Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003591

Physical Location & Seq

Genomic Coordinates Forward (+)

35420641 .. 35431864

Gene Structure 11224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00027840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2028 bp

ATGCCCACCTCAGCTTCGGCCTCCGTCTCGGTCTCGGCCTCCGCCTCTTCAACCACCGCCACCGGCCCCAATTCCGATCTTCTCACCCGCCTCAACTCCCCCGACTCCCAAGTCCAGCTCAAGGCTCTTAGGGAGCTCAAGAACCGCATCATCGGCAATCGCACCAAGAAGCTTTCCTTCGTCAAGCTCGGCCTCGTCCCTGCCGTCTCCGCCATCCTCGCCTCTAAAGCCCAGGCCCACTCCCACTCCCACTCCGATCACGATTGTAATCTCCTTGTTCAGTCCGCCGCTGCCCTTGGAAGCTTCGCCTGCGGTTTCGATGCCGGCGTCCGAGCCGTTCTCGATGCCGGCGCCTGCCCTACCCTCTTCTTGCTTTTATCGCATCCTGATGACAAGGTTGTGGACGCTGGTGCACGTTCTTTAAGAATGATTTATCAATCGAACCTGGCTCCAAAGTGTGATTTCCTTCAAGACAAAAACATGGAATTTCTTCTTTCATTATTGAATAGTGAGAATGAAAATGTTACAGGACTTGGTGCAAGTATAGTTATACATTCTTGTGAGACTATAACAGAAAAGATGGCACTATGTCATGCTGGTGTTTTGAAGAAGCTAGTTAGCCTTCTTGAAGGTTCTCCAAGTCAGAGAGATAATAGTTTAGAATCTCTAGCCACAATTATGAAGGACAATGATGAAGCTGTTTCAGAGTTTGTGGGATGTGAAAGTGGAAGAGCTTTGAGTTCTGTTATAGAATTAACAAAGGATAGACATCCCCGCACAAGATTTTTGGCTTCGACATGTTTGATTGCTATAAGGAATACTTCTTCTTGCTATTTGCAAGATATGGGCATTAAAACCAAGCTGGTTCATCTCTTACTTGAACTTCATGATGATCCCGGTCAAGTTGGAGACGAAGCTCCCTTTGCATTTTCTAGTTTAATTTCTCAAAAAGTCGATCTACAGAAAATAGCACTTGAGGCAAATGCTATTGATAAACTCTACAACCACTTGCAAAAGAATCATTTACATCCGAAACGTTTCCAAGGACTATTATTGGCACTGGCTGATCTATGCTCAAAGTTGGAGAGCTGTAGGTCTAGATTCCTGTCGTTGCAGGCATTGAACTTGGTATCTAAAGCCCTGACTCATGATAGTTCTGACGTACGTACTGCAGCTTGCATTTGCTTAAGATGCGTTTCTCGCTCTATCAAGAATTTGTGTGCAGGTAATTTTATGAATGAAATGATTGTCCCTCCCTTGGTTCGGCTGTTGGATGACCCTTCTATTTCAGTCCAGGTTGCAGCTCTGAGTGCTGTTGGAAACATTGTTGTTGATTTTACCACACATAGGTCATTATTTCTACAGTGTGGAGGCGTGAAACAGCTTGTTCAGTTATCGAGATCAATGGATTCAACTTTGAGATTAAATGCTTTATGGGCTTTAAGGAACCTGATGTGCCTTGCAGACTACATATGTAAACAAGGGATATTCATGGAGCTCACAGCTTCCTCATTAGCAAGTCTTATCTGTGACCCTGAGCCTTTTGTCCAAGAGCAGGCTCTAGCACTCATCCGCAATCTTGTTGATGGATGTATGAACTCAGTTGAGCTTGTATTCGCTGAAGATGGTATAATATTAGATGCTGTTGGAAGGCAGCTGCAGAGTGCTTCAAGAGATGAAATTTGGATACAGGGATTGTATGTGCTTAGCAATGTTGCAAGTGGAAATGAAGTTCACAAGGAAGCTGTTATGCATCAACTAGTACCACAGGCGGACAATGGGGCCCAATCTCTTATTCTGAAGTTTTTGCAGAGTAATGAAAGCCAGTTACGTATAGCTGCTGTCTGGACCATTGTTAATCTTACTTTTCCATCCACTCCTAATGCATTTAGCCGTTTTGTAAAACTACACAATGCTGGCATAGTTTCTCAAGTGAAGAGCATGGCCAGTGATCCTTGCCTAGACGTTAAGCTTCGGGTAAAATCAGCACTCGGGCAATTTAAGACCTTCAGTGATGGCTCAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm DUF4220

