Rmu_sc0009812.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009812.1
OG0018630
Physical Location & Seq
Reverse (-)
24488 .. 25360
873 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009812.1_g000004.1.cds

Sequence Viewer

Length: 462 bp
ctgccaatctctccctcgcacgctcgatctcactctcatgaacctcagtccctcaatccctttcaccctctcaagctcacacacactctcatcctcctgcgattccggcaaagcaagtttgggtatggaagttttgggtatagaagtttgggtaaagtaagtttgcaaagcatagacgtcctcaagtttggttcgatttccaattcttcaagcttgggatctatcaaagaatcaactgactggctcattaccagacttggggagcttgcgaaaccttctgtatcttacaacttgctggaaggcgctataccaccaaccttgggttcactagtgaatcttcggcaactgtatctctacttcaataggttatcaggctcaattcctgatgaattgggaaatctcagcaatcttactacattgttcgttctctgctcactgctcactctgctgagaccaccttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

16.88

Weight (kDa)

9.77

Isoelectric Point (pI)

42.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 180
AclWI GGATC 1 cut(s) 226
AcyI GRCGYC 1 cut(s) 177
AfiI CCNNNNNNNGG 2 cut(s) 258, 320
AgsI TTSAA 2 cut(s) 210, 361
AhlI ACTAGT 1 cut(s) 328
AjuI GAANNNNNNNTTGG 2 cut(s) 307, 339
AluBI AGCT 3 cut(s) 76, 213, 265
AluI AGCT 3 cut(s) 76, 213, 265
Alw26I GTCTC 1 cut(s) 445
AlwI GGATC 1 cut(s) 226
AspLEI GCGC 1 cut(s) 305
AsuHPI GGTGA 1 cut(s) 56
BarI GAAGNNNNNNTAC 4 cut(s) 291, 323, 341, 373
BcoDI GTCTC 1 cut(s) 445
BcuI ACTAGT 1 cut(s) 328
BfaI CTAG 1 cut(s) 329
BfoI RGCGCY 1 cut(s) 306
BpuEI CTTGAG 2 cut(s) 56, 167
BsaHI GRCGYC 1 cut(s) 177
BsaI GGTCTC 1 cut(s) 445
BsaJI CCNNGG 1 cut(s) 318
Bsc4I CCNNNNNNNGG 2 cut(s) 258, 320
Bse1I ACTGG 1 cut(s) 245
BseDI CCNNGG 1 cut(s) 318
BseGI GGATG 1 cut(s) 90
BseLI CCNNNNNNNGG 2 cut(s) 258, 320
BseMII CTCAG 3 cut(s) 59, 415, 440
BseNI ACTGG 1 cut(s) 245
BsiSI CCGG 1 cut(s) 106
BslFI GGGAC 1 cut(s) 34
BslI CCNNNNNNNGG 2 cut(s) 258, 320
BsmAI GTCTC 1 cut(s) 445
BsmFI GGGAC 1 cut(s) 34
Bso31I GGTCTC 1 cut(s) 445
Bsp143I GATC 2 cut(s) 26, 218
BspCNI CTCAG 3 cut(s) 58, 414, 441
BspHI TCATGA 1 cut(s) 37
BspPI GGATC 1 cut(s) 226
BspTNI GGTCTC 1 cut(s) 445
BsrI ACTGG 1 cut(s) 245
BssECI CCNNGG 1 cut(s) 318
BssMI GATC 2 cut(s) 26, 218
BssNI GRCGYC 1 cut(s) 177
BssT1I CCWWGG 1 cut(s) 318
Bst4CI ACNGT 1 cut(s) 348
BstACI GRCGYC 1 cut(s) 177
BstC8I GCNNGC 2 cut(s) 21, 267
BstDEI CTNAG 3 cut(s) 45, 401, 449
BstF5I GGATG 1 cut(s) 90
BstH2I RGCGCY 1 cut(s) 306
BstHHI GCGC 1 cut(s) 305
BstKTI GATC 2 cut(s) 29, 221
BstMAI GTCTC 1 cut(s) 445
BstMBI GATC 2 cut(s) 26, 218
BstMWI GCNNNNNNNGC 2 cut(s) 106, 445
BstX2I RGATCY 1 cut(s) 218
BstYI RGATCY 1 cut(s) 218
BtsCI GGATG 1 cut(s) 90
BtsI GCAGTG 1 cut(s) 434
BtsIMutI CAGTG 1 cut(s) 434
