Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003591

Physical Location & Seq

Genomic Coordinates Forward (+)

31095410 .. 31097278

Gene Structure 1869 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0275500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGAATACAACCATCACATTTTCACATTGTTTTGATGAATTGATCAAAACTGAAGACACTAAACCAAAACCTATGTATTGTTCAGAATGTAGCTCTGGCGCCAATTACGATTTTACCCCTCCTCCAGTTCATCTCAGCTTTCACTTTCAAAATCCAAGTCCATATGTTGAGCAAACCAAACTAAACACTCTGTTCCAAATGCTCAAGCTTCTCTCTTCACCTCATAAAACCCAAACCCTAAACCCTAACAAACCATTCCTCTTCCTCTCTCGCCTCCTCAGCCAATCTCTCTCTAGCAATCCCTACGATTACGATCCTCCGTTTTCTCCAGCTTCCAAACCCCAAAACCCCAAAAACAAAAAGACCCACAATGCCGACCCGAACAAAGACCCGACCACCCAGCCTCTCAAATCGGACCTTCCCTTCGACTTCAGCTACTCCTACTCGGAGACCCCGTCGGCCGAACCCATTTCTTTCCGGGAGTCGCCAAAGTTCTCTCCTTTCGGGCCGGGACGGCTTGATAGGAAATGGACCGGGACGGTCGCCCCGGCCCAACAAGAAGTGGACTTGAACCGGCTGGCCCAGGAGAGAAAACGGGTTCTCGGAGACCCGCTTTCGGAGGAGGAAGTGGCTGAGCTGGTGGAACGGTATCGGCATAGTGATTGCTCTCGCCAAATCAATTTGGGAAAGGGAGGAGTTACTCATAACATGTTAGATGACATCCACAACCATTGGAAGCGGGCTGAAGCTGTGAGGATCAAGTGTTTGGGGGTGCCAACTCTTGATATGGACAATGTTTGCTTCCACCTTGAGGACAAGTCTGGAGGGGCAATTATCTACCGGCATATTAATGTCCTTATTTTATACCGTGGTCGAAATTATGATCCGAAAAATCAGCCAGTAATACCTGTAATGCTCTGGAAGCCCTATCCTCCGATATATCCAAAGCTTGTGAAGAATGTTGCTGATGGCTTGACATTTGAAGAGACAAAGGAATTACGAAACAGAGGACTAAATTCCCTCCCTCTCATGAAACTTACTAGAAATGGTGTGTATGTGAATGTTGTGGACAGAGTAAAGGAGGCCTTCAAGACTGAAGAGGTAGTGAGACTAGACTGCACCCATGTTGGTACCAGTGATTGCAAAAGAATAGGTGCAAAATTGAGGGACCTTGCACCTTGCATCCCCCTTTTGTTCAAAGATGAGCAGATTATACTGTGGAGGGGGAAACAAGATCAAGAACAAGACTCCAAGTGCGTTGATAGATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm DUF4220

Protein Analysis

423

Amino Acids

48.33

Weight (kDa)

8.53

Isoelectric Point (pI)