Protein Analysis

675

Amino Acids

73.05

Weight (kDa)

6.99

Isoelectric Point (pI)

42.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arm	PF00514	416 - 443	9.2e-06	Armadillo/beta-catenin-like repeat
Arm	PF00514	454 - 484	1e-07	Armadillo/beta-catenin-like repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003591)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51350
fragaria_vesca	FvH4_3g28860 FvH4_3g28860 FvH4_3g28860 FvH4_3g28860 FvH4_3g28860 FvH4_3g28860 FvH4_3g28860 FvH4_3g28860 FvH4_3g28860
malus_domestica	MD03G1175100.v1.1 MD11G1193200.v1.1
prunus_persica	Prupe.4G249300_v2.0.a1 Prupe.4G249300_v2.0.a1 Prupe.4G249300_v2.0.a1 Prupe.4G249300_v2.0.a1 Prupe.4G249300_v2.0.a1 Prupe.4G249300_v2.0.a1 Prupe.4G249300_v2.0.a1 Prupe.4G249300_v2.0.a1 Prupe.4G249300_v2.0.a1
pyrus_communis	pycom03g13260
rosa_chinensis	RchiOBHm_Chr5g0052041
rosa_laevigata	RLG00000034847
rosa_multiflora	Rmu_sc0012304.1_g000003 Rmu_sc0012304.1_g000004
rosa_roxburghii	Rroxscaffold_1G00027840
rosa_rugosa	Rorug05G0275300 Rorug05G0275400 Rorug05G0275500
rosa_samantha	Rh5AG347300 Rh5BG358200 Rh5CG383700 Rh5DG373500
rosa_wichuraiana	Rw5G032820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	110
Acc36I	ACCTGC	1 cut(s)	1214
AccB1I	GGYRCC	1 cut(s)	350
AclI	AACGTT	1 cut(s)	1036
AclWI	GGATC	2 cut(s)	887, 1946
AcoI	YGGCCR	1 cut(s)	1944
AcsI	RAATTY	3 cut(s)	485, 1213, 1680
AcuI	CTGAAG	3 cut(s)	1641, 1820, 1993
AcyI	GRCGYC	2 cut(s)	327, 351
AfaI	GTAC	3 cut(s)	1164, 1168, 1764
AfiI	CCNNNNNNNGG	5 cut(s)	121, 1258, 1263, 1347, 1555
AflII	CTTAAG	1 cut(s)	1186
AflIII	ACRYGT	1 cut(s)	797
AgsI	TTSAA	9 cut(s)	51, 470, 505, 607, 629, 881, 1123, 1413, 1671
AhlI	ACTAGT	1 cut(s)	1759
AjnI	CCWGG	3 cut(s)	231, 444, 1293
AjuI	GAANNNNNNNTTGG	2 cut(s)	1779, 1811
AloI	GAACNNNNNNTCC	2 cut(s)	1716, 1748
Alw21I	GWGCWC	3 cut(s)	138, 415, 1500
Alw26I	GTCTC	5 cut(s)	31, 37, 211, 557, 903
