Bacterial Ig-like domain 2
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G10590 AT5G40480 |
| fragaria_vesca | FvH4_6g51430 |
| malus_domestica | MD17G1026700.v1.1 |
| prunus_persica | Prupe.3G292000_v2.0.a1 Prupe.3G292000_v2.0.a1 |
| pyrus_communis | pycom17g02180 |
| rosa_chinensis | RchiOBHm_Chr2g0173101 |
| rosa_laevigata | RLG00000022158 |
| rosa_multiflora | Rmu_sc0011236.1_g000011 |
| rosa_roxburghii | Rroxscaffold_2G00079240 |
| rosa_rugosa | Rorug02G0565200 |
| rosa_samantha | Rh2AG645300 Rh2BG656000 Rh2CG621100 Rh2DG669400 |
| rosa_wichuraiana | Rw2G053000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 786, 2471, 3146 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 578, 1024 |
| AatII | GACGTC | 1 cut(s) | 102 |
| Acc16I | TGCGCA | 1 cut(s) | 1146 |
| Acc65I | GGTACC | 1 cut(s) | 5450 |
| AccB1I | GGYRCC | 4 cut(s) | 1739, 4072, 4864, 5450 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 3518, 4421, 4814, 5495 |
| AccBSI | CCGCTC | 2 cut(s) | 3816, 5368 |
| AccII | CGCG | 1 cut(s) | 250 |
| AcoI | YGGCCR | 3 cut(s) | 958, 4171, 4765 |
| AcuI | CTGAAG | 7 cut(s) | 134, 852, 1484, 3561, 4143, 4717, 4845 |
| AcyI | GRCGYC | 3 cut(s) | 62, 99, 4865 |
| AdeI | CACNNNGTG | 1 cut(s) | 3716 |
| AflII | CTTAAG | 1 cut(s) | 530 |
| AflIII | ACRYGT | 3 cut(s) | 618, 1839, 2391 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1988 |
| AhlI | ACTAGT | 3 cut(s) | 227, 2573, 4139 |
| AjiI | CACGTC | 1 cut(s) | 2392 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1382, 1414 |
| Alw21I | GWGCWC | 4 cut(s) | 77, 1330, 3858, 4618 |
| Alw44I | GTGCAC | 1 cut(s) | 1326 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 2099, 2387, 3089 |
| Ama87I | CYCGRG | 1 cut(s) | 1352 |
| AoxI | GGCC | 9 cut(s) | 28, 958, 1136, 1799, 2646, 2725, 3508, 4171, 4765 |
| ApaLI | GTGCAC | 1 cut(s) | 1326 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 5042, 5074 |
| AseI | ATTAAT | 1 cut(s) | 3285 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 1124, 2976, 3903, 5849 |
| Asp718I | GGTACC | 1 cut(s) | 5450 |
| AspLEI | GCGC | 6 cut(s) | 250, 773, 1147, 2544, 4684, 4867 |
| AspS9I | GGNCC | 9 cut(s) | 52, 83, 1136, 1799, 1982, 2174, 2491, 3509, 5050 |
| AsuHPI | GGTGA | 9 cut(s) | 503, 741, 1049, 2060, 3126, 3443, 3709, 3782, 5537 |
| AvaI | CYCGRG | 1 cut(s) | 1352 |
| AvaII | GGWCC | 6 cut(s) | 52, 83, 1982, 2174, 2491, 5050 |
