Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012304.1

Orthogroup ID

OG0003591

Physical Location & Seq

Genomic Coordinates Forward (+)

27257 .. 28458

Gene Structure 1202 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012304.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

atggcagatgcaagtgtattgagttttgtgtttggggcacctaaggaggataacgatcttcatgtcaggagtatgggtgcttttaagggattgtatgtgcttagcaatgttgcaagtggaaatgaagttcacaaggaagctgttatgcatcaactagtaccacaggcagacaatggggcccaatctcttattctgaagtttctgcagagtaatgaaagccagttacgtatagctgctgtctggaccattgttaatcttactttgccatccactcctaatgcatttagccgttttgtaaaactacacaatgctggcatagtttctcaagtgaagagcatggccagtgatccttgcctagacgttaagcttcgggtaaaatcagcactcgggcaatttaagaccttcagtgatggctcaacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm DUF4220

Protein Analysis

140

Amino Acids

15.1

Weight (kDa)

8.82

Isoelectric Point (pI)

36.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003591)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51350
fragaria_vesca	FvH4_3g28860 FvH4_3g28860 FvH4_3g28860 FvH4_3g28860 FvH4_3g28860 FvH4_3g28860 FvH4_3g28860 FvH4_3g28860 FvH4_3g28860
malus_domestica	MD03G1175100.v1.1 MD11G1193200.v1.1
prunus_persica	Prupe.4G249300_v2.0.a1 Prupe.4G249300_v2.0.a1 Prupe.4G249300_v2.0.a1 Prupe.4G249300_v2.0.a1 Prupe.4G249300_v2.0.a1 Prupe.4G249300_v2.0.a1 Prupe.4G249300_v2.0.a1 Prupe.4G249300_v2.0.a1 Prupe.4G249300_v2.0.a1
pyrus_communis	pycom03g13260
rosa_chinensis	RchiOBHm_Chr5g0052041
rosa_laevigata	RLG00000034847
rosa_multiflora	Rmu_sc0012304.1_g000003 Rmu_sc0012304.1_g000004
rosa_roxburghii	Rroxscaffold_1G00027840
rosa_rugosa	Rorug05G0275300 Rorug05G0275400 Rorug05G0275500
rosa_samantha	Rh5AG347300 Rh5BG358200 Rh5CG383700 Rh5DG373500
rosa_wichuraiana	Rw5G032820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	37
AclWI	GGATC	1 cut(s)	341
AcoI	YGGCCR	1 cut(s)	339
AcuI	CTGAAG	2 cut(s)	215, 388
AfaI	GTAC	1 cut(s)	159
AhlI	ACTAGT	1 cut(s)	154
AjuI	GAANNNNNNNTTGG	2 cut(s)	174, 206
AloI	GAACNNNNNNTCC	2 cut(s)	111, 143
AluBI	AGCT	3 cut(s)	140, 233, 367
AluI	AGCT	3 cut(s)	140, 233, 367
AlwI	GGATC	1 cut(s)	341
Ama87I	CYCGRG	1 cut(s)	386
AoxI	GGCC	2 cut(s)	177, 339
ApaI	GGGCCC	1 cut(s)	181
ApeKI	GCWGC	1 cut(s)	233
AspS9I	GGNCC	3 cut(s)	177, 178, 243
AvaI	CYCGRG	1 cut(s)	386
AvaII	GGWCC	1 cut(s)	243
AxyI	CCTNAGG	1 cut(s)	42
BaeGI	GKGCMC	2 cut(s)	40, 181
BalI	TGGCCA	1 cut(s)	341
BanI	GGYRCC	1 cut(s)	37
BanII	GRGCYC	1 cut(s)	181
BbvI	GCAGC	1 cut(s)	220