Alw44I	GTGCAC	1 cut(s)	411
AlwI	GGATC	2 cut(s)	887, 1946
Ama87I	CYCGRG	1 cut(s)	1991
AoxI	GGCC	7 cut(s)	18, 36, 64, 190, 234, 1782, 1944
ApaI	GGGCCC	1 cut(s)	1786
ApaLI	GTGCAC	1 cut(s)	411
ApeKI	GCWGC	6 cut(s)	290, 1172, 1301, 1654, 1657, 1838
ApoI	RAATTY	3 cut(s)	485, 1213, 1680
Asp700I	GAANNNNTTC	2 cut(s)	489, 1037
AspLEI	GCGC	1 cut(s)	353
AspS9I	GGNCC	5 cut(s)	65, 235, 1782, 1783, 1848
AsuC2I	CCSGG	1 cut(s)	897
AsuHPI	GGTGA	1 cut(s)	76
AvaI	CYCGRG	1 cut(s)	1991
AvaII	GGWCC	1 cut(s)	1848
BaeGI	GKGCMC	2 cut(s)	415, 1786
BalI	TGGCCA	1 cut(s)	1946
BanI	GGYRCC	1 cut(s)	350
BanII	GRGCYC	3 cut(s)	138, 1500, 1786
Bbv12I	GWGCWC	3 cut(s)	138, 415, 1500
BbvCI	CCTCAGC	1 cut(s)	10
BbvI	GCAGC	6 cut(s)	277, 1184, 1313, 1644, 1666, 1825
BccI	CCATC	6 cut(s)	221, 574, 1580, 1619, 1879, 2009
BceAI	ACGGC	3 cut(s)	188, 320, 1878
BciT130I	CCWGG	3 cut(s)	233, 446, 1295
BciVI	GTATCC	1 cut(s)	1680
BcnI	CCSGG	1 cut(s)	897
BcoDI	GTCTC	5 cut(s)	31, 37, 211, 557, 903
BcuI	ACTAGT	1 cut(s)	1759
BfaI	CTAG	7 cut(s)	614, 668, 933, 1098, 1562, 1760, 1961
BfmI	CTRYAG	5 cut(s)	959, 1090, 1170, 1361, 1658
BfoI	RGCGCY	1 cut(s)	354
BfrI	CTTAAG	1 cut(s)	1186
BfuAI	ACCTGC	1 cut(s)	1214
BfuI	GTATCC	1 cut(s)	1680
BisI	GCNGC	7 cut(s)	288, 291, 1173, 1302, 1655, 1658, 1839
BlpI	GCTNAGC	1 cut(s)	1706
BlsI	GCNGC	7 cut(s)	289, 292, 1174, 1303, 1656, 1659, 1840
Bme1390I	CCNGG	4 cut(s)	233, 446, 897, 1295
Bme18I	GGWCC	1 cut(s)	1848
BmeT110I	CYCGRG	1 cut(s)	1991
BmgT120I	GGNCC	5 cut(s)	65, 235, 1782, 1783, 1848
BmiI	GGNNCC	6 cut(s)	67, 352, 450, 1448, 1783, 1784
BmrFI	CCNGG	4 cut(s)	233, 446, 897, 1295
BmsI	GCATC	7 cut(s)	156, 310, 334, 391, 1181, 1630, 1762
BplI	GAGNNNNNCTC	2 cut(s)	324, 356
Bpu10I	CCTNAGC	2 cut(s)	10, 1536
Bpu1102I	GCTNAGC	1 cut(s)	1706
BpuEI	CTTGAG	4 cut(s)	104, 122, 995, 1914
BpuMI	CCSGG	1 cut(s)	897
BsaAI	YACGTR	2 cut(s)	1166, 1832
BsaBI	GATNNNNATC	2 cut(s)	267, 768
BsaHI	GRCGYC	2 cut(s)	327, 351
BsaI	GGTCTC	1 cut(s)	37
BsaJI	CCNNGG	4 cut(s)	231, 295, 1042, 1257
BsaXI	ACNNNNNCTCC	4 cut(s)	230, 236, 260, 266
Bsc4I	CCNNNNNNNGG	5 cut(s)	121, 1258, 1263, 1347, 1555
Bse118I	RCCGGY	3 cut(s)	62, 323, 347