| BaeGI | GKGCMC | 1 cut(s) | 1330 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 936, 969 |
| BalI | TGGCCA | 2 cut(s) | 960, 4173 |
| BanI | GGYRCC | 4 cut(s) | 1739, 4072, 4864, 5450 |
| BanII | GRGCYC | 2 cut(s) | 77, 4618 |
| BbsI | GAAGAC | 2 cut(s) | 846, 5620 |
| Bbv12I | GWGCWC | 4 cut(s) | 77, 1330, 3858, 4618 |
| BbvCI | CCTCAGC | 2 cut(s) | 4377, 5760 |
| BceAI | ACGGC | 3 cut(s) | 75, 178, 817 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 5126, 5160, 5405, 5439 |
| BciVI | GTATCC | 1 cut(s) | 4639 |
| BclI | TGATCA | 3 cut(s) | 1381, 4753, 5212 |
| BcuI | ACTAGT | 3 cut(s) | 227, 2573, 4139 |
| BfmI | CTRYAG | 9 cut(s) | 717, 1263, 1494, 1689, 2284, 2326, 2379, 2559, 3969 |
| BfoI | RGCGCY | 2 cut(s) | 774, 4868 |
| BfrI | CTTAAG | 1 cut(s) | 530 |
| BfuI | GTATCC | 1 cut(s) | 4639 |
| BglII | AGATCT | 2 cut(s) | 3965, 5657 |
| BlpI | GCTNAGC | 1 cut(s) | 4446 |
| Bme18I | GGWCC | 6 cut(s) | 52, 83, 1982, 2174, 2491, 5050 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1988 |
| BmeT110I | CYCGRG | 1 cut(s) | 1352 |
| BmgBI | CACGTC | 1 cut(s) | 2392 |
| BmgT120I | GGNCC | 9 cut(s) | 52, 83, 1136, 1799, 1982, 2174, 2491, 3509, 5050 |
| BmiI | GGNNCC | 9 cut(s) | 1137, 1437, 1741, 2176, 2323, 4074, 4866, 5052, 5452 |
| BmrI | ACTGGG | 3 cut(s) | 1189, 4697, 5696 |
| BmuI | ACTGGG | 3 cut(s) | 1189, 4697, 5696 |
| BpiI | GAAGAC | 2 cut(s) | 846, 5620 |
| BpmI | CTGGAG | 4 cut(s) | 339, 4836, 5286, 5553 |
| Bpu10I | CCTNAGC | 4 cut(s) | 916, 2901, 4377, 5760 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 4446 |
| BpuEI | CTTGAG | 6 cut(s) | 695, 801, 2819, 2946, 4577, 4833 |
| Bsa29I | ATCGAT | 1 cut(s) | 5415 |
| BsaBI | GATNNNNATC | 3 cut(s) | 2055, 2367, 5230 |
| BsaHI | GRCGYC | 3 cut(s) | 62, 99, 4865 |
| BsaI | GGTCTC | 2 cut(s) | 564, 2273 |
| BsaWI | WCCGGW | 2 cut(s) | 133, 5131 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 2497, 2527, 3633, 3663 |
| Bse118I | RCCGGY | 1 cut(s) | 4767 |
| Bse3DI | GCAATG | 5 cut(s) | 90, 2792, 3800, 4605, 4632 |
| Bse8I | GATNNNNATC | 3 cut(s) | 2055, 2367, 5230 |
| BseCI | ATCGAT | 1 cut(s) | 5415 |
| BseJI | GATNNNNATC | 3 cut(s) | 2055, 2367, 5230 |
| BseMI | GCAATG | 5 cut(s) | 90, 2792, 3800, 4605, 4632 |
| BseRI | GAGGAG | 8 cut(s) | 1504, 3063, 3944, 3947, 4113, 5220, 5739, 5797 |
| BseSI | GKGCMC | 1 cut(s) | 1330 |
| BseYI | CCCAGC | 1 cut(s) | 1648 |
| BsgI | GTGCAG | 1 cut(s) | 3024 |