49.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRS1_YhbY	PF01985	205 - 290	2.9e-17	CRS1 / YhbY (CRM) domain
CRS1_YhbY	PF01985	325 - 408	1.8e-12	CRS1 / YhbY (CRM) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003591)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51350
fragaria_vesca	FvH4_3g28860 FvH4_3g28860 FvH4_3g28860 FvH4_3g28860 FvH4_3g28860 FvH4_3g28860 FvH4_3g28860 FvH4_3g28860 FvH4_3g28860
malus_domestica	MD03G1175100.v1.1 MD11G1193200.v1.1
prunus_persica	Prupe.4G249300_v2.0.a1 Prupe.4G249300_v2.0.a1 Prupe.4G249300_v2.0.a1 Prupe.4G249300_v2.0.a1 Prupe.4G249300_v2.0.a1 Prupe.4G249300_v2.0.a1 Prupe.4G249300_v2.0.a1 Prupe.4G249300_v2.0.a1 Prupe.4G249300_v2.0.a1
pyrus_communis	pycom03g13260
rosa_chinensis	RchiOBHm_Chr5g0052041
rosa_laevigata	RLG00000034847
rosa_multiflora	Rmu_sc0012304.1_g000003 Rmu_sc0012304.1_g000004
rosa_roxburghii	Rroxscaffold_1G00027840
rosa_rugosa	Rorug05G0275300 Rorug05G0275400 Rorug05G0275500
rosa_samantha	Rh5AG347300 Rh5BG358200 Rh5CG383700 Rh5DG373500
rosa_wichuraiana	Rw5G032820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1130
AccB1I	GGYRCC	3 cut(s)	98, 772, 1130
AciI	CCGC	2 cut(s)	611, 739
AclWI	GGATC	3 cut(s)	308, 764, 878
AcoI	YGGCCR	1 cut(s)	459
AcsI	RAATTY	1 cut(s)	1015
AcuI	CTGAAG	4 cut(s)	72, 415, 765, 1116
AcyI	GRCGYC	1 cut(s)	99
AfaI	GTAC	1 cut(s)	1132
AfiI	CCNNNNNNNGG	2 cut(s)	616, 811
AflIII	ACRYGT	1 cut(s)	708
AgsI	TTSAA	5 cut(s)	149, 571, 983, 1090, 1198
AjnI	CCWGG	1 cut(s)	582
AluBI	AGCT	8 cut(s)	93, 138, 208, 332, 435, 637, 749, 949
AluI	AGCT	8 cut(s)	93, 138, 208, 332, 435, 637, 749, 949
Alw26I	GTCTC	4 cut(s)	443, 600, 980, 1102
AlwI	GGATC	3 cut(s)	308, 764, 878
AoxI	GGCC	5 cut(s)	459, 506, 549, 579, 1083
ApoI	RAATTY	1 cut(s)	1015
ArsI	GACNNNNNNTTYG	4 cut(s)	142, 174, 407, 439
AseI	ATTAAT	1 cut(s)	849
Asp718I	GGTACC	1 cut(s)	1130
AspLEI	GCGC	1 cut(s)	101
AspS9I	GGNCC	6 cut(s)	415, 506, 531, 550, 580, 1168
AsuC2I	CCSGG	4 cut(s)	479, 510, 535, 548
AsuHPI	GGTGA	1 cut(s)	210
AvaII	GGWCC	3 cut(s)	415, 531, 1168
BanI	GGYRCC	3 cut(s)	98, 772, 1130
BbsI	GAAGAC	1 cut(s)	60
BbvCI	CCTCAGC	1 cut(s)	278
BccI	CCATC	2 cut(s)	20, 962
BceAI	ACGGC	1 cut(s)	530
BciT130I	CCWGG	1 cut(s)	584
BclI	TGATCA	1 cut(s)	42
BcnI	CCSGG	4 cut(s)	479, 510, 535, 548
BcoDI	GTCTC	4 cut(s)	443, 600, 980, 1102
BfaI	CTAG	3 cut(s)	294, 1041, 1112
BfoI	RGCGCY	1 cut(s)	102
BglI	GCCNNNNNGGC	1 cut(s)	514
BlpI	GCTNAGC	1 cut(s)	633
Bme1390I	CCNGG	5 cut(s)	479, 510, 535, 548, 584
Bme18I	GGWCC	3 cut(s)	415, 531, 1168
BmgT120I	GGNCC	6 cut(s)	415, 506, 531, 550, 580, 1168
BmiI	GGNNCC	4 cut(s)	100, 774, 1132, 1169