Bse1I	ACTGG	3 cut(s)	1065, 1825, 1947
Bse3DI	GCAATG	1 cut(s)	1717
Bse8I	GATNNNNATC	2 cut(s)	267, 768
BseBI	CCWGG	3 cut(s)	233, 446, 1295
BseDI	CCNNGG	4 cut(s)	231, 295, 1042, 1257
BseGI	GGATG	9 cut(s)	213, 382, 722, 769, 1027, 1279, 1569, 1595, 1871
BseJI	GATNNNNATC	2 cut(s)	267, 768
BseLI	CCNNNNNNNGG	5 cut(s)	121, 1258, 1263, 1347, 1555
BseMI	GCAATG	1 cut(s)	1717
BseMII	CTCAG	4 cut(s)	24, 1298, 1527, 1614
BseNI	ACTGG	3 cut(s)	1065, 1825, 1947
BseSI	GKGCMC	2 cut(s)	415, 1786
BseXI	GCAGC	6 cut(s)	277, 1184, 1313, 1644, 1666, 1825
BsgI	GTGCAG	1 cut(s)	1242
BshFI	GGCC	7 cut(s)	20, 38, 66, 192, 236, 1784, 1946
BshNI	GGYRCC	1 cut(s)	350
BsiHKAI	GWGCWC	3 cut(s)	138, 415, 1500
BsiHKCI	CYCGRG	1 cut(s)	1991
BsiSI	CCGG	4 cut(s)	63, 324, 348, 897
BsiWI	CGTACG	1 cut(s)	1162
BslFI	GGGAC	2 cut(s)	182, 1235
BslI	CCNNNNNNNGG	5 cut(s)	121, 1258, 1263, 1347, 1555
BsmAI	GTCTC	5 cut(s)	31, 37, 211, 557, 903
BsmBI	CGTCTC	3 cut(s)	31, 211, 903
BsmFI	GGGAC	2 cut(s)	182, 1235
BsnI	GGCC	7 cut(s)	20, 38, 66, 192, 236, 1784, 1946
Bso31I	GGTCTC	1 cut(s)	37
BsoBI	CYCGRG	1 cut(s)	1991
Bsp120I	GGGCCC	1 cut(s)	1782
Bsp1286I	GDGCHC	4 cut(s)	138, 415, 1500, 1786
Bsp143I	GATC	7 cut(s)	76, 256, 892, 955, 1066, 1400, 1951
Bsp1720I	GCTNAGC	1 cut(s)	1706
BspANI	GGCC	7 cut(s)	20, 38, 66, 192, 236, 1784, 1946
BspCNI	CTCAG	4 cut(s)	23, 1299, 1528, 1613
BspHI	TCATGA	2 cut(s)	886, 1147
BspLI	GGNNCC	6 cut(s)	67, 352, 450, 1448, 1783, 1784
BspMAI	CTGCAG	2 cut(s)	1174, 1662
BspMI	ACCTGC	1 cut(s)	1214
BspPI	GGATC	2 cut(s)	887, 1946
BspQI	GCTCTTC	2 cut(s)	724, 1931
BspT107I	GGYRCC	1 cut(s)	350
BspTI	CTTAAG	1 cut(s)	1186
BspTNI	GGTCTC	1 cut(s)	37
BsrDI	GCAATG	1 cut(s)	1717
BsrFI	RCCGGY	3 cut(s)	62, 323, 347
BsrI	ACTGG	3 cut(s)	1065, 1825, 1947
BssAI	RCCGGY	3 cut(s)	62, 323, 347
BssECI	CCNNGG	4 cut(s)	231, 295, 1042, 1257
BssMI	GATC	7 cut(s)	76, 256, 892, 955, 1066, 1400, 1951
BssNI	GRCGYC	2 cut(s)	327, 351
BssT1I	CCWWGG	3 cut(s)	295, 1042, 1257
Bst2UI	CCWGG	3 cut(s)	233, 446, 1295
Bst4CI	ACNGT	1 cut(s)	1365
Bst6I	CTCTTC	4 cut(s)	52, 371, 724, 1931
BstACI	GRCGYC	2 cut(s)	327, 351
BstAFI	CTTAAG	1 cut(s)	1186
BstBAI	YACGTR	2 cut(s)	1166, 1832