| Bsh1236I | CGCG | 1 cut(s) | 250 |
| BshFI | GGCC | 9 cut(s) | 30, 960, 1138, 1801, 2648, 2727, 3510, 4173, 4767 |
| BshNI | GGYRCC | 4 cut(s) | 1739, 4072, 4864, 5450 |
| BshVI | ATCGAT | 1 cut(s) | 5415 |
| BsiHKAI | GWGCWC | 4 cut(s) | 77, 1330, 3858, 4618 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1352 |
| BsiSI | CCGG | 4 cut(s) | 78, 134, 4768, 5132 |
| BslFI | GGGAC | 8 cut(s) | 820, 1302, 1631, 2123, 2160, 2231, 3049, 5684 |
| BsmFI | GGGAC | 8 cut(s) | 820, 1302, 1631, 2123, 2160, 2231, 3049, 5684 |
| BsmI | GAATGC | 5 cut(s) | 1763, 1855, 2415, 3712, 4317 |
| BsnI | GGCC | 9 cut(s) | 30, 960, 1138, 1801, 2648, 2727, 3510, 4173, 4767 |
| Bso31I | GGTCTC | 2 cut(s) | 564, 2273 |
| BsoBI | CYCGRG | 1 cut(s) | 1352 |
| Bsp1286I | GDGCHC | 4 cut(s) | 77, 1330, 3858, 4618 |
| Bsp1407I | TGTACA | 2 cut(s) | 1045, 2295 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 4446 |
| Bsp19I | CCATGG | 2 cut(s) | 2769, 5078 |
| BspANI | GGCC | 9 cut(s) | 30, 960, 1138, 1801, 2648, 2727, 3510, 4173, 4767 |
| BspDI | ATCGAT | 1 cut(s) | 5415 |
| BspFNI | CGCG | 1 cut(s) | 250 |
| BspHI | TCATGA | 1 cut(s) | 4192 |
| BspLI | GGNNCC | 9 cut(s) | 1137, 1437, 1741, 2176, 2323, 4074, 4866, 5052, 5452 |
| BspMAI | CTGCAG | 3 cut(s) | 2383, 2563, 3973 |
| BspT107I | GGYRCC | 4 cut(s) | 1739, 4072, 4864, 5450 |
| BspTI | CTTAAG | 1 cut(s) | 530 |
| BspTNI | GGTCTC | 2 cut(s) | 564, 2273 |
| BsrBI | CCGCTC | 2 cut(s) | 3816, 5368 |
| BsrDI | GCAATG | 5 cut(s) | 90, 2792, 3800, 4605, 4632 |
| BsrFI | RCCGGY | 1 cut(s) | 4767 |
| BsrGI | TGTACA | 2 cut(s) | 1045, 2295 |
| BssAI | RCCGGY | 1 cut(s) | 4767 |
| BssNI | GRCGYC | 3 cut(s) | 62, 99, 4865 |
| BssT1I | CCWWGG | 5 cut(s) | 2769, 4931, 5022, 5078, 5157 |
| Bst6I | CTCTTC | 7 cut(s) | 420, 871, 1935, 2613, 3864, 4461, 5120 |
| BstACI | GRCGYC | 3 cut(s) | 62, 99, 4865 |
| BstAFI | CTTAAG | 1 cut(s) | 530 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3089 |
| BstAUI | TGTACA | 2 cut(s) | 1045, 2295 |
| BstC8I | GCNNGC | 9 cut(s) | 408, 1253, 2379, 2711, 3069, 4089, 4315, 4569, 5424 |
| BstDSI | CCRYGG | 2 cut(s) | 2769, 5078 |
| BstEII | GGTNACC | 2 cut(s) | 4410, 5525 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1047 |
| BstFNI | CGCG | 1 cut(s) | 250 |
| BstH2I | RGCGCY | 2 cut(s) | 774, 4868 |
| BstHHI | GCGC | 6 cut(s) | 250, 773, 1147, 2544, 4684, 4867 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 165, 299, 1144, 2438, 2486, 3089, 3394, 4382 |
