, 3328, 3945
BlsI	GCNGC	7 cut(s)	6, 2236, 2817, 2947, 3238, 3329, 3946
BmcAI	AGTACT	1 cut(s)	3617
Bme1390I	CCNGG	9 cut(s)	212, 1042, 1365, 1472, 1589, 1653, 1918, 2108, 2797
Bme18I	GGWCC	8 cut(s)	1066, 1367, 1585, 2938, 3133, 3143, 3263, 3895
BmeRI	GACNNNNNGTC	2 cut(s)	1424, 3931
BmeT110I	CYCGRG	4 cut(s)	633, 2148, 3231, 3408
BmgBI	CACGTC	1 cut(s)	3778
BmrFI	CCNGG	9 cut(s)	212, 1042, 1365, 1472, 1589, 1653, 1918, 2108, 2797
BmrI	ACTGGG	1 cut(s)	3138
BmuI	ACTGGG	1 cut(s)	3138
BpiI	GAAGAC	2 cut(s)	455, 2985
BplI	GAGNNNNNCTC	4 cut(s)	1274, 1306, 4055, 4087
BpmI	CTGGAG	8 cut(s)	114, 897, 2406, 2818, 3481, 3612, 3640, 4044
Bpu10I	CCTNAGC	2 cut(s)	279, 1728
Bpu14I	TTCGAA	3 cut(s)	1100, 2627, 3602
BpuEI	CTTGAG	2 cut(s)	1586, 3914
Bsa29I	ATCGAT	1 cut(s)	525
BsaAI	YACGTR	1 cut(s)	555
BsaBI	GATNNNNATC	1 cut(s)	239
BsaHI	GRCGYC	1 cut(s)	1425
BsaI	GGTCTC	6 cut(s)	609, 1136, 1180, 1534, 1929, 4019
BsaJI	CCNNGG	7 cut(s)	404, 1224, 1470, 1581, 1917, 2031, 2278
BsaWI	WCCGGW	6 cut(s)	1231, 1809, 2773, 3260, 3477, 3570
BsaXI	ACNNNNNCTCC	6 cut(s)	734, 764, 1021, 1051, 2791, 2821
Bse118I	RCCGGY	3 cut(s)	2773, 2878, 3570
Bse1I	ACTGG	4 cut(s)	325, 510, 3133, 3623
Bse21I	CCTNAGG	2 cut(s)	189, 2970
Bse3DI	GCAATG	2 cut(s)	614, 1157
Bse8I	GATNNNNATC	1 cut(s)	239
BseBI	CCWGG	9 cut(s)	212, 1042, 1365, 1472, 1589, 1653, 1918, 2108, 2797
BseCI	ATCGAT	1 cut(s)	525
BseDI	CCNNGG	7 cut(s)	404, 1224, 1470, 1581, 1917, 2031, 2278
BseGI	GGATG	8 cut(s)	202, 798, 1348, 1383, 2649, 2839, 3664, 4081
BseJI	GATNNNNATC	1 cut(s)	239
BseMI	GCAATG	2 cut(s)	614, 1157
BseNI	ACTGG	4 cut(s)	325, 510, 3133, 3623
BseRI	GAGGAG	8 cut(s)	362, 755, 2534, 2767, 3212, 3345, 3446, 3566
BseSI	GKGCMC	3 cut(s)	187, 2304, 3057
BseX3I	CGGCCG	1 cut(s)	2880
BseXI	GCAGC	7 cut(s)	16, 2246, 2827, 2957, 3223, 3339, 3931
BseYI	CCCAGC	2 cut(s)	1830, 3588
BsgI	GTGCAG	4 cut(s)	1455, 2270, 3346, 3890
Bsh1236I	CGCG	1 cut(s)	547
Bsh1285I	CGRYCG	4 cut(s)	2774, 2879, 2883, 3598
BshNI	GGYRCC	2 cut(s)	3424, 3911
BshTI	ACCGGT	2 cut(s)	2773, 3570
BshVI	ATCGAT	1 cut(s)	525
BsiEI	CGRYCG	4 cut(s)	2774, 2879, 2883, 3598
BsiHKAI	GWGCWC	3 cut(s)	1894, 2047, 3355
BsiHKCI	CYCGRG	4 cut(s)	633, 2148, 3231, 3408