BstC8I	GCNNGC	8 cut(s)	310, 325, 349, 355, 1116, 1177, 1557, 1918
BstDEI	CTNAG	6 cut(s)	10, 128, 1307, 1536, 1600, 1706
BstF5I	GGATG	9 cut(s)	213, 382, 722, 769, 1027, 1279, 1569, 1595, 1871
BstH2I	RGCGCY	1 cut(s)	354
BstHHI	GCGC	1 cut(s)	353
BstKTI	GATC	7 cut(s)	79, 259, 895, 958, 1069, 1403, 1954
BstMAI	GTCTC	5 cut(s)	31, 37, 211, 557, 903
BstMBI	GATC	7 cut(s)	76, 256, 892, 955, 1066, 1400, 1951
BstNI	CCWGG	3 cut(s)	233, 446, 1295
BstNSI	RCATGY	1 cut(s)	801
BstSCI	CCNGG	4 cut(s)	231, 444, 895, 1293
BstSFI	CTRYAG	5 cut(s)	959, 1090, 1170, 1361, 1658
BstSLI	GKGCMC	2 cut(s)	415, 1786
BstSNI	TACGTA	2 cut(s)	1166, 1832
BstV1I	GCAGC	6 cut(s)	277, 1184, 1313, 1644, 1666, 1825
BsuI	GTATCC	1 cut(s)	1680
BsuRI	GGCC	7 cut(s)	20, 38, 66, 192, 236, 1784, 1946
BtsCI	GGATG	9 cut(s)	213, 382, 722, 769, 1027, 1279, 1569, 1595, 1871
BtsIMutI	CAGTG	4 cut(s)	1058, 1370, 1954, 2017
BveI	ACCTGC	1 cut(s)	1214
Cac8I	GCNNGC	8 cut(s)	310, 325, 349, 355, 1116, 1177, 1557, 1918
CciI	TCATGA	2 cut(s)	886, 1147
CfoI	GCGC	1 cut(s)	353
Cfr10I	RCCGGY	3 cut(s)	62, 323, 347
Cfr13I	GGNCC	5 cut(s)	65, 235, 1782, 1783, 1848
CseI	GACGC	2 cut(s)	316, 413
Csp6I	GTAC	3 cut(s)	1163, 1167, 1763
CviAII	CATG	8 cut(s)	481, 593, 798, 887, 1148, 1492, 1942, 2025
CviQI	GTAC	3 cut(s)	1163, 1167, 1763
DdeI	CTNAG	6 cut(s)	10, 128, 1307, 1536, 1600, 1706
DinI	GGCGCC	1 cut(s)	352
DpnI	GATC	7 cut(s)	78, 258, 894, 957, 1068, 1402, 1953
DpnII	GATC	7 cut(s)	76, 256, 892, 955, 1066, 1400, 1951
DrdI	GACNNNNNNGTC	1 cut(s)	110
DseDI	GACNNNNNNGTC	1 cut(s)	110
EaeI	YGGCCR	1 cut(s)	1944
Eam1104I	CTCTTC	4 cut(s)	52, 371, 724, 1931
EarI	CTCTTC	4 cut(s)	52, 371, 724, 1931
EciI	GGCGGA	4 cut(s)	31, 199, 274, 1787
Ecl136II	GAGCTC	2 cut(s)	136, 1498
Eco105I	TACGTA	2 cut(s)	1166, 1832
Eco130I	CCWWGG	3 cut(s)	295, 1042, 1257
Eco24I	GRGCYC	3 cut(s)	138, 1500, 1786
Eco31I	GGTCTC	1 cut(s)	37
Eco47I	GGWCC	1 cut(s)	1848
Eco53kI	GAGCTC	2 cut(s)	136, 1498
Eco57I	CTGAAG	3 cut(s)	1641, 1820, 1993
Eco88I	CYCGRG	1 cut(s)	1991
EcoICRI	GAGCTC	2 cut(s)	136, 1498
EcoO109I	RGGNCCY	1 cut(s)	1782
EcoRII	CCWGG	3 cut(s)	231, 444, 1293
EcoT14I	CCWWGG	3 cut(s)	295, 1042, 1257
