Rorug05G0275300

Armadillo repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003591
Physical Location & Seq
Reverse (-)
31088018 .. 31088630
613 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0275300.1

Sequence Viewer

Length: 237 bp
ATGGATCTCCAAGAAGGTAACATGTCCAAGGCTTTAGTTGCGTTAAATCCAGAAGCTGCTTCTCTGCCTATTCCCAAGCTCAAGAATGTCAGTCGACTACGAACAGAGCACCAAGTGTATGAACTACCAGATTCACATCCACTTTTGGCAGGGATGGACAGACGGGAACGTGATGATCCAAGCCCATACCTTCTTGCAATATGGACGCCAGGTAAGCTCGGAAGAGAATATTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm DUF4220

Protein Analysis

78

Amino Acids

8.8

Weight (kDa)

6.06

Isoelectric Point (pI)

40.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 94
AclWI GGATC 2 cut(s) 12, 170
AcyI GRCGYC 1 cut(s) 206
AdeI CACNNNGTG 1 cut(s) 115
AflIII ACRYGT 1 cut(s) 21
AjnI CCWGG 1 cut(s) 208
AluBI AGCT 3 cut(s) 56, 79, 217
AluI AGCT 3 cut(s) 56, 79, 217
Alw21I GWGCWC 1 cut(s) 111
AlwI GGATC 2 cut(s) 12, 170
AlwNI CAGNNNCTG 1 cut(s) 56
ApeKI GCWGC 1 cut(s) 56
Bbv12I GWGCWC 1 cut(s) 111
BbvI GCAGC 1 cut(s) 43
BccI CCATC 1 cut(s) 148
BciT130I CCWGG 1 cut(s) 210
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
Bme1390I CCNGG 1 cut(s) 210
BmrFI CCNGG 1 cut(s) 210
BpuEI CTTGAG 1 cut(s) 65
BsaBI GATNNNNATC 1 cut(s) 135
BsaHI GRCGYC 1 cut(s) 206
BsaJI CCNNGG 1 cut(s) 27
Bse8I GATNNNNATC 1 cut(s) 135
BseBI CCWGG 1 cut(s) 210
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 2 cut(s) 136, 159
BseJI GATNNNNATC 1 cut(s) 135
BseXI GCAGC 1 cut(s) 43
BsiHKAI GWGCWC 1 cut(s) 111
Bsp1286I GDGCHC 1 cut(s) 111
Bsp143I GATC 2 cut(s) 4, 175
BspPI GGATC 2 cut(s) 12, 170
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 2 cut(s) 4, 175
BssNI GRCGYC 1 cut(s) 206
BssT1I CCWWGG 1 cut(s) 27
Bst2UI CCWGG 1 cut(s) 210
Bst6I CTCTTC 1 cut(s) 217
BstACI GRCGYC 1 cut(s) 206
BstF5I GGATG 2 cut(s) 136, 159
BstKTI GATC 2 cut(s) 7, 178
BstMBI GATC 2 cut(s) 4, 175
BstMWI GCNNNNNNNGC 2 cut(s) 38, 214
BstNI CCWGG 1 cut(s) 210
BstNSI RCATGY 1 cut(s) 25
BstSCI CCNGG 1 cut(s) 208
BstV1I GCAGC 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BtsCI GGATG 2 cut(s) 136, 159
CaiI CAGNNNCTG 1 cut(s) 56
CseI GACGC 1 cut(s) 214
CviAII CATG 1 cut(s) 22
CviJI RGCY 5 cut(s) 32, 56, 79, 183, 217
CviKI_1 RGCY 5 cut(s) 32, 56, 79, 183, 217
DpnI GATC 2 cut(s) 6, 177
DpnII GATC 2 cut(s) 4, 175
DraIII CACNNNGTG 1 cut(s) 115
Eam1104I CTCTTC 1 cut(s) 217
EarI CTCTTC 1 cut(s) 217
Eco130I CCWWGG 1 cut(s) 27
EcoRII CCWGG 1 cut(s) 208
EcoT14I CCWWGG 1 cut(s) 27
ErhI CCWWGG 1 cut(s) 27
FaeI CATG 1 cut(s) 25
FaiI YATR 4 cut(s) 23, 120, 187, 202
FatI CATG 1 cut(s) 21
FblI GTMKAC 1 cut(s) 94
Fnu4HI GCNGC 1 cut(s) 57
FokI GGATG 2 cut(s) 123, 166
Fsp4HI GCNGC 1 cut(s) 57
GluI GCNGC 1 cut(s) 57
HgaI GACGC 1 cut(s) 214
Hin1I GRCGYC 1 cut(s) 206
Hin1II CATG 1 cut(s) 25
HincII GTYRAC 1 cut(s) 95
HindII GTYRAC 1 cut(s) 95
HinfI GANTC 1 cut(s) 131
Hpy166II GTNNAC 1 cut(s) 95
Hpy188I TCNGA 1 cut(s) 221
Hpy188III TCNNGA 3 cut(s) 50, 82, 234
Hpy8I GTNNAC 1 cut(s) 95
HpyAV CCTTC 2 cut(s) 8, 200
HpyCH4IV ACGT 1 cut(s) 169
HpyCH4V TGCA 1 cut(s) 197
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 214
HpySE526I ACGT 1 cut(s) 169
Hsp92I GRCGYC 1 cut(s) 206
Hsp92II CATG 1 cut(s) 25
Kzo9I GATC 2 cut(s) 4, 175
LpnPI CCDG 5 cut(s) 63, 135, 141, 195, 222
Lsp1109I GCAGC 1 cut(s) 43
MaeII ACGT 1 cut(s) 169
MaeIII GTNAC 1 cut(s) 17
MalI GATC 2 cut(s) 6, 177
MboI GATC 2 cut(s) 4, 175
MboII GAAGA 1 cut(s) 234
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 111
MseI TTAA 1 cut(s) 44
MspR9I CCNGG 1 cut(s) 210
MvaI CCWGG 1 cut(s) 210
MwoI GCNNNNNNNGC 2 cut(s) 38, 214
NdeII GATC 2 cut(s) 4, 175
NlaIII CATG 1 cut(s) 25
NspI RCATGY 1 cut(s) 25
PciI ACATGT 1 cut(s) 21
PfeI GAWTC 1 cut(s) 131
PkrI GCNGC 1 cut(s) 58
PscI ACATGT 1 cut(s) 21
Psp6I CCWGG 1 cut(s) 208
PspGI CCWGG 1 cut(s) 208
PstNI CAGNNNCTG 1 cut(s) 56
PsuI RGATCY 1 cut(s) 4
SalI GTCGAC 1 cut(s) 93
SaqAI TTAA 1 cut(s) 44
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 2 cut(s) 4, 175
ScrFI CCNGG 1 cut(s) 210
SduI GDGCHC 1 cut(s) 111
SetI ASST 7 cut(s) 19, 58, 81, 172, 192, 214, 219
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
SspI AATATT 1 cut(s) 230
StyD4I CCNGG 1 cut(s) 208
StyI CCWWGG 1 cut(s) 27
TaiI ACGT 1 cut(s) 172
TaqI TCGA 1 cut(s) 94
TfiI GAWTC 1 cut(s) 131
Tru1I TTAA 1 cut(s) 44
Tru9I TTAA 1 cut(s) 44
TseI GCWGC 1 cut(s) 56
TspDTI ATGAA 1 cut(s) 135
XceI RCATGY 1 cut(s) 25
XmiI GTMKAC 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.