Rorug05G0275400

Armadillo repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
31093872 .. 31095308
1437 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0275400.1

Sequence Viewer

Length: 1431 bp
ATGTTGGTTCGGTTCGTGAGTCCGATCCACTCACAGACCCGAAACAAGCGTTTCTGCCCAATTCTCCATAAACCCTACTTTCTTCCTCAAACCCTAAAAATGGTGACTCCTACTCAGGCCATTTCCAAGAGACCCATTTGCCCTTCCTGCTCCAAACCCATCCGGCTCTGCCTCTGCAATCGGATCCACAACCCGGGGCTCCACAACTCTGTAAGTGTGACCATTCTCCAACACAGCTTTGAGAAGAACCACCCTCTTAATTCAGCTAGGATTGCCAGATTAGGGCTTAAGAATCTGAAAGTGGTTACTGTTTTTGATGTACATTTTGATGCCCGGTTCGTTATCCGGTTGCTCGACCCGGATTTGGAAACGGGTTTGGACCGGAATGGTTCAAAGGGTGCATCTTTTGATGGAGCTGTGGAAACTGGAGAGACCCAGAAGGTGGATTCTGGGTTTTGTGAGTCGGAAATTGGGGGTTTTGAAAATTCAGCAAAACAGAGGTGGTGTAGTAGTGTGATTGATTGTAATGAGCAATGTAGTTTTGGGGATGATATAGGTGGTGTGAGTAGTGCTCAAAATCAATTAGGAAGTGTAGATTCTGCAGAAAATTGTGGTGTATCGACGGGTGATGCATTACTTGTAGAGCAAGAAGATGAATTCACCAGTGAAGAGTTCACTGATGGAAAGAGTGTGCTTGCTTTGGAGACTTGTCATAAGCATTTAGATGGACAATCCAATGTGGATGTGGCTTCAACTGCTACGACATTGGATTCATTATCTGATAGAGATTTTAATTCGGTTGAAGGTGTCAAAGTTAGTAATGCTGGACCTGTTATAACTGCTACAATTGGCAAGAATGGTGTCATTAGTTCTCTTACTCATACTTGGATGCCACAAACCCATCACAAGAATTCACATTTTGATACGATTTCAGACACTACAGAAGCGCGCGAGGCTCTGGCAAAGGGATTCGTTGTACAAAAGTTGCAAAAGCAGCCACCTAAAGGAAATGTAGAGTTAGATGAAGCTGTAGAGTTTGAAGTACAAGTTCCTCCGGGGTCTGTTCTCTTGTTTCCATCCAAAGAAGCAGTTAGTGCTAGTGACCTTGAAGCCATGGATATTAAGGTGAAGAATTTGATTGTCTTGGATGGAACATGGTCAAAGGCAAAGAGAATGTATGTGGAAAACCCCTGGTTGAAGCTATTGCCACACTTGAGGTTGGATTTGGACAAGCTGAGCTTGTACAATGAAGTGAGAGTCCAGCCCAAGCCGGGATTCTTGTCCACCATTGAGAGCATTGTGTACGCACTAAAGGCGGTAGGGGACAGTCCCGAAGGCCTGGACAATCTCTTGGATGTTTTCGAGTCCATGGTTGGAGACCAGAGACGATGTAAAGAAGAGAGATTGAGCAATGTATCACCGCCCGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

476

Amino Acids

52.23

Weight (kDa)

5.66

Isoelectric Point (pI)