| BstNSI | RCATGY | 4 cut(s) | 622, 1843, 3254, 4317 |
| BstPI | GGTNACC | 2 cut(s) | 4410, 5525 |
| BstSFI | CTRYAG | 9 cut(s) | 717, 1263, 1494, 1689, 2284, 2326, 2379, 2559, 3969 |
| BstSLI | GKGCMC | 1 cut(s) | 1330 |
| BstUI | CGCG | 1 cut(s) | 250 |
| BstV2I | GAAGAC | 2 cut(s) | 846, 5620 |
| BstX2I | RGATCY | 4 cut(s) | 3572, 3878, 3965, 5657 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 1890, 2530, 4110 |
| BstYI | RGATCY | 4 cut(s) | 3572, 3878, 3965, 5657 |
| Bsu15I | ATCGAT | 1 cut(s) | 5415 |
| BsuI | GTATCC | 1 cut(s) | 4639 |
| BsuRI | GGCC | 9 cut(s) | 30, 960, 1138, 1801, 2648, 2727, 3510, 4173, 4767 |
| BsuTUI | ATCGAT | 1 cut(s) | 5415 |
| BtgI | CCRYGG | 2 cut(s) | 2769, 5078 |
| BtrI | CACGTC | 1 cut(s) | 2392 |
| BtsI | GCAGTG | 4 cut(s) | 232, 503, 2388, 2624 |
| Cac8I | GCNNGC | 9 cut(s) | 408, 1253, 2379, 2711, 3069, 4089, 4315, 4569, 5424 |
| CaiI | CAGNNNCTG | 3 cut(s) | 2099, 2387, 3089 |
| CciI | TCATGA | 1 cut(s) | 4192 |
| CfoI | GCGC | 6 cut(s) | 250, 773, 1147, 2544, 4684, 4867 |
| Cfr10I | RCCGGY | 1 cut(s) | 4767 |
| Cfr13I | GGNCC | 9 cut(s) | 52, 83, 1136, 1799, 1982, 2174, 2491, 3509, 5050 |
| ClaI | ATCGAT | 1 cut(s) | 5415 |
| CpoI | CGGWCCG | 1 cut(s) | 83 |
| CseI | GACGC | 3 cut(s) | 51, 136, 4573 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 461, 496, 3405, 3440, 4050, 4085 |
| CspI | CGGWCCG | 1 cut(s) | 83 |
| DinI | GGCGCC | 1 cut(s) | 4866 |
| DraI | TTTAAA | 2 cut(s) | 3501, 4749 |
| DraIII | CACNNNGTG | 1 cut(s) | 3716 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 578, 1024 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1988 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 578, 1024 |
| EaeI | YGGCCR | 3 cut(s) | 958, 4171, 4765 |
| Eam1104I | CTCTTC | 7 cut(s) | 420, 871, 1935, 2613, 3864, 4461, 5120 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1988 |
| EarI | CTCTTC | 7 cut(s) | 420, 871, 1935, 2613, 3864, 4461, 5120 |
| EciI | GGCGGA | 2 cut(s) | 65, 2504 |
| Ecl136II | GAGCTC | 2 cut(s) | 75, 4616 |
| Eco130I | CCWWGG | 5 cut(s) | 2769, 4931, 5022, 5078, 5157 |
| Eco147I | AGGCCT | 1 cut(s) | 2727 |
| Eco24I | GRGCYC | 2 cut(s) | 77, 4618 |
| Eco31I | GGTCTC | 2 cut(s) | 564, 2273 |
| Eco32I | GATATC | 1 cut(s) | 4671 |
| Eco47I | GGWCC | 6 cut(s) | 52, 83, 1982, 2174, 2491, 5050 |
| Eco53kI | GAGCTC | 2 cut(s) | 75, 4616 |
