Gibberellin 3-beta-dioxygenase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr6g0307081 |
| rosa_multiflora | Rmu_sc0000369.1_g000017 Rmu_sc0002541.1_g000010 Rmu_sc0009812.1_g000004 Rmu_sc0010906.1_g000003 Rmu_ssc0000322.1_g000012 |
| rosa_roxburghii | Rroxscaffold_178G00437380 Rroxscaffold_5G00361640 Rroxscaffold_7G00205550 |
| rosa_samantha | Rh7DG397600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 42 |
| AccB1I | GGYRCC | 1 cut(s) | 220 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 203 |
| AcoI | YGGCCR | 1 cut(s) | 299 |
| AcsI | RAATTY | 3 cut(s) | 76, 172, 254 |
| AcyI | GRCGYC | 1 cut(s) | 39 |
| AdeI | CACNNNGTG | 1 cut(s) | 145 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 203 |
| AgsI | TTSAA | 1 cut(s) | 84 |
| AluBI | AGCT | 1 cut(s) | 87 |
| AluI | AGCT | 1 cut(s) | 87 |
| AoxI | GGCC | 1 cut(s) | 299 |
| ApoI | RAATTY | 3 cut(s) | 76, 172, 254 |
| AsuHPI | GGTGA | 1 cut(s) | 278 |
| AsuII | TTCGAA | 1 cut(s) | 74 |
| BalI | TGGCCA | 1 cut(s) | 301 |
| BanI | GGYRCC | 1 cut(s) | 220 |
| BccI | CCATC | 1 cut(s) | 197 |
| BmiI | GGNNCC | 1 cut(s) | 222 |
| Bpu14I | TTCGAA | 1 cut(s) | 74 |
| BpuEI | CTTGAG | 2 cut(s) | 29, 244 |
| BsaHI | GRCGYC | 1 cut(s) | 39 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 102, 132 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 203 |
| Bse1I | ACTGG | 1 cut(s) | 197 |
| Bse3DI | GCAATG | 1 cut(s) | 120 |
| BseGI | GGATG | 1 cut(s) | 247 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 203 |
| BseMI | GCAATG | 1 cut(s) | 120 |
| BseNI | ACTGG | 1 cut(s) | 197 |
| BseRI | GAGGAG | 1 cut(s) | 242 |
| BshFI | GGCC | 1 cut(s) | 301 |
| BshNI | GGYRCC | 1 cut(s) | 220 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 203 |
| BsnI | GGCC | 1 cut(s) | 301 |
| Bsp119I | TTCGAA | 1 cut(s) | 74 |
| BspANI | GGCC | 1 cut(s) | 301 |
| BspLI | GGNNCC | 1 cut(s) | 222 |
| BspT104I | TTCGAA | 1 cut(s) | 74 |
| BspT107I | GGYRCC | 1 cut(s) | 220 |
| BsrDI | GCAATG | 1 cut(s) | 120 |
| BsrI | ACTGG | 1 cut(s) | 197 |
| BssNI | GRCGYC | 1 cut(s) | 39 |
| BstACI | GRCGYC | 1 cut(s) | 39 |
| BstBI | TTCGAA | 1 cut(s) | 74 |
| BstC8I | GCNNGC | 2 cut(s) | 104, 129 |
| BstF5I | GGATG | 1 cut(s) | 247 |
| BstNSI | RCATGY | 1 cut(s) | 131 |
| BsuRI | GGCC | 1 cut(s) | 301 |
| BtsCI | GGATG | 1 cut(s) | 247 |
| Cac8I | GCNNGC | 2 cut(s) | 104, 129 |
| CviAII | CATG | 2 cut(s) | 107, 128 |