37.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DTW PF03942 44 - 104 7.7e-09 DTW domain
DTW PF03942 295 - 461 5.4e-28 DTW domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 836
AccB7I CCANNNNNTGG 1 cut(s) 442
AccII CGCG 2 cut(s) 949, 951
AciI CCGC 2 cut(s) 1316, 1421
AclWI GGATC 3 cut(s) 19, 178, 191
AcsI RAATTY 4 cut(s) 484, 656, 910, 1132
AfaI GTAC 5 cut(s) 321, 978, 1044, 1244, 1304
AfiI CCNNNNNNNGG 7 cut(s) 100, 193, 282, 364, 442, 1004, 1271
AflII CTTAAG 1 cut(s) 287
AgsI TTSAA 7 cut(s) 393, 482, 753, 803, 1040, 1109, 1198
AjnI CCWGG 2 cut(s) 1190, 1338
AjuI GAANNNNNNNTTGG 2 cut(s) 1259, 1291
AluBI AGCT 7 cut(s) 237, 266, 416, 1028, 1201, 1234, 1239
AluI AGCT 7 cut(s) 237, 266, 416, 1028, 1201, 1234, 1239
Alw21I GWGCWC 1 cut(s) 574
Alw26I GTCTC 5 cut(s) 124, 425, 698, 1371, 1378
AlwI GGATC 3 cut(s) 19, 178, 191
Ama87I CYCGRG 1 cut(s) 193
AoxI GGCC 2 cut(s) 117, 1336
ApeKI GCWGC 1 cut(s) 994
ApoI RAATTY 4 cut(s) 484, 656, 910, 1132
AspLEI GCGC 2 cut(s) 949, 951
AspS9I GGNCC 2 cut(s) 379, 827
AsuC2I CCSGG 7 cut(s) 194, 195, 334, 359, 1056, 1272, 1425
AsuHPI GGTGA 5 cut(s) 115, 638, 652, 1138, 1410
AvaI CYCGRG 1 cut(s) 193
AvaII GGWCC 2 cut(s) 379, 827
BamHI GGATCC 1 cut(s) 183
BanII GRGCYC 1 cut(s) 201
Bbv12I GWGCWC 1 cut(s) 574
BbvI GCAGC 1 cut(s) 1006
BccI CCATC 7 cut(s) 167, 404, 674, 719, 909, 1084, 1142
BciT130I CCWGG 2 cut(s) 1192, 1340
BcnI CCSGG 7 cut(s) 194, 195, 334, 359, 1056, 1272, 1425
BcoDI GTCTC 5 cut(s) 124, 425, 698, 1371, 1378
BfaI CTAG 2 cut(s) 267, 1098
BfmI CTRYAG 3 cut(s) 600, 939, 1029
BfrI CTTAAG 1 cut(s) 287
BisI GCNGC 1 cut(s) 995
BlpI GCTNAGC 1 cut(s) 1235
BlsI GCNGC 1 cut(s) 996
Bme1390I CCNGG 9 cut(s) 194, 195, 334, 359, 1056, 1192, 1272, 1340, 1425
Bme18I GGWCC 2 cut(s) 379, 827
BmeT110I CYCGRG 1 cut(s) 193
BmgT120I GGNCC 2 cut(s) 379, 827
BmiI GGNNCC 2 cut(s) 185, 200
BmrFI CCNGG 9 cut(s) 194, 195, 334, 359, 1056, 1192, 1272, 1340, 1425
BmsI GCATC 4 cut(s) 319, 410, 619, 879
BplI GAGNNNNNCTC 2 cut(s) 556, 588
BpmI CTGGAG 1 cut(s) 447
Bpu1102I GCTNAGC 1 cut(s) 1235
BpuEI CTTGAG 1 cut(s) 1234
BpuMI CCSGG 7 cut(s) 194, 195, 334, 359, 1056, 1272, 1425
BsaI GGTCTC 3 cut(s) 124, 425, 1371
BsaJI CCNNGG 6 cut(s) 193, 194, 1055, 1113, 1190, 1368
BsaWI WCCGGW 2 cut(s) 345, 381
Bsc4I CCNNNNNNNGG 7 cut(s) 100, 193, 282, 364, 442, 1004, 1271
Bse1I ACTGG 2 cut(s) 430, 663
Bse3DI GCAATG 2 cut(s) 539, 1417
BseBI CCWGG 2 cut(s) 1192, 1340
BseDI CCNNGG 6 cut(s) 193, 194, 1055, 1113, 1190, 1368
BseGI GGATG 7 cut(s) 159, 553, 748, 894, 1076, 1153, 1360