| Eco57I | CTGAAG | 7 cut(s) | 134, 852, 1484, 3561, 4143, 4717, 4845 |
| Eco88I | CYCGRG | 1 cut(s) | 1352 |
| Eco91I | GGTNACC | 2 cut(s) | 4410, 5525 |
| EcoICRI | GAGCTC | 2 cut(s) | 75, 4616 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1047 |
| EcoO65I | GGTNACC | 2 cut(s) | 4410, 5525 |
| EcoRI | GAATTC | 1 cut(s) | 2508 |
| EcoRV | GATATC | 1 cut(s) | 4671 |
| EcoT14I | CCWWGG | 5 cut(s) | 2769, 4931, 5022, 5078, 5157 |
| EcoT22I | ATGCAT | 2 cut(s) | 1765, 4319 |
| EcoT38I | GRGCYC | 2 cut(s) | 77, 4618 |
| EgeI | GGCGCC | 1 cut(s) | 4866 |
| EheI | GGCGCC | 1 cut(s) | 4866 |
| ErhI | CCWWGG | 5 cut(s) | 2769, 4931, 5022, 5078, 5157 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 380, 412, 3942, 3974 |
| FaqI | GGGAC | 8 cut(s) | 820, 1302, 1631, 2123, 2160, 2231, 3049, 5684 |
| FauI | CCCGC | 2 cut(s) | 4092, 5361 |
| FauNDI | CATATG | 1 cut(s) | 4504 |
| FbaI | TGATCA | 3 cut(s) | 1381, 4753, 5212 |
| FriOI | GRGCYC | 2 cut(s) | 77, 4618 |
| FspI | TGCGCA | 1 cut(s) | 1146 |
| GlaI | GCGC | 6 cut(s) | 249, 772, 1146, 2543, 4683, 4866 |
| GsaI | CCCAGC | 1 cut(s) | 1652 |
| GsuI | CTGGAG | 4 cut(s) | 339, 4836, 5286, 5553 |
| HaeII | RGCGCY | 2 cut(s) | 774, 4868 |
| HaeIII | GGCC | 9 cut(s) | 30, 960, 1138, 1801, 2648, 2727, 3510, 4173, 4767 |
| HapII | CCGG | 4 cut(s) | 78, 134, 4768, 5132 |
| HgaI | GACGC | 3 cut(s) | 51, 136, 4573 |
| HhaI | GCGC | 6 cut(s) | 250, 773, 1147, 2544, 4684, 4867 |
| Hin1I | GRCGYC | 3 cut(s) | 62, 99, 4865 |
| Hin6I | GCGC | 6 cut(s) | 248, 771, 1145, 2542, 4682, 4865 |
| HinP1I | GCGC | 6 cut(s) | 248, 771, 1145, 2542, 4682, 4865 |
| HincII | GTYRAC | 4 cut(s) | 883, 3413, 4729, 5836 |
| HindII | GTYRAC | 4 cut(s) | 883, 3413, 4729, 5836 |
| HindIII | AAGCTT | 2 cut(s) | 389, 2586 |
| HpaI | GTTAAC | 2 cut(s) | 4729, 5836 |
| HpaII | CCGG | 4 cut(s) | 78, 134, 4768, 5132 |
| HphI | GGTGA | 9 cut(s) | 503, 741, 1049, 2060, 3126, 3443, 3709, 3782, 5537 |
| Hpy99I | CGWCG | 5 cut(s) | 67, 101, 164, 311, 4567 |
| HpyCH4IV | ACGT | 6 cut(s) | 99, 309, 1246, 2391, 4476, 5716 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 165, 299, 1144, 2438, 2486, 3089, 3394, 4382 |
| HpySE526I | ACGT | 6 cut(s) | 99, 309, 1246, 2391, 4476, 5716 |
| Hsp92I | GRCGYC | 3 cut(s) | 62, 99, 4865 |
| HspAI | GCGC | 6 cut(s) | 248, 771, 1145, 2542, 4682, 4865 |
| KasI | GGCGCC | 1 cut(s) | 4864 |
| KpnI | GGTACC | 1 cut(s) | 5454 |