BsiSI	CCGG	8 cut(s)	157, 1232, 1810, 2774, 2879, 3261, 3478, 3571
BslFI	GGGAC	9 cut(s)	368, 379, 1079, 1366, 2951, 3129, 3146, 3161, 3959
BsmFI	GGGAC	9 cut(s)	368, 379, 1079, 1366, 2951, 3129, 3146, 3161, 3959
BsmI	GAATGC	1 cut(s)	871
Bso31I	GGTCTC	6 cut(s)	609, 1136, 1180, 1534, 1929, 4019
BsoBI	CYCGRG	4 cut(s)	633, 2148, 3231, 3408
Bsp119I	TTCGAA	3 cut(s)	1100, 2627, 3602
Bsp1286I	GDGCHC	6 cut(s)	187, 1894, 2047, 2304, 3057, 3355
Bsp1407I	TGTACA	1 cut(s)	1566
Bsp19I	CCATGG	1 cut(s)	2031
BspACI	CCGC	2 cut(s)	459, 3770
BspDI	ATCGAT	1 cut(s)	525
BspFNI	CGCG	1 cut(s)	547
BspHI	TCATGA	1 cut(s)	2439
BspMAI	CTGCAG	2 cut(s)	304, 3273
BspMI	ACCTGC	1 cut(s)	3436
BspPI	GGATC	9 cut(s)	229, 235, 550, 2361, 2700, 2713, 2839, 2852, 3445
BspT104I	TTCGAA	3 cut(s)	1100, 2627, 3602
BspT107I	GGYRCC	2 cut(s)	3424, 3911
BspTI	CTTAAG	1 cut(s)	1124
BspTNI	GGTCTC	6 cut(s)	609, 1136, 1180, 1534, 1929, 4019
BsrBI	CCGCTC	1 cut(s)	3772
BsrDI	GCAATG	2 cut(s)	614, 1157
BsrFI	RCCGGY	3 cut(s)	2773, 2878, 3570
BsrGI	TGTACA	1 cut(s)	1566
BsrI	ACTGG	4 cut(s)	325, 510, 3133, 3623
BssAI	RCCGGY	3 cut(s)	2773, 2878, 3570
BssECI	CCNNGG	7 cut(s)	404, 1224, 1470, 1581, 1917, 2031, 2278
BssNI	GRCGYC	1 cut(s)	1425
BssSI	CACGAG	1 cut(s)	3834
BssT1I	CCWWGG	4 cut(s)	404, 1581, 2031, 2278
Bst2BI	CACGAG	1 cut(s)	3834
Bst2UI	CCWGG	9 cut(s)	212, 1042, 1365, 1472, 1589, 1653, 1918, 2108, 2797
Bst4CI	ACNGT	8 cut(s)	32, 604, 1070, 1121, 1855, 2447, 2888, 3857
Bst6I	CTCTTC	4 cut(s)	224, 262, 1275, 3041
BstACI	GRCGYC	1 cut(s)	1425
BstAFI	CTTAAG	1 cut(s)	1124
BstAUI	TGTACA	1 cut(s)	1566
BstBAI	YACGTR	1 cut(s)	555
BstBI	TTCGAA	3 cut(s)	1100, 2627, 3602
BstC8I	GCNNGC	9 cut(s)	418, 595, 1262, 1725, 2285, 2959, 3564, 3736, 3873
BstDSI	CCRYGG	1 cut(s)	2031
BstENI	CCTNNNNNAGG	1 cut(s)	3163
BstF5I	GGATG	8 cut(s)	202, 798, 1348, 1383, 2649, 2839, 3664, 4081
BstFNI	CGCG	1 cut(s)	547
BstH2I	RGCGCY	2 cut(s)	10, 2737
BstHHI	GCGC	4 cut(s)	9, 228, 1970, 2736
BstMCI	CGRYCG	4 cut(s)	2774, 2879, 2883, 3598
BstMWI	GCNNNNNNNGC	7 cut(s)	162, 344, 1720, 2042, 2321, 2954, 3872
BstNI	CCWGG	9 cut(s)	212, 1042, 1365, 1472, 1589, 1653, 1918, 2108, 2797
BstNSI	RCATGY	2 cut(s)	2606, 3031
BstSCI	CCNGG	9 cut(s)	210, 1040, 1363, 1470, 1587, 1651, 1916, 2106, 2795
