Rroxscaffold_7G00205550

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0018630
Physical Location & Seq
Forward (+)
55118842 .. 55123196
4355 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00205550.1

Sequence Viewer

Length: 432 bp
ATGAAGGTTGATTGCCAGTCACCATCTCTCTCTCTCTCTCTCTTAGGCACGGCCGCATTGCAAAGCATAGACGTCCTCAAGTTTGGTTCGATTTCTGGTTCGATTTCGAATTCTTCAAGCTTGAGACCTGATAAACAAGAACCCATCTCTAACACAAGACACAGTTCCACAAGTGAGAGTAGACAAAAAGGCCAAATCCATACATTCCAGATCAAAATCAATGAAGCAAATGGCTCCATAGTCAAAGGCATCTATCTAGACGTGGAAACCTTTACGCCACAAACAGGAAATGAAACAACAACTTTCACACTAGCCCATCCTCTTCCTGACAAAAAAGAGTCCCTGATAAACAAAACAGTTCGCAGAGTGGTAGCTTGGGGAGGCATATTCTTTTGTTTGGCCTATTTTGATAGAGCTGGTCTAACTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

15.58

Weight (kDa)

9.0

Isoelectric Point (pI)

41.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 75
AccI GTMKAC 1 cut(s) 181
AciI CCGC 1 cut(s) 54
AcoI YGGCCR 1 cut(s) 51
AcsI RAATTY 1 cut(s) 109
AcyI GRCGYC 1 cut(s) 72
AfiI CCNNNNNNNGG 1 cut(s) 284
AgsI TTSAA 1 cut(s) 117
AjiI CACGTC 1 cut(s) 262
AluBI AGCT 3 cut(s) 120, 374, 416
AluI AGCT 3 cut(s) 120, 374, 416
Alw26I GTCTC 1 cut(s) 118
AoxI GGCC 3 cut(s) 51, 190, 399
ApoI RAATTY 1 cut(s) 109
AsuHPI GGTGA 1 cut(s) 12
AsuII TTCGAA 1 cut(s) 107
BccI CCATC 3 cut(s) 31, 152, 324
BceAI ACGGC 1 cut(s) 66
BcoDI GTCTC 1 cut(s) 118
BfaI CTAG 2 cut(s) 257, 311
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
BmgBI CACGTC 1 cut(s) 262
BmiI GGNNCC 1 cut(s) 235
BmsI GCATC 1 cut(s) 258
Bpu14I TTCGAA 1 cut(s) 107
BpuEI CTTGAG 2 cut(s) 62, 142
BsaBI GATNNNNATC 1 cut(s) 215
BsaHI GRCGYC 1 cut(s) 72
BsaI GGTCTC 1 cut(s) 118
Bsc4I CCNNNNNNNGG 1 cut(s) 284
Bse1I ACTGG 1 cut(s) 16
Bse3DI GCAATG 1 cut(s) 56
Bse8I GATNNNNATC 1 cut(s) 215
BseGI GGATG 1 cut(s) 316
BseJI GATNNNNATC 1 cut(s) 215
BseLI CCNNNNNNNGG 1 cut(s) 284
BseMI GCAATG 1 cut(s) 56
BseNI ACTGG 1 cut(s) 16
BseX3I CGGCCG 1 cut(s) 51
Bsh1285I CGRYCG 1 cut(s) 54
BshFI GGCC 3 cut(s) 53, 192, 401
BsiEI CGRYCG 1 cut(s) 54
BslFI GGGAC 1 cut(s) 325
BslI CCNNNNNNNGG 1 cut(s) 284
BsmAI GTCTC 1 cut(s) 118
BsmFI GGGAC 1 cut(s) 325
BsnI GGCC 3 cut(s) 53, 192, 401
Bso31I GGTCTC 1 cut(s) 118
Bsp119I TTCGAA 1 cut(s) 107
Bsp143I GATC 1 cut(s) 210
BspACI CCGC 1 cut(s) 54
BspANI GGCC 3 cut(s) 53, 192, 401
BspLI GGNNCC 1 cut(s) 235
BspT104I TTCGAA 1 cut(s) 107
BspTNI GGTCTC 1 cut(s) 118
BsrDI GCAATG 1 cut(s) 56
BsrI ACTGG 1 cut(s) 16
BssMI GATC 1 cut(s) 210
BssNI GRCGYC 1 cut(s) 72
Bst4CI ACNGT 3 cut(s) 164, 358, 427
Bst6I CTCTTC 1 cut(s) 327
BstACI GRCGYC 1 cut(s) 72
BstBI TTCGAA 1 cut(s) 107
BstDEI CTNAG 1 cut(s) 43