EcoT22I	ATGCAT	2 cut(s)	1755, 1888
EcoT38I	GRGCYC	3 cut(s)	138, 1500, 1786
EgeI	GGCGCC	1 cut(s)	352
EheI	GGCGCC	1 cut(s)	352
ErhI	CCWWGG	3 cut(s)	295, 1042, 1257
Esp3I	CGTCTC	3 cut(s)	31, 211, 903
FaeI	CATG	8 cut(s)	484, 596, 801, 890, 1151, 1495, 1945, 2028
FalI	AAGNNNNNCTT	4 cut(s)	161, 193, 805, 837
FaqI	GGGAC	2 cut(s)	182, 1235
FatI	CATG	8 cut(s)	480, 592, 797, 886, 1147, 1491, 1941, 2024
FauI	CCCGC	2 cut(s)	95, 782
FauNDI	CATATG	1 cut(s)	1472
Fnu4HI	GCNGC	7 cut(s)	288, 291, 1173, 1302, 1655, 1658, 1839
FokI	GGATG	9 cut(s)	200, 369, 729, 756, 1014, 1286, 1556, 1602, 1858
FriOI	GRGCYC	3 cut(s)	138, 1500, 1786
Fsp4HI	GCNGC	7 cut(s)	288, 291, 1173, 1302, 1655, 1658, 1839
FspBI	CTAG	7 cut(s)	614, 668, 933, 1098, 1562, 1760, 1961
GlaI	GCGC	1 cut(s)	352
GluI	GCNGC	7 cut(s)	288, 291, 1173, 1302, 1655, 1658, 1839
HaeII	RGCGCY	1 cut(s)	354
HaeIII	GGCC	7 cut(s)	20, 38, 66, 192, 236, 1784, 1946
HapII	CCGG	4 cut(s)	63, 324, 348, 897
HgaI	GACGC	2 cut(s)	316, 413
HhaI	GCGC	1 cut(s)	353
Hin1I	GRCGYC	2 cut(s)	327, 351
Hin1II	CATG	8 cut(s)	484, 596, 801, 890, 1151, 1495, 1945, 2028
Hin6I	GCGC	1 cut(s)	351
HinP1I	GCGC	1 cut(s)	351
HindIII	AAGCTT	3 cut(s)	170, 301, 1970
HinfI	GANTC	6 cut(s)	104, 662, 1018, 1101, 1144, 1409
HpaII	CCGG	4 cut(s)	63, 324, 348, 897
HphI	GGTGA	1 cut(s)	76
Hpy166II	GTNNAC	4 cut(s)	403, 413, 1478, 1735
Hpy188I	TCNGA	9 cut(s)	76, 256, 332, 645, 706, 1032, 1159, 1308, 1800
Hpy8I	GTNNAC	4 cut(s)	403, 413, 1478, 1735
HpyAV	CCTTC	8 cut(s)	187, 476, 623, 632, 676, 1290, 1644, 2017
HpyCH4III	ACNGT	1 cut(s)	1365
HpyCH4IV	ACGT	6 cut(s)	415, 1036, 1161, 1165, 1831, 1965
HpyF3I	CTNAG	6 cut(s)	10, 128, 1307, 1536, 1600, 1706
HpySE526I	ACGT	6 cut(s)	415, 1036, 1161, 1165, 1831, 1965
Hsp92I	GRCGYC	2 cut(s)	327, 351
Hsp92II	CATG	8 cut(s)	484, 596, 801, 890, 1151, 1495, 1945, 2028
HspAI	GCGC	1 cut(s)	351
KasI	GGCGCC	1 cut(s)	350
KroI	GCCGGC	2 cut(s)	323, 347
KroNI	GCCGGC	2 cut(s)	325, 349
Kzo9I	GATC	7 cut(s)	76, 256, 892, 955, 1066, 1400, 1951
LguI	GCTCTTC	2 cut(s)	724, 1931
LmnI	GCTCC	4 cut(s)	133, 454, 922, 1495
Lsp1109I	GCAGC	6 cut(s)	277, 1184, 1313, 1644, 1666, 1825