BstSFI	CTRYAG	6 cut(s)	31, 300, 342, 474, 3269, 3815
BstSLI	GKGCMC	3 cut(s)	187, 2304, 3057
BstUI	CGCG	1 cut(s)	547
BstV1I	GCAGC	7 cut(s)	16, 2246, 2827, 2957, 3223, 3339, 3931
BstV2I	GAAGAC	2 cut(s)	455, 2985
BstX2I	RGATCY	4 cut(s)	133, 234, 2705, 2844
BstXI	CCANNNNNNTGG	3 cut(s)	1588, 3526, 3538
BstYI	RGATCY	4 cut(s)	133, 234, 2705, 2844
BstZI	CGGCCG	1 cut(s)	2880
Bsu15I	ATCGAT	1 cut(s)	525
Bsu36I	CCTNAGG	2 cut(s)	189, 2970
BsuI	GTATCC	1 cut(s)	1934
BsuTUI	ATCGAT	1 cut(s)	525
BtgI	CCRYGG	1 cut(s)	2031
BtgZI	GCGATG	1 cut(s)	2487
BtrI	CACGTC	1 cut(s)	3778
BtsCI	GGATG	8 cut(s)	202, 798, 1348, 1383, 2649, 2839, 3664, 4081
BtsI	GCAGTG	6 cut(s)	667, 2258, 3266, 3278, 3531, 3873
BveI	ACCTGC	1 cut(s)	3436
Cac8I	GCNNGC	9 cut(s)	418, 595, 1262, 1725, 2285, 2959, 3564, 3736, 3873
CaiI	CAGNNNCTG	1 cut(s)	1370
CciI	TCATGA	1 cut(s)	2439
CfoI	GCGC	4 cut(s)	9, 228, 1970, 2736
Cfr10I	RCCGGY	3 cut(s)	2773, 2878, 3570
ClaI	ATCGAT	1 cut(s)	525
CsiI	ACCWGGT	1 cut(s)	1363
Csp6I	GTAC	7 cut(s)	768, 1567, 2514, 3616, 3693, 3951, 4087
CspAI	ACCGGT	2 cut(s)	2773, 3570
CspCI	CAANNNNNGTGG	2 cut(s)	3873, 3908
CviQI	GTAC	7 cut(s)	768, 1567, 2514, 3616, 3693, 3951, 4087
DraI	TTTAAA	1 cut(s)	2683
DriI	GACNNNNNGTC	2 cut(s)	1424, 3931
EaeI	YGGCCR	6 cut(s)	1590, 2616, 2670, 2880, 3103, 3528
EagI	CGGCCG	1 cut(s)	2880
Eam1104I	CTCTTC	4 cut(s)	224, 262, 1275, 3041
Eam1105I	GACNNNNNGTC	2 cut(s)	1424, 3931
EarI	CTCTTC	4 cut(s)	224, 262, 1275, 3041
Ecl136II	GAGCTC	1 cut(s)	3353
EclXI	CGGCCG	1 cut(s)	2880
Eco130I	CCWWGG	4 cut(s)	404, 1581, 2031, 2278
Eco24I	GRGCYC	1 cut(s)	3355
Eco31I	GGTCTC	6 cut(s)	609, 1136, 1180, 1534, 1929, 4019
Eco47I	GGWCC	8 cut(s)	1066, 1367, 1585, 2938, 3133, 3143, 3263, 3895
Eco47III	AGCGCT	1 cut(s)	8
Eco52I	CGGCCG	1 cut(s)	2880
Eco53kI	GAGCTC	1 cut(s)	3353
Eco57I	CTGAAG	1 cut(s)	243
Eco81I	CCTNAGG	2 cut(s)	189, 2970
Eco88I	CYCGRG	4 cut(s)	633, 2148, 3231, 3408
EcoICRI	GAGCTC	1 cut(s)	3353
EcoNI	CCTNNNNNAGG	1 cut(s)	3163
EcoO109I	RGGNCCY	4 cut(s)	37, 1367, 1585, 3133
EcoRII	CCWGG	9 cut(s)	210, 1040, 1363, 1470, 1587, 1651, 1916, 2106, 2795
EcoT14I	CCWWGG	4 cut(s)	404, 1581, 2031, 2278
EcoT22I	ATGCAT	3 cut(s)	1144, 1204, 1350
EcoT38I	GRGCYC	1 cut(s)	3355
