Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012304.1

Orthogroup ID

OG0003591

Physical Location & Seq

Genomic Coordinates Forward (+)

20043 .. 20465

Gene Structure 423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012304.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

atgcccacctcagcctcggcctccgtctcggtctcggcctccacctccgcctcttcaaccaccgccaccggccccaattccgatcttctcacccgccttaactctcccgactcccaagtccagctcaaggctctcagggagctcaagaaccgcatcatcggcaatcgcaccaagaagctttccttcgtcaagctcggcctcgtccctgccgtcgccgccatcctcgcctctaaagcccaggcccactcccactccgatcacgattgtaatctccttgttcagtccgccgctgccctcggaagcttcgcctgcggtttcgatgccggcgtccgagccgttctcgatgccggcgcctgccctaacctcttgttgcttctatctcatcctgatgacaaggtaacttcatttgatcgaaaatcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm DUF4220

Protein Analysis

140

Amino Acids

14.44

Weight (kDa)

9.22

Isoelectric Point (pI)

29.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003591)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51350
fragaria_vesca	FvH4_3g28860 FvH4_3g28860 FvH4_3g28860 FvH4_3g28860 FvH4_3g28860 FvH4_3g28860 FvH4_3g28860 FvH4_3g28860 FvH4_3g28860
malus_domestica	MD03G1175100.v1.1 MD11G1193200.v1.1
prunus_persica	Prupe.4G249300_v2.0.a1 Prupe.4G249300_v2.0.a1 Prupe.4G249300_v2.0.a1 Prupe.4G249300_v2.0.a1 Prupe.4G249300_v2.0.a1 Prupe.4G249300_v2.0.a1 Prupe.4G249300_v2.0.a1 Prupe.4G249300_v2.0.a1 Prupe.4G249300_v2.0.a1
pyrus_communis	pycom03g13260
rosa_chinensis	RchiOBHm_Chr5g0052041
rosa_laevigata	RLG00000034847
rosa_multiflora	Rmu_sc0012304.1_g000003 Rmu_sc0012304.1_g000004
rosa_roxburghii	Rroxscaffold_1G00027840
rosa_rugosa	Rorug05G0275300 Rorug05G0275400 Rorug05G0275500
rosa_samantha	Rh5AG347300 Rh5BG358200 Rh5CG383700 Rh5DG373500
rosa_wichuraiana	Rw5G032820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	116
AccB1I	GGYRCC	1 cut(s)	350
AciI	CCGC	8 cut(s)	48, 63, 94, 151, 216, 285, 288, 312
AcyI	GRCGYC	2 cut(s)	327, 351
AfiI	CCNNNNNNNGG	1 cut(s)	127
AgsI	TTSAA	1 cut(s)	57
AjnI	CCWGG	1 cut(s)	237
AluBI	AGCT	5 cut(s)	124, 142, 178, 193, 303
AluI	AGCT	5 cut(s)	124, 142, 178, 193, 303
Alw21I	GWGCWC	1 cut(s)	144
Alw26I	GTCTC	2 cut(s)	31, 37
AoxI	GGCC	5 cut(s)	18, 36, 70, 196, 240
ApeKI	GCWGC	1 cut(s)	290
AspLEI	GCGC	1 cut(s)	353
AspS9I	GGNCC	2 cut(s)	71, 241
AsuHPI	GGTGA	1 cut(s)	82
BanI	GGYRCC	1 cut(s)	350
BanII	GRGCYC	1 cut(s)	144
Bbv12I	GWGCWC	1 cut(s)	144
BbvCI	CCTCAGC	1 cut(s)	10
BbvI	GCAGC	1 cut(s)	277
BccI	CCATC	1 cut(s)	227
BceAI	ACGGC	2 cut(s)	194, 320
BciT130I	CCWGG	1 cut(s)	239
BcoDI	GTCTC	2 cut(s)	31, 37
BfoI	RGCGCY	1 cut(s)	354
BisI	GCNGC	3 cut(s)	216, 288, 291
BlsI	GCNGC	3 cut(s)	217, 289, 292
Bme1390I	CCNGG	1 cut(s)	239
BmgT120I	GGNCC	2 cut(s)	71, 241
BmiI	GGNNCC	2 cut(s)	73, 352
BmrFI	CCNGG	1 cut(s)	239
BmsI	GCATC	3 cut(s)	162, 310, 334
BplI	GAGNNNNNCTC	2 cut(s)	324, 356