| Ksp22I | TGATCA | 3 cut(s) | 1381, 4753, 5212 |
| KspAI | GTTAAC | 2 cut(s) | 4729, 5836 |
| MaeII | ACGT | 6 cut(s) | 99, 309, 1246, 2391, 4476, 5716 |
| MbiI | CCGCTC | 2 cut(s) | 3816, 5368 |
| MfeI | CAATTG | 2 cut(s) | 2427, 2632 |
| MflI | RGATCY | 4 cut(s) | 3572, 3878, 3965, 5657 |
| MhlI | GDGCHC | 4 cut(s) | 77, 1330, 3858, 4618 |
| MlsI | TGGCCA | 2 cut(s) | 960, 4173 |
| MluNI | TGGCCA | 2 cut(s) | 960, 4173 |
| Mly113I | GGCGCC | 1 cut(s) | 4865 |
| MlyI | GAGTC | 9 cut(s) | 530, 878, 2080, 2299, 3209, 3418, 3636, 4198, 5293 |
| MmeI | TCCRAC | 3 cut(s) | 2100, 4680, 5227 |
| Mox20I | TGGCCA | 2 cut(s) | 960, 4173 |
| Mph1103I | ATGCAT | 2 cut(s) | 1765, 4319 |
| MroXI | GAANNNNTTC | 4 cut(s) | 1124, 2976, 3903, 5849 |
| MscI | TGGCCA | 2 cut(s) | 960, 4173 |
| Msp20I | TGGCCA | 2 cut(s) | 960, 4173 |
| MspA1I | CMGCKG | 1 cut(s) | 1442 |
| MspCI | CTTAAG | 1 cut(s) | 530 |
| MspI | CCGG | 4 cut(s) | 78, 134, 4768, 5132 |
| MunI | CAATTG | 2 cut(s) | 2427, 2632 |
| Mva1269I | GAATGC | 5 cut(s) | 1763, 1855, 2415, 3712, 4317 |
| MvnI | CGCG | 1 cut(s) | 250 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 165, 299, 1144, 2438, 2486, 3089, 3394, 4382 |
| NarI | GGCGCC | 1 cut(s) | 4865 |
| NcoI | CCATGG | 2 cut(s) | 2769, 5078 |
| NdeI | CATATG | 1 cut(s) | 4504 |
| NlaIV | GGNNCC | 9 cut(s) | 1137, 1437, 1741, 2176, 2323, 4074, 4866, 5052, 5452 |
| NmeAIII | GCCGAG | 1 cut(s) | 6 |
| NsbI | TGCGCA | 1 cut(s) | 1146 |
| NsiI | ATGCAT | 2 cut(s) | 1765, 4319 |
| NspI | RCATGY | 4 cut(s) | 622, 1843, 3254, 4317 |
| PaeI | GCATGC | 1 cut(s) | 4317 |
| PaeR7I | CTCGAG | 1 cut(s) | 1352 |
| PagI | TCATGA | 1 cut(s) | 4192 |
| PasI | CCCWGGG | 2 cut(s) | 1132, 1431 |
| PceI | AGGCCT | 1 cut(s) | 2727 |
| PciI | ACATGT | 2 cut(s) | 618, 1839 |
| PctI | GAATGC | 5 cut(s) | 1763, 1855, 2415, 3712, 4317 |
| PdmI | GAANNNNTTC | 4 cut(s) | 1124, 2976, 3903, 5849 |
| PflFI | GACNNNGTC | 1 cut(s) | 4511 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 3518, 4421, 4814, 5495 |
| PleI | GAGTC | 9 cut(s) | 530, 878, 2080, 2298, 3209, 3417, 3635, 4197, 5293 |
| PluTI | GGCGCC | 1 cut(s) | 4868 |
| PpsI | GAGTC | 9 cut(s) | 530, 878, 2080, 2298, 3209, 3417, 3635, 4197, 5293 |
| PscI | ACATGT | 2 cut(s) | 618, 1839 |
| PshBI | ATTAAT | 1 cut(s) | 3285 |
| PsiI | TTATAA | 3 cut(s) | 786, 2471, 3146 |
| Psp124BI | GAGCTC | 2 cut(s) | 77, 4618 |