ErhI	CCWWGG	4 cut(s)	404, 1581, 2031, 2278
FalI	AAGNNNNNCTT	4 cut(s)	51, 83, 1788, 1820
FaqI	GGGAC	9 cut(s)	368, 379, 1079, 1366, 2951, 3129, 3146, 3161, 3959
FauI	CCCGC	1 cut(s)	3777
FauNDI	CATATG	1 cut(s)	3139
FbaI	TGATCA	1 cut(s)	664
FblI	GTMKAC	2 cut(s)	882, 3377
Fnu4HI	GCNGC	7 cut(s)	5, 2235, 2816, 2946, 3237, 3328, 3945
FokI	GGATG	8 cut(s)	209, 805, 1335, 1390, 2656, 2846, 3671, 4088
FriOI	GRGCYC	1 cut(s)	3355
Fsp4HI	GCNGC	7 cut(s)	5, 2235, 2816, 2946, 3237, 3328, 3945
FspI	TGCGCA	1 cut(s)	1969
GlaI	GCGC	4 cut(s)	8, 227, 1969, 2735
GluI	GCNGC	7 cut(s)	5, 2235, 2816, 2946, 3237, 3328, 3945
GsaI	CCCAGC	2 cut(s)	1834, 3592
GsuI	CTGGAG	8 cut(s)	114, 897, 2406, 2818, 3481, 3612, 3640, 4044
HaeII	RGCGCY	2 cut(s)	10, 2737
HapII	CCGG	8 cut(s)	157, 1232, 1810, 2774, 2879, 3261, 3478, 3571
HhaI	GCGC	4 cut(s)	9, 228, 1970, 2736
Hin1I	GRCGYC	1 cut(s)	1425
Hin6I	GCGC	4 cut(s)	7, 226, 1968, 2734
HinP1I	GCGC	4 cut(s)	7, 226, 1968, 2734
HincII	GTYRAC	2 cut(s)	141, 1452
HindII	GTYRAC	2 cut(s)	141, 1452
HindIII	AAGCTT	3 cut(s)	726, 1712, 2118
HpaII	CCGG	8 cut(s)	157, 1232, 1810, 2774, 2879, 3261, 3478, 3571
HphI	GGTGA	8 cut(s)	634, 700, 821, 1353, 2048, 2741, 2819, 2933
Hpy166II	GTNNAC	8 cut(s)	141, 883, 1452, 1567, 3214, 3266, 3378, 3895
Hpy8I	GTNNAC	8 cut(s)	141, 883, 1452, 1567, 3214, 3266, 3378, 3895
Hpy99I	CGWCG	4 cut(s)	1095, 1722, 3488, 3782
HpyAV	CCTTC	8 cut(s)	656, 1055, 1324, 1539, 1814, 1967, 2748, 3684
HpyCH4III	ACNGT	8 cut(s)	32, 604, 1070, 1121, 1855, 2447, 2888, 3857
HpyCH4IV	ACGT	8 cut(s)	554, 1036, 1410, 1425, 1560, 3374, 3486, 3777
HpyF10VI	GCNNNNNNNGC	7 cut(s)	162, 344, 1720, 2042, 2321, 2954, 3872
HpySE526I	ACGT	8 cut(s)	554, 1036, 1410, 1425, 1560, 3374, 3486, 3777
Hsp92I	GRCGYC	1 cut(s)	1425
HspAI	GCGC	4 cut(s)	7, 226, 1968, 2734
KflI	GGGWCCC	1 cut(s)	3133
Ksp22I	TGATCA	1 cut(s)	664
LmnI	GCTCC	8 cut(s)	801, 1897, 2050, 3350, 3358, 3770, 3777, 4063
Lsp1109I	GCAGC	7 cut(s)	16, 2246, 2827, 2957, 3223, 3339, 3931
MabI	ACCWGGT	1 cut(s)	1363
MaeII	ACGT	8 cut(s)	554, 1036, 1410, 1425, 1560, 3374, 3486, 3777
MaeIII	GTNAC	9 cut(s)	959, 1556, 1632, 1868, 2661, 3412, 3580, 3783, 3851
MbiI	CCGCTC	1 cut(s)	3772
MflI	RGATCY	4 cut(s)	133, 234, 2705, 2844