Bpu10I	CCTNAGC	1 cut(s)	10
BpuEI	CTTGAG	2 cut(s)	110, 128
BsaBI	GATNNNNATC	1 cut(s)	267
BsaHI	GRCGYC	2 cut(s)	327, 351
BsaI	GGTCTC	1 cut(s)	37
BsaJI	CCNNGG	3 cut(s)	15, 237, 295
BsaXI	ACNNNNNCTCC	2 cut(s)	236, 266
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse118I	RCCGGY	3 cut(s)	68, 323, 347
Bse8I	GATNNNNATC	1 cut(s)	267
BseBI	CCWGG	1 cut(s)	239
BseDI	CCNNGG	3 cut(s)	15, 237, 295
BseGI	GGATG	2 cut(s)	219, 382
BseJI	GATNNNNATC	1 cut(s)	267
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMII	CTCAG	2 cut(s)	24, 148
BseXI	GCAGC	1 cut(s)	277
BshFI	GGCC	5 cut(s)	20, 38, 72, 198, 242
BshNI	GGYRCC	1 cut(s)	350
BsiHKAI	GWGCWC	1 cut(s)	144
BsiSI	CCGG	3 cut(s)	69, 324, 348
BslFI	GGGAC	1 cut(s)	188
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmAI	GTCTC	2 cut(s)	31, 37
BsmBI	CGTCTC	1 cut(s)	31
BsmFI	GGGAC	1 cut(s)	188
BsnI	GGCC	5 cut(s)	20, 38, 72, 198, 242
Bso31I	GGTCTC	1 cut(s)	37
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	3 cut(s)	82, 256, 409
BspACI	CCGC	8 cut(s)	48, 63, 94, 151, 216, 285, 288, 312
BspANI	GGCC	5 cut(s)	20, 38, 72, 198, 242
BspCNI	CTCAG	2 cut(s)	23, 147
BspLI	GGNNCC	2 cut(s)	73, 352
BspT107I	GGYRCC	1 cut(s)	350
BspTNI	GGTCTC	1 cut(s)	37
BsrFI	RCCGGY	3 cut(s)	68, 323, 347
BssAI	RCCGGY	3 cut(s)	68, 323, 347
BssECI	CCNNGG	3 cut(s)	15, 237, 295
BssMI	GATC	3 cut(s)	82, 256, 409
BssNI	GRCGYC	2 cut(s)	327, 351
Bst2UI	CCWGG	1 cut(s)	239
Bst6I	CTCTTC	1 cut(s)	58
BstACI	GRCGYC	2 cut(s)	327, 351
BstC8I	GCNNGC	4 cut(s)	310, 325, 349, 355
BstDEI	CTNAG	2 cut(s)	10, 134
BstF5I	GGATG	2 cut(s)	219, 382
BstH2I	RGCGCY	1 cut(s)	354
BstHHI	GCGC	1 cut(s)	353
BstKTI	GATC	3 cut(s)	85, 259, 412
BstMAI	GTCTC	2 cut(s)	31, 37
BstMBI	GATC	3 cut(s)	82, 256, 409
BstMWI	GCNNNNNNNGC	5 cut(s)	159, 215, 224, 233, 309
BstNI	CCWGG	1 cut(s)	239
BstSCI	CCNGG	1 cut(s)	237
BstV1I	GCAGC	1 cut(s)	277
BsuRI	GGCC	5 cut(s)	20, 38, 72, 198, 242
BtsCI	GGATG	2 cut(s)	219, 382
Cac8I	GCNNGC	4 cut(s)	310, 325, 349, 355
CfoI	GCGC	1 cut(s)	353
Cfr10I	RCCGGY	3 cut(s)	68, 323, 347
Cfr13I	GGNCC	2 cut(s)	71, 241
CseI	GACGC	1 cut(s)	316
DdeI	CTNAG	2 cut(s)	10, 134
DinI	GGCGCC	1 cut(s)	352
DpnI	GATC	3 cut(s)	84, 258, 411
DpnII	GATC	3 cut(s)	82, 256, 409
DrdI	GACNNNNNNGTC	1 cut(s)	116
DseDI	GACNNNNNNGTC	1 cut(s)	116
Eam1104I	CTCTTC	1 cut(s)	58
EarI	CTCTTC	1 cut(s)	58
EciI	GGCGGA	2 cut(s)	37, 274
Ecl136II	GAGCTC	1 cut(s)	142
Eco24I	GRGCYC	1 cut(s)	144
Eco31I	GGTCTC	1 cut(s)	37
Eco53kI	GAGCTC	1 cut(s)	142
EcoICRI	GAGCTC	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	237
EcoT38I	GRGCYC	1 cut(s)	144
EgeI	GGCGCC	1 cut(s)	352
EheI	GGCGCC	1 cut(s)	352
Esp3I	CGTCTC	1 cut(s)	31
FalI	AAGNNNNNCTT	2 cut(s)	167, 199
FaqI	GGGAC	1 cut(s)	188
FauI	CCCGC	1 cut(s)	101
Fnu4HI	GCNGC	3 cut(s)	216, 288, 291
FokI	GGATG	2 cut(s)	206, 369
FriOI	GRGCYC	1 cut(s)	144
Fsp4HI	GCNGC	3 cut(s)	216, 288, 291