Cac8I GCNNGC 2 cut(s) 21, 267
CciI TCATGA 1 cut(s) 37
CfoI GCGC 1 cut(s) 305
CspCI CAANNNNNGTGG 2 cut(s) 300, 335
CviAII CATG 1 cut(s) 38
CviJI RGCY 5 cut(s) 76, 213, 244, 265, 375
CviKI_1 RGCY 5 cut(s) 76, 213, 244, 265, 375
DdeI CTNAG 3 cut(s) 45, 401, 449
DpnI GATC 2 cut(s) 28, 220
DpnII GATC 2 cut(s) 26, 218
Eco130I CCWWGG 1 cut(s) 318
Eco31I GGTCTC 1 cut(s) 445
EcoT14I CCWWGG 1 cut(s) 318
ErhI CCWWGG 1 cut(s) 318
FaeI CATG 1 cut(s) 41
FaiI YATR 5 cut(s) 39, 126, 141, 173, 308
FaqI GGGAC 1 cut(s) 34
FatI CATG 1 cut(s) 37
FokI GGATG 1 cut(s) 77
FspBI CTAG 1 cut(s) 329
GlaI GCGC 1 cut(s) 304
HaeII RGCGCY 1 cut(s) 306
HapII CCGG 1 cut(s) 106
HhaI GCGC 1 cut(s) 305
Hin1I GRCGYC 1 cut(s) 177
Hin1II CATG 1 cut(s) 41
Hin6I GCGC 1 cut(s) 303
HinP1I GCGC 1 cut(s) 303
HindIII AAGCTT 1 cut(s) 211
HinfI GANTC 3 cut(s) 102, 230, 334
HpaII CCGG 1 cut(s) 106
HphI GGTGA 1 cut(s) 56
Hpy166II GTNNAC 1 cut(s) 326
Hpy188III TCNNGA 2 cut(s) 38, 383
Hpy8I GTNNAC 1 cut(s) 326
HpyAV CCTTC 2 cut(s) 285, 293
HpyCH4III ACNGT 1 cut(s) 348
HpyCH4IV ACGT 1 cut(s) 177
HpyCH4V TGCA 1 cut(s) 166
HpyF10VI GCNNNNNNNGC 2 cut(s) 106, 445
HpyF3I CTNAG 3 cut(s) 45, 401, 449
HpySE526I ACGT 1 cut(s) 177
Hsp92I GRCGYC 1 cut(s) 177
Hsp92II CATG 1 cut(s) 41
HspAI GCGC 1 cut(s) 303
Kzo9I GATC 2 cut(s) 26, 218
LmnI GCTCC 1 cut(s) 262
LpnPI CCDG 7 cut(s) 110, 119, 226, 265, 281, 357, 396
MaeI CTAG 1 cut(s) 329
MaeII ACGT 1 cut(s) 177
MalI GATC 2 cut(s) 28, 220
MboI GATC 2 cut(s) 26, 218
MboII GAAGA 2 cut(s) 198, 329
MflI RGATCY 1 cut(s) 218
MluCI AATT 3 cut(s) 202, 378, 389
MnlI CCTC 6 cut(s) 25, 54, 62, 78, 104, 191
MseI TTAA 1 cut(s) 460
MslI CAYNNNNRTG 1 cut(s) 36
MspI CCGG 1 cut(s) 106
MwoI GCNNNNNNNGC 2 cut(s) 106, 445
NdeII GATC 2 cut(s) 26, 218
NlaIII CATG 1 cut(s) 41
PagI TCATGA 1 cut(s) 37
PfeI GAWTC 3 cut(s) 102, 230, 334
PsuI RGATCY 1 cut(s) 218
RseI CAYNNNNRTG 1 cut(s) 36
SaqAI TTAA 1 cut(s) 460
Sau3AI GATC 2 cut(s) 26, 218
SetI ASST 9 cut(s) 46, 78, 180, 215, 267, 277, 320, 368, 460
SmiMI CAYNNNNRTG 1 cut(s) 36
SmlI CTYRAG 2 cut(s) 71, 182
SmoI CTYRAG 2 cut(s) 71, 182
SpeI ACTAGT 1 cut(s) 328
Sse9I AATT 3 cut(s) 202, 378, 389
SspMI CTAG 1 cut(s) 329
StyI CCWWGG 1 cut(s) 318
TaaI ACNGT 1 cut(s) 348
TaiI ACGT 1 cut(s) 180
TaqI TCGA 2 cut(s) 25, 194
TasI AATT 3 cut(s) 202, 378, 389
TfiI GAWTC 3 cut(s) 102, 230, 334
Tru1I TTAA 1 cut(s) 460
Tru9I TTAA 1 cut(s) 460
TscAI CASTG 1 cut(s) 441
TspDTI ATGAA 2 cut(s) 54, 402
TspRI CASTG 1 cut(s) 441
XspI CTAG 1 cut(s) 329
ZraI GACGTC 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.