BseLI CCNNNNNNNGG 7 cut(s) 100, 193, 282, 364, 442, 1004, 1271
BseMI GCAATG 2 cut(s) 539, 1417
BseMII CTCAG 2 cut(s) 128, 1226
BseNI ACTGG 2 cut(s) 430, 663
BsePI GCGCGC 1 cut(s) 947
BseXI GCAGC 1 cut(s) 1006
Bsh1236I CGCG 2 cut(s) 949, 951
BshFI GGCC 2 cut(s) 119, 1338
BsiHKAI GWGCWC 1 cut(s) 574
BsiHKCI CYCGRG 1 cut(s) 193
BsiSI CCGG 9 cut(s) 163, 194, 334, 346, 359, 382, 1055, 1271, 1425
BslFI GGGAC 2 cut(s) 1314, 1337
BslI CCNNNNNNNGG 7 cut(s) 100, 193, 282, 364, 442, 1004, 1271
BsmAI GTCTC 5 cut(s) 124, 425, 698, 1371, 1378
BsmBI CGTCTC 1 cut(s) 1378
BsmFI GGGAC 2 cut(s) 1314, 1337
BsnI GGCC 2 cut(s) 119, 1338
Bso31I GGTCTC 3 cut(s) 124, 425, 1371
BsoBI CYCGRG 1 cut(s) 193
Bsp1286I GDGCHC 2 cut(s) 201, 574
Bsp1407I TGTACA 3 cut(s) 319, 976, 1242
Bsp143I GATC 2 cut(s) 24, 183
Bsp1720I GCTNAGC 1 cut(s) 1235
Bsp19I CCATGG 2 cut(s) 1113, 1368
BspACI CCGC 2 cut(s) 1316, 1421
BspANI GGCC 2 cut(s) 119, 1338
BspCNI CTCAG 2 cut(s) 127, 1227
BspFNI CGCG 2 cut(s) 949, 951
BspLI GGNNCC 2 cut(s) 185, 200
BspMAI CTGCAG 1 cut(s) 604
BspPI GGATC 3 cut(s) 19, 178, 191
BspTI CTTAAG 1 cut(s) 287
BspTNI GGTCTC 3 cut(s) 124, 425, 1371
BsrDI GCAATG 2 cut(s) 539, 1417
BsrGI TGTACA 3 cut(s) 319, 976, 1242
BsrI ACTGG 2 cut(s) 430, 663
BssECI CCNNGG 6 cut(s) 193, 194, 1055, 1113, 1190, 1368
BssHII GCGCGC 1 cut(s) 947
BssMI GATC 2 cut(s) 24, 183
BssT1I CCWWGG 2 cut(s) 1113, 1368
Bst2UI CCWGG 2 cut(s) 1192, 1340
Bst4CI ACNGT 2 cut(s) 310, 1328
Bst6I CTCTTC 2 cut(s) 663, 1392
BstAFI CTTAAG 1 cut(s) 287
BstAPI GCANNNNNTGC 1 cut(s) 1094
BstAUI TGTACA 3 cut(s) 319, 976, 1242
BstC8I GCNNGC 2 cut(s) 696, 949
BstDEI CTNAG 2 cut(s) 114, 1235
BstDSI CCRYGG 2 cut(s) 1113, 1368
BstF5I GGATG 7 cut(s) 159, 553, 748, 894, 1076, 1153, 1360
BstFNI CGCG 2 cut(s) 949, 951
BstHHI GCGC 2 cut(s) 949, 951
BstKTI GATC 2 cut(s) 27, 186
BstMAI GTCTC 5 cut(s) 124, 425, 698, 1371, 1378
BstMBI GATC 2 cut(s) 24, 183
BstMWI GCNNNNNNNGC 7 cut(s) 147, 272, 755, 953, 994, 1094, 1313
BstNI CCWGG 2 cut(s) 1192, 1340
BstSCI CCNGG 9 cut(s) 192, 193, 332, 357, 1054, 1190, 1270, 1338, 1423
BstSFI CTRYAG 3 cut(s) 600, 939, 1029
BstUI CGCG 2 cut(s) 949, 951
BstV1I GCAGC 1 cut(s) 1006
BstX2I RGATCY 1 cut(s) 183
BstYI RGATCY 1 cut(s) 183
BsuRI GGCC 2 cut(s) 119, 1338
BtgI CCRYGG 2 cut(s) 1113, 1368
BtsCI GGATG 7 cut(s) 159, 553, 748, 894, 1076, 1153, 1360
BtsIMutI CAGTG 2 cut(s) 670, 675
Cac8I GCNNGC 2 cut(s) 696, 949
CfoI GCGC 2 cut(s) 949, 951
Cfr13I GGNCC 2 cut(s) 379, 827
Cfr9I CCCGGG 1 cut(s) 193
Csp6I GTAC 5 cut(s) 320, 977, 1043, 1243, 1303
CviAII CATG 3 cut(s) 1114, 1155, 1369