| CviJI | RGCY | 2 cut(s) | 87, 301 |
| CviKI_1 | RGCY | 2 cut(s) | 87, 301 |
| DraIII | CACNNNGTG | 1 cut(s) | 145 |
| EaeI | YGGCCR | 1 cut(s) | 299 |
| Eco32I | GATATC | 1 cut(s) | 60 |
| EcoRI | GAATTC | 1 cut(s) | 76 |
| EcoRV | GATATC | 1 cut(s) | 60 |
| EcoT22I | ATGCAT | 2 cut(s) | 129, 133 |
| FaeI | CATG | 2 cut(s) | 110, 131 |
| FaiI | YATR | 4 cut(s) | 35, 108, 129, 304 |
| FatI | CATG | 2 cut(s) | 106, 127 |
| FokI | GGATG | 1 cut(s) | 234 |
| HaeIII | GGCC | 1 cut(s) | 301 |
| Hin1I | GRCGYC | 1 cut(s) | 39 |
| Hin1II | CATG | 2 cut(s) | 110, 131 |
| HindIII | AAGCTT | 1 cut(s) | 85 |
| HphI | GGTGA | 1 cut(s) | 278 |
| HpyAV | CCTTC | 1 cut(s) | 286 |
| HpyCH4IV | ACGT | 1 cut(s) | 39 |
| HpyCH4V | TGCA | 4 cut(s) | 28, 127, 131, 191 |
| HpySE526I | ACGT | 1 cut(s) | 39 |
| Hsp92I | GRCGYC | 1 cut(s) | 39 |
| Hsp92II | CATG | 2 cut(s) | 110, 131 |
| LmnI | GCTCC | 2 cut(s) | 110, 182 |
| LpnPI | CCDG | 5 cut(s) | 48, 88, 210, 237, 302 |
| MaeII | ACGT | 1 cut(s) | 39 |
| MboII | GAAGA | 2 cut(s) | 72, 254 |
| MlsI | TGGCCA | 1 cut(s) | 301 |
| MluCI | AATT | 4 cut(s) | 76, 172, 254, 273 |
| MluNI | TGGCCA | 1 cut(s) | 301 |
| MnlI | CCTC | 2 cut(s) | 53, 220 |
| Mox20I | TGGCCA | 1 cut(s) | 301 |
| Mph1103I | ATGCAT | 2 cut(s) | 129, 133 |
| MscI | TGGCCA | 1 cut(s) | 301 |
| MseI | TTAA | 2 cut(s) | 95, 134 |
| Msp20I | TGGCCA | 1 cut(s) | 301 |
| NlaIII | CATG | 2 cut(s) | 110, 131 |
| NlaIV | GGNNCC | 1 cut(s) | 222 |
| NsiI | ATGCAT | 2 cut(s) | 129, 133 |
| NspI | RCATGY | 1 cut(s) | 131 |
| NspV | TTCGAA | 1 cut(s) | 74 |
| PaeI | GCATGC | 1 cut(s) | 131 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 203 |
| PspN4I | GGNNCC | 1 cut(s) | 222 |
| SaqAI | TTAA | 2 cut(s) | 95, 134 |
| SetI | ASST | 3 cut(s) | 42, 89, 291 |
| SfuI | TTCGAA | 1 cut(s) | 74 |
| SmlI | CTYRAG | 2 cut(s) | 44, 259 |
| SmoI | CTYRAG | 2 cut(s) | 44, 259 |
| SphI | GCATGC | 1 cut(s) | 131 |
| Sse9I | AATT | 4 cut(s) | 76, 172, 254, 273 |
| TaiI | ACGT | 1 cut(s) | 42 |
| TaqI | TCGA | 3 cut(s) | 56, 68, 74 |
| TasI | AATT | 4 cut(s) | 76, 172, 254, 273 |
| Tru1I | TTAA | 2 cut(s) | 95, 134 |
| Tru9I | TTAA | 2 cut(s) | 95, 134 |
| TspDTI | ATGAA | 2 cut(s) | 17, 255 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 203 |
| XapI | RAATTY | 3 cut(s) | 76, 172, 254 |
| XceI | RCATGY | 1 cut(s) | 131 |
| ZraI | GACGTC | 1 cut(s) | 40 |
| Zsp2I | ATGCAT | 2 cut(s) | 129, 133 |