LweI	GCATC	7 cut(s)	156, 310, 334, 391, 1181, 1630, 1762
MaeI	CTAG	7 cut(s)	614, 668, 933, 1098, 1562, 1760, 1961
MaeII	ACGT	6 cut(s)	415, 1036, 1161, 1165, 1831, 1965
MaeIII	GTNAC	3 cut(s)	523, 1529, 1827
MalI	GATC	7 cut(s)	78, 258, 894, 957, 1068, 1402, 1953
MboI	GATC	7 cut(s)	76, 256, 892, 955, 1066, 1400, 1951
MboII	GAAGA	9 cut(s)	39, 71, 358, 482, 619, 741, 816, 1634, 1948
MhlI	GDGCHC	4 cut(s)	138, 415, 1500, 1786
MlsI	TGGCCA	1 cut(s)	1946
MluCI	AATT	9 cut(s)	70, 485, 675, 752, 939, 1213, 1228, 1680, 1997
MluNI	TGGCCA	1 cut(s)	1946
Mly113I	GGCGCC	1 cut(s)	351
MlyI	GAGTC	2 cut(s)	98, 1138
MmeI	TCCRAC	5 cut(s)	886, 1062, 1251, 1297, 1627
Mox20I	TGGCCA	1 cut(s)	1946
Mph1103I	ATGCAT	2 cut(s)	1755, 1888
MroNI	GCCGGC	2 cut(s)	323, 347
MroXI	GAANNNNTTC	2 cut(s)	489, 1037
MscI	TGGCCA	1 cut(s)	1946
MslI	CAYNNNNRTG	4 cut(s)	387, 558, 597, 677
Msp20I	TGGCCA	1 cut(s)	1946
MspA1I	CMGCKG	2 cut(s)	290, 1657
MspCI	CTTAAG	1 cut(s)	1186
MspI	CCGG	4 cut(s)	63, 324, 348, 897
MspR9I	CCNGG	4 cut(s)	233, 446, 897, 1295
MvaI	CCWGG	3 cut(s)	233, 446, 1295
NaeI	GCCGGC	2 cut(s)	325, 349
NarI	GGCGCC	1 cut(s)	351
NciI	CCSGG	1 cut(s)	897
NdeI	CATATG	1 cut(s)	1472
NdeII	GATC	7 cut(s)	76, 256, 892, 955, 1066, 1400, 1951
NgoMIV	GCCGGC	2 cut(s)	323, 347
NlaIII	CATG	8 cut(s)	484, 596, 801, 890, 1151, 1495, 1945, 2028
NlaIV	GGNNCC	6 cut(s)	67, 352, 450, 1448, 1783, 1784
NmeAIII	GCCGAG	2 cut(s)	14, 168
NmuCI	GTSAC	1 cut(s)	1529
NsiI	ATGCAT	2 cut(s)	1755, 1888
NspI	RCATGY	1 cut(s)	801
PagI	TCATGA	2 cut(s)	886, 1147
PciI	ACATGT	1 cut(s)	797
PciSI	GCTCTTC	2 cut(s)	724, 1931
PcsI	WCGNNNNNNNCGW	2 cut(s)	201, 324
PdiI	GCCGGC	2 cut(s)	325, 349
PdmI	GAANNNNTTC	2 cut(s)	489, 1037
PfeI	GAWTC	4 cut(s)	662, 1018, 1101, 1409
Pfl23II	CGTACG	1 cut(s)	1162
PkrI	GCNGC	7 cut(s)	289, 292, 1174, 1303, 1656, 1659, 1840
PleI	GAGTC	2 cut(s)	98, 1138
PluTI	GGCGCC	1 cut(s)	354
PpsI	GAGTC	2 cut(s)	98, 1138
Ppu21I	YACGTR	2 cut(s)	1166, 1832
PscI	ACATGT	1 cut(s)	797
Psp124BI	GAGCTC	2 cut(s)	138, 1500
Psp1406I	AACGTT	1 cut(s)	1036
Psp6I	CCWGG	3 cut(s)	231, 444, 1293
PspGI	CCWGG	3 cut(s)	231, 444, 1293
PspLI	CGTACG	1 cut(s)	1162