CviQI GTAC 5 cut(s) 320, 977, 1043, 1243, 1303
DdeI CTNAG 2 cut(s) 114, 1235
DpnI GATC 2 cut(s) 26, 185
DpnII GATC 2 cut(s) 24, 183
Eam1104I CTCTTC 2 cut(s) 663, 1392
EarI CTCTTC 2 cut(s) 663, 1392
Eco130I CCWWGG 2 cut(s) 1113, 1368
Eco147I AGGCCT 1 cut(s) 1338
Eco24I GRGCYC 1 cut(s) 201
Eco31I GGTCTC 3 cut(s) 124, 425, 1371
Eco47I GGWCC 2 cut(s) 379, 827
Eco88I CYCGRG 1 cut(s) 193
EcoRI GAATTC 2 cut(s) 656, 910
EcoRII CCWGG 2 cut(s) 1190, 1338
EcoT14I CCWWGG 2 cut(s) 1113, 1368
EcoT22I ATGCAT 1 cut(s) 634
EcoT38I GRGCYC 1 cut(s) 201
ErhI CCWWGG 2 cut(s) 1113, 1368
Esp3I CGTCTC 1 cut(s) 1378
FaeI CATG 3 cut(s) 1117, 1158, 1372
FaiI YATR 9 cut(s) 69, 554, 714, 836, 882, 1115, 1156, 1179, 1370
FalI AAGNNNNNCTT 2 cut(s) 1223, 1255
FaqI GGGAC 2 cut(s) 1314, 1337
FatI CATG 3 cut(s) 1113, 1154, 1368
Fnu4HI GCNGC 1 cut(s) 995
FokI GGATG 7 cut(s) 146, 560, 755, 901, 1063, 1160, 1367
FriOI GRGCYC 1 cut(s) 201
Fsp4HI GCNGC 1 cut(s) 995
FspBI CTAG 2 cut(s) 267, 1098
GlaI GCGC 2 cut(s) 948, 950
GluI GCNGC 1 cut(s) 995
GsuI CTGGAG 1 cut(s) 447
HaeIII GGCC 2 cut(s) 119, 1338
HapII CCGG 9 cut(s) 163, 194, 334, 346, 359, 382, 1055, 1271, 1425
HhaI GCGC 2 cut(s) 949, 951
Hin1II CATG 3 cut(s) 1117, 1158, 1372
Hin6I GCGC 2 cut(s) 947, 949
HinP1I GCGC 2 cut(s) 947, 949
HpaII CCGG 9 cut(s) 163, 194, 334, 346, 359, 382, 1055, 1271, 1425
HphI GGTGA 5 cut(s) 115, 638, 652, 1138, 1410
Hpy166II GTNNAC 3 cut(s) 675, 1284, 1303
Hpy188I TCNGA 6 cut(s) 24, 183, 297, 466, 781, 934
Hpy188III TCNNGA 2 cut(s) 16, 1331
Hpy8I GTNNAC 3 cut(s) 675, 1284, 1303
Hpy99I CGWCG 1 cut(s) 625
HpyAV CCTTC 4 cut(s) 153, 433, 797, 1328
HpyCH4III ACNGT 2 cut(s) 310, 1328
HpyCH4V TGCA 5 cut(s) 177, 401, 602, 632, 988
HpyF10VI GCNNNNNNNGC 7 cut(s) 147, 272, 755, 953, 994, 1094, 1313
HpyF3I CTNAG 2 cut(s) 114, 1235
Hsp92II CATG 3 cut(s) 1117, 1158, 1372
HspAI GCGC 2 cut(s) 947, 949
Kzo9I GATC 2 cut(s) 24, 183
LmnI GCTCC 3 cut(s) 155, 204, 413
Lsp1109I GCAGC 1 cut(s) 1006
LweI GCATC 4 cut(s) 319, 410, 619, 879
MaeI CTAG 2 cut(s) 267, 1098
MaeIII GTNAC 4 cut(s) 103, 217, 304, 1100
MalI GATC 2 cut(s) 26, 185
MboI GATC 2 cut(s) 24, 183
MboII GAAGA 6 cut(s) 74, 256, 662, 680, 1141, 1409
MfeI CAATTG 1 cut(s) 846
MflI RGATCY 1 cut(s) 183
MhlI GDGCHC 2 cut(s) 201, 574
MlyI GAGTC 5 cut(s) 28, 100, 470, 1266, 1373
MmeI TCCRAC 4 cut(s) 253, 444, 1200, 1354
MnlI CCTC 7 cut(s) 96, 182, 264, 492, 946, 1062, 1209
Mph1103I ATGCAT 1 cut(s) 634
MseI TTAA 4 cut(s) 258, 288, 792, 1122
MslI CAYNNNNRTG 2 cut(s) 327, 723
MspCI CTTAAG 1 cut(s) 287
MspI CCGG 9 cut(s) 163, 194, 334, 346, 359, 382, 1055, 1271, 1425