BccI	CCATC	2 cut(s)	274, 404
BceAI	ACGGC	1 cut(s)	273
BcuI	ACTAGT	1 cut(s)	154
BfaI	CTAG	2 cut(s)	155, 356
BfmI	CTRYAG	1 cut(s)	203
BisI	GCNGC	1 cut(s)	234
BlpI	GCTNAGC	1 cut(s)	101
BlsI	GCNGC	1 cut(s)	235
Bme18I	GGWCC	1 cut(s)	243
BmeT110I	CYCGRG	1 cut(s)	386
BmgT120I	GGNCC	3 cut(s)	177, 178, 243
BmiI	GGNNCC	3 cut(s)	39, 178, 179
BmsI	GCATC	1 cut(s)	157
Bpu1102I	GCTNAGC	1 cut(s)	101
BpuEI	CTTGAG	1 cut(s)	309
BsaAI	YACGTR	1 cut(s)	227
BsaBI	GATNNNNATC	1 cut(s)	54
BsaXI	ACNNNNNCTCC	2 cut(s)	61, 91
Bse1I	ACTGG	2 cut(s)	220, 342
Bse21I	CCTNAGG	1 cut(s)	42
Bse3DI	GCAATG	1 cut(s)	112
Bse8I	GATNNNNATC	1 cut(s)	54
BseGI	GGATG	1 cut(s)	266
BseJI	GATNNNNATC	1 cut(s)	54
BseMI	GCAATG	1 cut(s)	112
BseNI	ACTGG	2 cut(s)	220, 342
BseSI	GKGCMC	2 cut(s)	40, 181
BseXI	GCAGC	1 cut(s)	220
BshFI	GGCC	2 cut(s)	179, 341
BshNI	GGYRCC	1 cut(s)	37
BsiHKCI	CYCGRG	1 cut(s)	386
BsnI	GGCC	2 cut(s)	179, 341
BsoBI	CYCGRG	1 cut(s)	386
Bsp120I	GGGCCC	1 cut(s)	177
Bsp1286I	GDGCHC	2 cut(s)	40, 181
Bsp143I	GATC	2 cut(s)	55, 346
Bsp1720I	GCTNAGC	1 cut(s)	101
BspANI	GGCC	2 cut(s)	179, 341
BspLI	GGNNCC	3 cut(s)	39, 178, 179
BspMAI	CTGCAG	1 cut(s)	207
BspPI	GGATC	1 cut(s)	341
BspQI	GCTCTTC	1 cut(s)	326
BspT107I	GGYRCC	1 cut(s)	37
BsrDI	GCAATG	1 cut(s)	112
BsrI	ACTGG	2 cut(s)	220, 342
BssMI	GATC	2 cut(s)	55, 346
Bst6I	CTCTTC	1 cut(s)	326
BstBAI	YACGTR	1 cut(s)	227
BstC8I	GCNNGC	1 cut(s)	313
BstDEI	CTNAG	2 cut(s)	42, 101
BstF5I	GGATG	1 cut(s)	266
BstKTI	GATC	2 cut(s)	58, 349
BstMBI	GATC	2 cut(s)	55, 346
BstSFI	CTRYAG	1 cut(s)	203
BstSLI	GKGCMC	2 cut(s)	40, 181
BstSNI	TACGTA	1 cut(s)	227
BstV1I	GCAGC	1 cut(s)	220
Bsu36I	CCTNAGG	1 cut(s)	42
BsuRI	GGCC	2 cut(s)	179, 341
BtsCI	GGATG	1 cut(s)	266
BtsIMutI	CAGTG	2 cut(s)	349, 412
Cac8I	GCNNGC	1 cut(s)	313
Cfr13I	GGNCC	3 cut(s)	177, 178, 243
Csp6I	GTAC	1 cut(s)	158
CviAII	CATG	3 cut(s)	62, 337, 420
CviJI	RGCY	8 cut(s)	140, 179, 219, 233, 288, 341, 367, 414
CviKI_1	RGCY	8 cut(s)	140, 179, 219, 233, 288, 341, 367, 414
CviQI	GTAC	1 cut(s)	158
DdeI	CTNAG	2 cut(s)	42, 101
DpnI	GATC	2 cut(s)	57, 348
DpnII	GATC	2 cut(s)	55, 346
EaeI	YGGCCR	1 cut(s)	339
Eam1104I	CTCTTC	1 cut(s)	326
EarI	CTCTTC	1 cut(s)	326
Eco105I	TACGTA	1 cut(s)	227
Eco24I	GRGCYC	1 cut(s)	181
Eco47I	GGWCC	1 cut(s)	243
Eco57I	CTGAAG	2 cut(s)	215, 388
Eco81I	CCTNAGG	1 cut(s)	42
Eco88I	CYCGRG	1 cut(s)	386
EcoO109I	RGGNCCY	1 cut(s)	177
EcoT22I	ATGCAT	2 cut(s)	150, 283
EcoT38I	GRGCYC	1 cut(s)	181
FaeI	CATG	3 cut(s)	65, 340, 423
FaiI	YATR	8 cut(s)	63, 74, 96, 146, 230, 317, 338, 421