PspN4I	GGNNCC	6 cut(s)	67, 352, 450, 1448, 1783, 1784
PspOMI	GGGCCC	1 cut(s)	1782
PspPI	GGNCC	5 cut(s)	65, 235, 1782, 1783, 1848
PstI	CTGCAG	2 cut(s)	1174, 1662
PvuII	CAGCTG	1 cut(s)	1657
RsaI	GTAC	3 cut(s)	1164, 1168, 1764
RsaNI	GTAC	3 cut(s)	1163, 1167, 1763
RseI	CAYNNNNRTG	4 cut(s)	387, 558, 597, 677
SacI	GAGCTC	2 cut(s)	138, 1500
SapI	GCTCTTC	2 cut(s)	724, 1931
SatI	GCNGC	7 cut(s)	288, 291, 1173, 1302, 1655, 1658, 1839
Sau3AI	GATC	7 cut(s)	76, 256, 892, 955, 1066, 1400, 1951
Sau96I	GGNCC	5 cut(s)	65, 235, 1782, 1783, 1848
SchI	GAGTC	2 cut(s)	98, 1138
ScrFI	CCNGG	4 cut(s)	233, 446, 897, 1295
SduI	GDGCHC	4 cut(s)	138, 415, 1500, 1786
SfaNI	GCATC	7 cut(s)	156, 310, 334, 391, 1181, 1630, 1762
SfcI	CTRYAG	5 cut(s)	959, 1090, 1170, 1361, 1658
SfoI	GGCGCC	1 cut(s)	352
SinI	GGWCC	1 cut(s)	1848
SmiMI	CAYNNNNRTG	4 cut(s)	387, 558, 597, 677
SmlI	CTYRAG	5 cut(s)	119, 137, 974, 1186, 1929
SmoI	CTYRAG	5 cut(s)	119, 137, 974, 1186, 1929
SnaBI	TACGTA	2 cut(s)	1166, 1832
SpeI	ACTAGT	1 cut(s)	1759
Sse9I	AATT	9 cut(s)	70, 485, 675, 752, 939, 1213, 1228, 1680, 1997
SspDI	GGCGCC	1 cut(s)	350
SspI	AATATT	1 cut(s)	1635
SspMI	CTAG	7 cut(s)	614, 668, 933, 1098, 1562, 1760, 1961
SstI	GAGCTC	2 cut(s)	138, 1500
StyD4I	CCNGG	4 cut(s)	231, 444, 895, 1293
StyI	CCWWGG	3 cut(s)	295, 1042, 1257
TaaI	ACNGT	1 cut(s)	1365
TaiI	ACGT	6 cut(s)	418, 1039, 1164, 1168, 1834, 1968
TaqI	TCGA	6 cut(s)	318, 342, 440, 794, 954, 1397
TaqII	GACCGA	1 cut(s)	19
TasI	AATT	9 cut(s)	70, 485, 675, 752, 939, 1213, 1228, 1680, 1997
TauI	GCSGC	1 cut(s)	290
TfiI	GAWTC	4 cut(s)	662, 1018, 1101, 1409
TscAI	CASTG	4 cut(s)	1065, 1370, 1954, 2017
TseFI	GTSAC	1 cut(s)	1529
TseI	GCWGC	6 cut(s)	290, 1172, 1301, 1654, 1657, 1838
Tsp45I	GTSAC	1 cut(s)	1529
TspGWI	ACGGA	1 cut(s)	13
TspRI	CASTG	4 cut(s)	1065, 1370, 1954, 2017
Vha464I	CTTAAG	1 cut(s)	1186
VneI	GTGCAC	1 cut(s)	411
VpaK11BI	GGWCC	1 cut(s)	1848
XapI	RAATTY	3 cut(s)	485, 1213, 1680
XbaI	TCTAGA	1 cut(s)	1097
XceI	RCATGY	1 cut(s)	801
XmnI	GAANNNNTTC	2 cut(s)	489, 1037
XspI	CTAG	7 cut(s)	614, 668, 933, 1098, 1562, 1760, 1961
Zsp2I	ATGCAT	2 cut(s)	1755, 1888

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.