MhlI	GDGCHC	6 cut(s)	187, 1894, 2047, 2304, 3057, 3355
MlsI	TGGCCA	5 cut(s)	1592, 2618, 2672, 3105, 3530
MluNI	TGGCCA	5 cut(s)	1592, 2618, 2672, 3105, 3530
MlyI	GAGTC	8 cut(s)	315, 888, 1593, 1971, 2669, 3013, 3631, 3999
MmeI	TCCRAC	6 cut(s)	520, 770, 1233, 1951, 2618, 3328
Mox20I	TGGCCA	5 cut(s)	1592, 2618, 2672, 3105, 3530
Mph1103I	ATGCAT	3 cut(s)	1144, 1204, 1350
MroXI	GAANNNNTTC	1 cut(s)	256
MscI	TGGCCA	5 cut(s)	1592, 2618, 2672, 3105, 3530
MslI	CAYNNNNRTG	7 cut(s)	273, 1197, 2601, 2746, 3111, 3271, 3536
Msp20I	TGGCCA	5 cut(s)	1592, 2618, 2672, 3105, 3530
MspA1I	CMGCKG	1 cut(s)	2948
MspCI	CTTAAG	1 cut(s)	1124
MspI	CCGG	8 cut(s)	157, 1232, 1810, 2774, 2879, 3261, 3478, 3571
MspR9I	CCNGG	9 cut(s)	212, 1042, 1365, 1472, 1589, 1653, 1918, 2108, 2797
Mva1269I	GAATGC	1 cut(s)	871
MvaI	CCWGG	9 cut(s)	212, 1042, 1365, 1472, 1589, 1653, 1918, 2108, 2797
MvnI	CGCG	1 cut(s)	547
MwoI	GCNNNNNNNGC	7 cut(s)	162, 344, 1720, 2042, 2321, 2954, 3872
NcoI	CCATGG	1 cut(s)	2031
NdeI	CATATG	1 cut(s)	3139
NmuCI	GTSAC	4 cut(s)	959, 2661, 3580, 3851
NsbI	TGCGCA	1 cut(s)	1969
NsiI	ATGCAT	3 cut(s)	1144, 1204, 1350
NspI	RCATGY	2 cut(s)	2606, 3031
NspV	TTCGAA	3 cut(s)	1100, 2627, 3602
OliI	CACNNNNGTG	1 cut(s)	3271
PaeR7I	CTCGAG	2 cut(s)	2148, 3231
PagI	TCATGA	1 cut(s)	2439
PaqCI	CACCTGC	1 cut(s)	3436
PcsI	WCGNNNNNNNCGW	1 cut(s)	551
PctI	GAATGC	1 cut(s)	871
PdmI	GAANNNNTTC	1 cut(s)	256
PflMI	CCANNNNNTGG	2 cut(s)	806, 3635
PfoI	TCCNGGA	3 cut(s)	1040, 2106, 2795
PinAI	ACCGGT	2 cut(s)	2773, 3570
PkrI	GCNGC	7 cut(s)	6, 2236, 2817, 2947, 3238, 3329, 3946
Ple19I	CGATCG	1 cut(s)	3598
PleI	GAGTC	8 cut(s)	314, 887, 1593, 1971, 2668, 3012, 3630, 3999
PpsI	GAGTC	8 cut(s)	314, 887, 1593, 1971, 2668, 3012, 3630, 3999
Ppu21I	YACGTR	1 cut(s)	555
PpuMI	RGGWCCY	3 cut(s)	1367, 1585, 3133
PshBI	ATTAAT	3 cut(s)	1661, 2169, 2916
Psp124BI	GAGCTC	1 cut(s)	3355
Psp1406I	AACGTT	1 cut(s)	1036
Psp5II	RGGWCCY	3 cut(s)	1367, 1585, 3133
Psp6I	CCWGG	9 cut(s)	210, 1040, 1363, 1470, 1587, 1651, 1916, 2106, 2795
PspFI	CCCAGC	2 cut(s)	1830, 3588
PspGI	CCWGG	9 cut(s)	210, 1040, 1363, 1470, 1587, 1651, 1916, 2106, 2795
PspPPI	RGGWCCY	3 cut(s)	1367, 1585, 3133
PspXI	VCTCGAGB	2 cut(s)	2148, 3231
PstI	CTGCAG	2 cut(s)	304, 3273