BstF5I GGATG 1 cut(s) 316
BstKTI GATC 1 cut(s) 213
BstMAI GTCTC 1 cut(s) 118
BstMBI GATC 1 cut(s) 210
BstMCI CGRYCG 1 cut(s) 54
BstZI CGGCCG 1 cut(s) 51
BsuRI GGCC 3 cut(s) 53, 192, 401
BtrI CACGTC 1 cut(s) 262
BtsCI GGATG 1 cut(s) 316
CviJI RGCY 8 cut(s) 53, 120, 192, 234, 314, 374, 401, 416
CviKI_1 RGCY 8 cut(s) 53, 120, 192, 234, 314, 374, 401, 416
DdeI CTNAG 1 cut(s) 43
DpnI GATC 1 cut(s) 212
DpnII GATC 1 cut(s) 210
EaeI YGGCCR 1 cut(s) 51
EagI CGGCCG 1 cut(s) 51
Eam1104I CTCTTC 1 cut(s) 327
EarI CTCTTC 1 cut(s) 327
EclXI CGGCCG 1 cut(s) 51
Eco31I GGTCTC 1 cut(s) 118
Eco52I CGGCCG 1 cut(s) 51
EcoRI GAATTC 1 cut(s) 109
FaiI YATR 5 cut(s) 68, 201, 239, 386, 430
FaqI GGGAC 1 cut(s) 325
FblI GTMKAC 1 cut(s) 181
Fnu4HI GCNGC 1 cut(s) 54
FokI GGATG 1 cut(s) 303
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 2 cut(s) 257, 311
GluI GCNGC 1 cut(s) 54
HaeIII GGCC 3 cut(s) 53, 192, 401
Hin1I GRCGYC 1 cut(s) 72
HindIII AAGCTT 1 cut(s) 118
HinfI GANTC 1 cut(s) 338
HphI GGTGA 1 cut(s) 12
Hpy166II GTNNAC 1 cut(s) 182
Hpy188III TCNNGA 3 cut(s) 208, 257, 326
Hpy8I GTNNAC 1 cut(s) 182
HpyCH4III ACNGT 3 cut(s) 164, 358, 427
HpyCH4IV ACGT 2 cut(s) 72, 261
HpyCH4V TGCA 1 cut(s) 61
HpyF3I CTNAG 1 cut(s) 43
HpySE526I ACGT 2 cut(s) 72, 261
Hsp92I GRCGYC 1 cut(s) 72
Kzo9I GATC 1 cut(s) 210
LmnI GCTCC 1 cut(s) 239
LpnPI CCDG 8 cut(s) 29, 81, 141, 221, 270, 339, 356, 402
LweI GCATC 1 cut(s) 258
MaeI CTAG 2 cut(s) 257, 311
MaeII ACGT 2 cut(s) 72, 261
MaeIII GTNAC 1 cut(s) 18
MalI GATC 1 cut(s) 212
MboI GATC 1 cut(s) 210
MboII GAAGA 2 cut(s) 105, 314
MluCI AATT 1 cut(s) 109
MlyI GAGTC 1 cut(s) 347
MnlI CCTC 3 cut(s) 86, 330, 374
NdeII GATC 1 cut(s) 210
NlaIV GGNNCC 1 cut(s) 235
NmuCI GTSAC 1 cut(s) 18
NspV TTCGAA 1 cut(s) 107
PkrI GCNGC 1 cut(s) 55
PleI GAGTC 1 cut(s) 346
PpsI GAGTC 1 cut(s) 346
PspN4I GGNNCC 1 cut(s) 235
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 1 cut(s) 210
SchI GAGTC 1 cut(s) 347
SetI ASST 8 cut(s) 9, 75, 122, 130, 264, 272, 376, 418
SfaNI GCATC 1 cut(s) 258
SfuI TTCGAA 1 cut(s) 107
SmlI CTYRAG 2 cut(s) 77, 121
SmoI CTYRAG 2 cut(s) 77, 121
Sse9I AATT 1 cut(s) 109
SsiI CCGC 1 cut(s) 54
SspMI CTAG 2 cut(s) 257, 311
TaaI ACNGT 3 cut(s) 164, 358, 427
TaiI ACGT 2 cut(s) 75, 264
TaqI TCGA 3 cut(s) 89, 101, 107
TasI AATT 1 cut(s) 109
TauI GCSGC 1 cut(s) 56
TseFI GTSAC 1 cut(s) 18
Tsp45I GTSAC 1 cut(s) 18
TspDTI ATGAA 3 cut(s) 17, 237, 306
XapI RAATTY 1 cut(s) 109
XbaI TCTAGA 1 cut(s) 256
XmiI GTMKAC 1 cut(s) 181
XspI CTAG 2 cut(s) 257, 311
ZraI GACGTC 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.