| PspEI | GGTNACC | 2 cut(s) | 4410, 5525 |
| PspFI | CCCAGC | 1 cut(s) | 1648 |
| PspN4I | GGNNCC | 9 cut(s) | 1137, 1437, 1741, 2176, 2323, 4074, 4866, 5052, 5452 |
| PspPI | GGNCC | 9 cut(s) | 52, 83, 1136, 1799, 1982, 2174, 2491, 3509, 5050 |
| PstI | CTGCAG | 3 cut(s) | 2383, 2563, 3973 |
| PstNI | CAGNNNCTG | 3 cut(s) | 2099, 2387, 3089 |
| PsuI | RGATCY | 4 cut(s) | 3572, 3878, 3965, 5657 |
| PsyI | GACNNNGTC | 1 cut(s) | 4511 |
| PvuII | CAGCTG | 1 cut(s) | 1442 |
| Rsr2I | CGGWCCG | 1 cut(s) | 83 |
| RsrII | CGGWCCG | 1 cut(s) | 83 |
| SacI | GAGCTC | 2 cut(s) | 77, 4618 |
| Sau96I | GGNCC | 9 cut(s) | 52, 83, 1136, 1799, 1982, 2174, 2491, 3509, 5050 |
| SchI | GAGTC | 9 cut(s) | 530, 878, 2080, 2299, 3209, 3418, 3636, 4198, 5293 |
| SduI | GDGCHC | 4 cut(s) | 77, 1330, 3858, 4618 |
| SfcI | CTRYAG | 9 cut(s) | 717, 1263, 1494, 1689, 2284, 2326, 2379, 2559, 3969 |
| SfoI | GGCGCC | 1 cut(s) | 4866 |
| Sfr274I | CTCGAG | 1 cut(s) | 1352 |
| SinI | GGWCC | 6 cut(s) | 52, 83, 1982, 2174, 2491, 5050 |
| SlaI | CTCGAG | 1 cut(s) | 1352 |
| SmlI | CTYRAG | 8 cut(s) | 530, 674, 816, 1352, 2798, 2961, 4592, 4848 |
| SmoI | CTYRAG | 8 cut(s) | 530, 674, 816, 1352, 2798, 2961, 4592, 4848 |
| SpeI | ACTAGT | 3 cut(s) | 227, 2573, 4139 |
| SphI | GCATGC | 1 cut(s) | 4317 |
| SseBI | AGGCCT | 1 cut(s) | 2727 |
| SspDI | GGCGCC | 1 cut(s) | 4864 |
| SstI | GAGCTC | 2 cut(s) | 77, 4618 |
| StuI | AGGCCT | 1 cut(s) | 2727 |
| StyI | CCWWGG | 5 cut(s) | 2769, 4931, 5022, 5078, 5157 |
| TaiI | ACGT | 6 cut(s) | 102, 312, 1249, 2394, 4479, 5719 |
| TaqI | TCGA | 8 cut(s) | 639, 1353, 1458, 1921, 3114, 4333, 5415, 5752 |
| TatI | WGTACW | 5 cut(s) | 690, 754, 1045, 2295, 4852 |
| TauI | GCSGC | 1 cut(s) | 2018 |
| TspGWI | ACGGA | 2 cut(s) | 413, 3005 |
| Tth111I | GACNNNGTC | 1 cut(s) | 4511 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 3518, 4421, 4814, 5495 |
| Vha464I | CTTAAG | 1 cut(s) | 530 |
| VneI | GTGCAC | 1 cut(s) | 1326 |
| VpaK11BI | GGWCC | 6 cut(s) | 52, 83, 1982, 2174, 2491, 5050 |
| VspI | ATTAAT | 1 cut(s) | 3285 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1047 |
| XceI | RCATGY | 4 cut(s) | 622, 1843, 3254, 4317 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 846 |
| XhoI | CTCGAG | 1 cut(s) | 1352 |
| XmnI | GAANNNNTTC | 4 cut(s) | 1124, 2976, 3903, 5849 |
| ZraI | GACGTC | 1 cut(s) | 100 |
| Zsp2I | ATGCAT | 2 cut(s) | 1765, 4319 |