BmrFI	CCNGG	5 cut(s)	479, 510, 535, 548, 584
BmsI	GCATC	1 cut(s)	1191
BpiI	GAAGAC	1 cut(s)	60
BpmI	CTGGAG	3 cut(s)	108, 312, 843
Bpu10I	CCTNAGC	1 cut(s)	278
Bpu1102I	GCTNAGC	1 cut(s)	633
BpuEI	CTTGAG	2 cut(s)	188, 830
BpuMI	CCSGG	4 cut(s)	479, 510, 535, 548
BsaBI	GATNNNNATC	1 cut(s)	312
BsaHI	GRCGYC	1 cut(s)	99
BsaI	GGTCTC	2 cut(s)	443, 600
BsaJI	CCNNGG	3 cut(s)	546, 582, 868
BsaXI	ACNNNNNCTCC	4 cut(s)	106, 136, 440, 470
Bsc4I	CCNNNNNNNGG	2 cut(s)	616, 811
Bse118I	RCCGGY	2 cut(s)	573, 840
Bse1I	ACTGG	3 cut(s)	125, 899, 1134
Bse8I	GATNNNNATC	1 cut(s)	312
BseBI	CCWGG	1 cut(s)	584
BseDI	CCNNGG	3 cut(s)	546, 582, 868
BseGI	GGATG	2 cut(s)	720, 1182
BseJI	GATNNNNATC	1 cut(s)	312
BseLI	CCNNNNNNNGG	2 cut(s)	616, 811
BseMII	CTCAG	3 cut(s)	148, 292, 624
BseNI	ACTGG	3 cut(s)	125, 899, 1134
BseRI	GAGGAG	4 cut(s)	111, 266, 635, 708
BseX3I	CGGCCG	1 cut(s)	459
BseYI	CCCAGC	1 cut(s)	399
BsgI	GTGCAG	1 cut(s)	1102
Bsh1285I	CGRYCG	2 cut(s)	462, 543
BshFI	GGCC	5 cut(s)	461, 508, 551, 581, 1085
BshNI	GGYRCC	3 cut(s)	98, 772, 1130
BsiEI	CGRYCG	2 cut(s)	462, 543
BsiSI	CCGG	6 cut(s)	478, 509, 534, 548, 574, 841
BslFI	GGGAC	3 cut(s)	525, 550, 1181
BslI	CCNNNNNNNGG	2 cut(s)	616, 811
BsmAI	GTCTC	4 cut(s)	443, 600, 980, 1102
BsmFI	GGGAC	3 cut(s)	525, 550, 1181
BsnI	GGCC	5 cut(s)	461, 508, 551, 581, 1085
Bso31I	GGTCTC	2 cut(s)	443, 600
Bsp143I	GATC	6 cut(s)	42, 313, 756, 883, 1234, 1265
Bsp1720I	GCTNAGC	1 cut(s)	633
BspACI	CCGC	2 cut(s)	611, 739
BspANI	GGCC	5 cut(s)	461, 508, 551, 581, 1085
BspCNI	CTCAG	3 cut(s)	147, 291, 625
BspHI	TCATGA	1 cut(s)	1029
BspLI	GGNNCC	4 cut(s)	100, 774, 1132, 1169
BspPI	GGATC	3 cut(s)	308, 764, 878
BspT107I	GGYRCC	3 cut(s)	98, 772, 1130
BspTNI	GGTCTC	2 cut(s)	443, 600
BsrFI	RCCGGY	2 cut(s)	573, 840
BsrI	ACTGG	3 cut(s)	125, 899, 1134
BssAI	RCCGGY	2 cut(s)	573, 840
BssECI	CCNNGG	3 cut(s)	546, 582, 868
BssMI	GATC	6 cut(s)	42, 313, 756, 883, 1234, 1265
BssNI	GRCGYC	1 cut(s)	99
Bst2UI	CCWGG	1 cut(s)	584
Bst4CI	ACNGT	4 cut(s)	541, 648, 869, 1218
Bst6I	CTCTTC	4 cut(s)	220, 266, 978, 1092
BstACI	GRCGYC	1 cut(s)	99
BstC8I	GCNNGC	2 cut(s)	579, 741
BstDEI	CTNAG	3 cut(s)	134, 278, 633
BstDSI	CCRYGG	1 cut(s)	868
BstF5I	GGATG	2 cut(s)	720, 1182
BstH2I	RGCGCY	1 cut(s)	102
BstHHI	GCGC	1 cut(s)	101
BstKTI	GATC	6 cut(s)	45, 316, 759, 886, 1237, 1268
BstMAI	GTCTC	4 cut(s)	443, 600, 980, 1102
BstMBI	GATC	6 cut(s)	42, 313, 756, 883, 1234, 1265
BstMCI	CGRYCG	2 cut(s)	462, 543
BstMWI	GCNNNNNNNGC	3 cut(s)	279, 514, 922
BstNI	CCWGG	1 cut(s)	584
BstNSI	RCATGY	1 cut(s)	712
BstSCI	CCNGG	5 cut(s)	477, 508, 533, 546, 582
BstV2I	GAAGAC	1 cut(s)	60
BstZI	CGGCCG	1 cut(s)	459