FatI	CATG	3 cut(s)	61, 336, 419
Fnu4HI	GCNGC	1 cut(s)	234
FokI	GGATG	1 cut(s)	253
FriOI	GRGCYC	1 cut(s)	181
Fsp4HI	GCNGC	1 cut(s)	234
FspBI	CTAG	2 cut(s)	155, 356
GluI	GCNGC	1 cut(s)	234
HaeIII	GGCC	2 cut(s)	179, 341
Hin1II	CATG	3 cut(s)	65, 340, 423
HindIII	AAGCTT	1 cut(s)	365
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	1 cut(s)	195
Hpy188III	TCNNGA	2 cut(s)	67, 241
Hpy8I	GTNNAC	1 cut(s)	130
HpyAV	CCTTC	1 cut(s)	412
HpyCH4IV	ACGT	2 cut(s)	226, 360
HpyCH4V	TGCA	5 cut(s)	11, 113, 148, 205, 281
HpyF3I	CTNAG	2 cut(s)	42, 101
HpySE526I	ACGT	2 cut(s)	226, 360
Hsp92II	CATG	3 cut(s)	65, 340, 423
Kzo9I	GATC	2 cut(s)	55, 346
LguI	GCTCTTC	1 cut(s)	326
LpnPI	CCDG	6 cut(s)	52, 149, 226, 233, 297, 355
Lsp1109I	GCAGC	1 cut(s)	220
LweI	GCATC	1 cut(s)	157
MaeI	CTAG	2 cut(s)	155, 356
MaeII	ACGT	2 cut(s)	226, 360
MaeIII	GTNAC	1 cut(s)	222
MalI	GATC	2 cut(s)	57, 348
MboI	GATC	2 cut(s)	55, 346
MboII	GAAGA	2 cut(s)	50, 343
MhlI	GDGCHC	2 cut(s)	40, 181
MlsI	TGGCCA	1 cut(s)	341
MluCI	AATT	1 cut(s)	392
MluNI	TGGCCA	1 cut(s)	341
MnlI	CCTC	1 cut(s)	40
Mox20I	TGGCCA	1 cut(s)	341
Mph1103I	ATGCAT	2 cut(s)	150, 283
MscI	TGGCCA	1 cut(s)	341
MseI	TTAA	4 cut(s)	84, 252, 363, 396
Msp20I	TGGCCA	1 cut(s)	341
NdeII	GATC	2 cut(s)	55, 346
NlaIII	CATG	3 cut(s)	65, 340, 423
NlaIV	GGNNCC	3 cut(s)	39, 178, 179
NsiI	ATGCAT	2 cut(s)	150, 283
PciSI	GCTCTTC	1 cut(s)	326
PkrI	GCNGC	1 cut(s)	235
Ppu21I	YACGTR	1 cut(s)	227
PspN4I	GGNNCC	3 cut(s)	39, 178, 179
PspOMI	GGGCCC	1 cut(s)	177
PspPI	GGNCC	3 cut(s)	177, 178, 243
PstI	CTGCAG	1 cut(s)	207
RsaI	GTAC	1 cut(s)	159
RsaNI	GTAC	1 cut(s)	158
SapI	GCTCTTC	1 cut(s)	326
SaqAI	TTAA	4 cut(s)	84, 252, 363, 396
SatI	GCNGC	1 cut(s)	234
Sau3AI	GATC	2 cut(s)	55, 346
Sau96I	GGNCC	3 cut(s)	177, 178, 243
SduI	GDGCHC	2 cut(s)	40, 181
SetI	ASST	7 cut(s)	43, 142, 229, 235, 363, 369, 404
SfaNI	GCATC	1 cut(s)	157
SfcI	CTRYAG	1 cut(s)	203
SinI	GGWCC	1 cut(s)	243
SmlI	CTYRAG	1 cut(s)	324
SmoI	CTYRAG	1 cut(s)	324
SnaBI	TACGTA	1 cut(s)	227
SpeI	ACTAGT	1 cut(s)	154
Sse9I	AATT	1 cut(s)	392
SspMI	CTAG	2 cut(s)	155, 356
TaiI	ACGT	2 cut(s)	229, 363
TasI	AATT	1 cut(s)	392
Tru1I	TTAA	4 cut(s)	84, 252, 363, 396
Tru9I	TTAA	4 cut(s)	84, 252, 363, 396
TscAI	CASTG	2 cut(s)	349, 412
TseI	GCWGC	1 cut(s)	233
TspDTI	ATGAA	3 cut(s)	50, 138, 228
TspRI	CASTG	2 cut(s)	349, 412
VpaK11BI	GGWCC	1 cut(s)	243
XspI	CTAG	2 cut(s)	155, 356
Zsp2I	ATGCAT	2 cut(s)	150, 283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.