MspR9I CCNGG 9 cut(s) 194, 195, 334, 359, 1056, 1192, 1272, 1340, 1425
MunI CAATTG 1 cut(s) 846
MvaI CCWGG 2 cut(s) 1192, 1340
MvnI CGCG 2 cut(s) 949, 951
MwoI GCNNNNNNNGC 7 cut(s) 147, 272, 755, 953, 994, 1094, 1313
NciI CCSGG 7 cut(s) 194, 195, 334, 359, 1056, 1272, 1425
NcoI CCATGG 2 cut(s) 1113, 1368
NdeII GATC 2 cut(s) 24, 183
NlaIII CATG 3 cut(s) 1117, 1158, 1372
NlaIV GGNNCC 2 cut(s) 185, 200
NmuCI GTSAC 3 cut(s) 103, 217, 1100
NsiI ATGCAT 1 cut(s) 634
PauI GCGCGC 1 cut(s) 947
PceI AGGCCT 1 cut(s) 1338
PfeI GAWTC 6 cut(s) 292, 446, 596, 770, 969, 1275
PflMI CCANNNNNTGG 1 cut(s) 442
PkrI GCNGC 1 cut(s) 996
PleI GAGTC 5 cut(s) 27, 100, 469, 1265, 1372
PpsI GAGTC 5 cut(s) 27, 100, 469, 1265, 1372
PsiI TTATAA 1 cut(s) 836
Psp6I CCWGG 2 cut(s) 1190, 1338
PspGI CCWGG 2 cut(s) 1190, 1338
PspN4I GGNNCC 2 cut(s) 185, 200
PspPI GGNCC 2 cut(s) 379, 827
PstI CTGCAG 1 cut(s) 604
PsuI RGATCY 1 cut(s) 183
PteI GCGCGC 1 cut(s) 947
RsaI GTAC 5 cut(s) 321, 978, 1044, 1244, 1304
RsaNI GTAC 5 cut(s) 320, 977, 1043, 1243, 1303
RseI CAYNNNNRTG 2 cut(s) 327, 723
SaqAI TTAA 4 cut(s) 258, 288, 792, 1122
SatI GCNGC 1 cut(s) 995
Sau3AI GATC 2 cut(s) 24, 183
Sau96I GGNCC 2 cut(s) 379, 827
SchI GAGTC 5 cut(s) 28, 100, 470, 1266, 1373
ScrFI CCNGG 9 cut(s) 194, 195, 334, 359, 1056, 1192, 1272, 1340, 1425
SduI GDGCHC 2 cut(s) 201, 574
SfaNI GCATC 4 cut(s) 319, 410, 619, 879
SfcI CTRYAG 3 cut(s) 600, 939, 1029
SinI GGWCC 2 cut(s) 379, 827
SmaI CCCGGG 1 cut(s) 195
SmiMI CAYNNNNRTG 2 cut(s) 327, 723
SmlI CTYRAG 2 cut(s) 287, 1213
SmoI CTYRAG 2 cut(s) 287, 1213
SseBI AGGCCT 1 cut(s) 1338
SsiI CCGC 2 cut(s) 1316, 1421
SspMI CTAG 2 cut(s) 267, 1098
StuI AGGCCT 1 cut(s) 1338
StyD4I CCNGG 9 cut(s) 192, 193, 332, 357, 1054, 1190, 1270, 1338, 1423
StyI CCWWGG 2 cut(s) 1113, 1368
TaaI ACNGT 2 cut(s) 310, 1328
TaqI TCGA 3 cut(s) 354, 620, 1362
TatI WGTACW 4 cut(s) 319, 976, 1042, 1242
TfiI GAWTC 6 cut(s) 292, 446, 596, 770, 969, 1275
Tru1I TTAA 4 cut(s) 258, 288, 792, 1122
Tru9I TTAA 4 cut(s) 258, 288, 792, 1122
TscAI CASTG 2 cut(s) 670, 682
TseFI GTSAC 3 cut(s) 103, 217, 1100
TseI GCWGC 1 cut(s) 994
Tsp45I GTSAC 3 cut(s) 103, 217, 1100
TspDTI ATGAA 4 cut(s) 669, 762, 1038, 1263
TspMI CCCGGG 1 cut(s) 193
TspRI CASTG 2 cut(s) 670, 682
Van91I CCANNNNNTGG 1 cut(s) 442
Vha464I CTTAAG 1 cut(s) 287
VpaK11BI GGWCC 2 cut(s) 379, 827
XapI RAATTY 4 cut(s) 484, 656, 910, 1132
XcmI CCANNNNNNNNNTGG 1 cut(s) 742
XmaI CCCGGG 1 cut(s) 193
XspI CTAG 2 cut(s) 267, 1098
Zsp2I ATGCAT 1 cut(s) 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.