GlaI	GCGC	1 cut(s)	352
GluI	GCNGC	3 cut(s)	216, 288, 291
HaeII	RGCGCY	1 cut(s)	354
HaeIII	GGCC	5 cut(s)	20, 38, 72, 198, 242
HapII	CCGG	3 cut(s)	69, 324, 348
HgaI	GACGC	1 cut(s)	316
HhaI	GCGC	1 cut(s)	353
Hin1I	GRCGYC	2 cut(s)	327, 351
Hin6I	GCGC	1 cut(s)	351
HinP1I	GCGC	1 cut(s)	351
HindIII	AAGCTT	2 cut(s)	176, 301
HinfI	GANTC	1 cut(s)	110
HpaII	CCGG	3 cut(s)	69, 324, 348
HphI	GGTGA	1 cut(s)	82
Hpy188I	TCNGA	4 cut(s)	82, 256, 299, 332
Hpy188III	TCNNGA	5 cut(s)	107, 145, 260, 341, 386
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	1 cut(s)	193
HpyF10VI	GCNNNNNNNGC	5 cut(s)	159, 215, 224, 233, 309
HpyF3I	CTNAG	2 cut(s)	10, 134
Hsp92I	GRCGYC	2 cut(s)	327, 351
HspAI	GCGC	1 cut(s)	351
KasI	GGCGCC	1 cut(s)	350
KroI	GCCGGC	2 cut(s)	323, 347
KroNI	GCCGGC	2 cut(s)	325, 349
Kzo9I	GATC	3 cut(s)	82, 256, 409
LmnI	GCTCC	1 cut(s)	139
Lsp1109I	GCAGC	1 cut(s)	277
LweI	GCATC	3 cut(s)	162, 310, 334
MaeIII	GTNAC	1 cut(s)	397
MalI	GATC	3 cut(s)	84, 258, 411
MboI	GATC	3 cut(s)	82, 256, 409
MboII	GAAGA	2 cut(s)	45, 77
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	1 cut(s)	76
Mly113I	GGCGCC	1 cut(s)	351
MlyI	GAGTC	1 cut(s)	104
MroNI	GCCGGC	2 cut(s)	323, 347
MseI	TTAA	2 cut(s)	99, 421
MslI	CAYNNNNRTG	1 cut(s)	387
MspA1I	CMGCKG	1 cut(s)	290
MspI	CCGG	3 cut(s)	69, 324, 348
MspR9I	CCNGG	1 cut(s)	239
MvaI	CCWGG	1 cut(s)	239
MwoI	GCNNNNNNNGC	5 cut(s)	159, 215, 224, 233, 309
NaeI	GCCGGC	2 cut(s)	325, 349
NarI	GGCGCC	1 cut(s)	351
NdeII	GATC	3 cut(s)	82, 256, 409
NgoMIV	GCCGGC	2 cut(s)	323, 347
NlaIV	GGNNCC	2 cut(s)	73, 352
NmeAIII	GCCGAG	2 cut(s)	14, 174
PcsI	WCGNNNNNNNCGW	2 cut(s)	207, 324
PdiI	GCCGGC	2 cut(s)	325, 349
PkrI	GCNGC	3 cut(s)	217, 289, 292
PleI	GAGTC	1 cut(s)	104
PluTI	GGCGCC	1 cut(s)	354
PpsI	GAGTC	1 cut(s)	104
Psp124BI	GAGCTC	1 cut(s)	144
Psp6I	CCWGG	1 cut(s)	237
PspGI	CCWGG	1 cut(s)	237
PspN4I	GGNNCC	2 cut(s)	73, 352
PspPI	GGNCC	2 cut(s)	71, 241
RseI	CAYNNNNRTG	1 cut(s)	387
SacI	GAGCTC	1 cut(s)	144
SaqAI	TTAA	2 cut(s)	99, 421
SatI	GCNGC	3 cut(s)	216, 288, 291
Sau3AI	GATC	3 cut(s)	82, 256, 409
Sau96I	GGNCC	2 cut(s)	71, 241
SchI	GAGTC	1 cut(s)	104
ScrFI	CCNGG	1 cut(s)	239
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	9 cut(s)	11, 47, 126, 144, 180, 195, 305, 366, 399
SfaNI	GCATC	3 cut(s)	162, 310, 334
SfoI	GGCGCC	1 cut(s)	352
SmiMI	CAYNNNNRTG	1 cut(s)	387
SmlI	CTYRAG	2 cut(s)	125, 143
SmoI	CTYRAG	2 cut(s)	125, 143
Sse9I	AATT	1 cut(s)	76
SsiI	CCGC	8 cut(s)	48, 63, 94, 151, 216, 285, 288, 312
SspDI	GGCGCC	1 cut(s)	350
SstI	GAGCTC	1 cut(s)	144
StyD4I	CCNGG	1 cut(s)	237
TaqI	TCGA	3 cut(s)	318, 342, 412
TaqII	GACCGA	1 cut(s)	19
TasI	AATT	1 cut(s)	76
TauI	GCSGC	2 cut(s)	218, 290
Tru1I	TTAA	2 cut(s)	99, 421
Tru9I	TTAA	2 cut(s)	99, 421
TseI	GCWGC	1 cut(s)	290
TspDTI	ATGAA	1 cut(s)	393
TspGWI	ACGGA	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.