PstNI	CAGNNNCTG	1 cut(s)	1370
PsuI	RGATCY	4 cut(s)	133, 234, 2705, 2844
PvuI	CGATCG	1 cut(s)	3598
PvuII	CAGCTG	1 cut(s)	2948
RsaI	GTAC	7 cut(s)	769, 1568, 2515, 3617, 3694, 3952, 4088
RsaNI	GTAC	7 cut(s)	768, 1567, 2514, 3616, 3693, 3951, 4087
RseI	CAYNNNNRTG	7 cut(s)	273, 1197, 2601, 2746, 3111, 3271, 3536
SacI	GAGCTC	1 cut(s)	3355
SatI	GCNGC	7 cut(s)	5, 2235, 2816, 2946, 3237, 3328, 3945
ScaI	AGTACT	1 cut(s)	3617
SchI	GAGTC	8 cut(s)	315, 888, 1593, 1971, 2669, 3013, 3631, 3999
ScrFI	CCNGG	9 cut(s)	212, 1042, 1365, 1472, 1589, 1653, 1918, 2108, 2797
SduI	GDGCHC	6 cut(s)	187, 1894, 2047, 2304, 3057, 3355
SexAI	ACCWGGT	1 cut(s)	1363
SfcI	CTRYAG	6 cut(s)	31, 300, 342, 474, 3269, 3815
Sfr274I	CTCGAG	2 cut(s)	2148, 3231
SfuI	TTCGAA	3 cut(s)	1100, 2627, 3602
SinI	GGWCC	8 cut(s)	1066, 1367, 1585, 2938, 3133, 3143, 3263, 3895
SlaI	CTCGAG	2 cut(s)	2148, 3231
SmiMI	CAYNNNNRTG	7 cut(s)	273, 1197, 2601, 2746, 3111, 3271, 3536
SmlI	CTYRAG	5 cut(s)	1124, 1601, 2148, 3231, 3929
SmoI	CTYRAG	5 cut(s)	1124, 1601, 2148, 3231, 3929
SpeI	ACTAGT	1 cut(s)	3512
SsiI	CCGC	2 cut(s)	459, 3770
SspI	AATATT	1 cut(s)	3991
SstI	GAGCTC	1 cut(s)	3355
StyD4I	CCNGG	9 cut(s)	210, 1040, 1363, 1470, 1587, 1651, 1916, 2106, 2795
StyI	CCWWGG	4 cut(s)	404, 1581, 2031, 2278
TaaI	ACNGT	8 cut(s)	32, 604, 1070, 1121, 1855, 2447, 2888, 3857
TaiI	ACGT	8 cut(s)	557, 1039, 1413, 1428, 1563, 3377, 3489, 3780
TaqII	GACCGA	1 cut(s)	1558
TatI	WGTACW	4 cut(s)	767, 1566, 2513, 3615
TseFI	GTSAC	4 cut(s)	959, 2661, 3580, 3851
TseI	GCWGC	7 cut(s)	4, 2234, 2815, 2945, 3236, 3327, 3944
Tsp45I	GTSAC	4 cut(s)	959, 2661, 3580, 3851
TspGWI	ACGGA	5 cut(s)	233, 365, 1703, 3348, 3968
Van91I	CCANNNNNTGG	2 cut(s)	806, 3635
Vha464I	CTTAAG	1 cut(s)	1124
VpaK11BI	GGWCC	8 cut(s)	1066, 1367, 1585, 2938, 3133, 3143, 3263, 3895
VspI	ATTAAT	3 cut(s)	1661, 2169, 2916
XagI	CCTNNNNNAGG	1 cut(s)	3163
XapI	RAATTY	3 cut(s)	946, 1400, 1608
XbaI	TCTAGA	2 cut(s)	694, 3287
XceI	RCATGY	2 cut(s)	2606, 3031
XhoI	CTCGAG	2 cut(s)	2148, 3231
XmiI	GTMKAC	2 cut(s)	882, 3377
XmnI	GAANNNNTTC	1 cut(s)	256
ZraI	GACGTC	1 cut(s)	1426
ZrmI	AGTACT	1 cut(s)	3617
Zsp2I	ATGCAT	3 cut(s)	1144, 1204, 1350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.