BsuRI	GGCC	5 cut(s)	461, 508, 551, 581, 1085
BtgI	CCRYGG	1 cut(s)	868
BtsCI	GGATG	2 cut(s)	720, 1182
BtsIMutI	CAGTG	1 cut(s)	1141
Cac8I	GCNNGC	2 cut(s)	579, 741
CciI	TCATGA	1 cut(s)	1029
CfoI	GCGC	1 cut(s)	101
Cfr10I	RCCGGY	2 cut(s)	573, 840
Cfr13I	GGNCC	6 cut(s)	415, 506, 531, 550, 580, 1168
Csp6I	GTAC	1 cut(s)	1131
CspCI	CAANNNNNGTGG	2 cut(s)	713, 748
CviAII	CATG	3 cut(s)	709, 1030, 1124
CviQI	GTAC	1 cut(s)	1131
DdeI	CTNAG	3 cut(s)	134, 278, 633
DinI	GGCGCC	1 cut(s)	100
DpnI	GATC	6 cut(s)	44, 315, 758, 885, 1236, 1267
DpnII	GATC	6 cut(s)	42, 313, 756, 883, 1234, 1265
EaeI	YGGCCR	1 cut(s)	459
EagI	CGGCCG	1 cut(s)	459
Eam1104I	CTCTTC	4 cut(s)	220, 266, 978, 1092
EarI	CTCTTC	4 cut(s)	220, 266, 978, 1092
EclXI	CGGCCG	1 cut(s)	459
Eco147I	AGGCCT	1 cut(s)	1085
Eco31I	GGTCTC	2 cut(s)	443, 600
Eco47I	GGWCC	3 cut(s)	415, 531, 1168
Eco52I	CGGCCG	1 cut(s)	459
Eco57I	CTGAAG	4 cut(s)	72, 415, 765, 1116
EcoO109I	RGGNCCY	1 cut(s)	1168
EcoRII	CCWGG	1 cut(s)	582
EgeI	GGCGCC	1 cut(s)	100
EheI	GGCGCC	1 cut(s)	100
FaeI	CATG	3 cut(s)	712, 1033, 1127
FalI	AAGNNNNNCTT	2 cut(s)	1070, 1102
FaqI	GGGAC	3 cut(s)	525, 550, 1181
FatI	CATG	3 cut(s)	708, 1029, 1123
FauI	CCCGC	2 cut(s)	618, 732
FauNDI	CATATG	1 cut(s)	163
FbaI	TGATCA	1 cut(s)	42
FokI	GGATG	2 cut(s)	707, 1169
FspBI	CTAG	3 cut(s)	294, 1041, 1112
GlaI	GCGC	1 cut(s)	100
GsaI	CCCAGC	1 cut(s)	403
GsuI	CTGGAG	3 cut(s)	108, 312, 843
HaeII	RGCGCY	1 cut(s)	102
HaeIII	GGCC	5 cut(s)	461, 508, 551, 581, 1085
HapII	CCGG	6 cut(s)	478, 509, 534, 548, 574, 841
HhaI	GCGC	1 cut(s)	101
Hin1I	GRCGYC	1 cut(s)	99
Hin1II	CATG	3 cut(s)	712, 1033, 1127
Hin6I	GCGC	1 cut(s)	99
HinP1I	GCGC	1 cut(s)	99
HindIII	AAGCTT	2 cut(s)	206, 947
HinfI	GANTC	2 cut(s)	482, 1247
HpaII	CCGG	6 cut(s)	478, 509, 534, 548, 574, 841
HphI	GGTGA	1 cut(s)	210
Hpy166II	GTNNAC	2 cut(s)	565, 1069
Hpy188I	TCNGA	7 cut(s)	85, 415, 448, 605, 619, 888, 936
Hpy188III	TCNNGA	6 cut(s)	782, 822, 919, 1030, 1090, 1238
Hpy8I	GTNNAC	2 cut(s)	565, 1069
Hpy99I	CGWCG	1 cut(s)	460
HpyAV	CCTTC	3 cut(s)	428, 433, 1096
HpyCH4III	ACNGT	4 cut(s)	541, 648, 869, 1218
HpyCH4V	TGCA	5 cut(s)	1119, 1143, 1157, 1175, 1182
HpyF10VI	GCNNNNNNNGC	3 cut(s)	279, 514, 922
HpyF3I	CTNAG	3 cut(s)	134, 278, 633
Hsp92I	GRCGYC	1 cut(s)	99
Hsp92II	CATG	3 cut(s)	712, 1033, 1127
HspAI	GCGC	1 cut(s)	99
KasI	GGCGCC	1 cut(s)	98
KpnI	GGTACC	1 cut(s)	1134
Ksp22I	TGATCA	1 cut(s)	42
Kzo9I	GATC	6 cut(s)	42, 313, 756, 883, 1234, 1265
LweI	GCATC	1 cut(s)	1191
MaeI	CTAG	3 cut(s)	294, 1041, 1112
MaeIII	GTNAC	1 cut(s)	697
MalI	GATC	6 cut(s)	44, 315, 758, 885, 1236, 1267
MboI	GATC	6 cut(s)	42, 313, 756, 883, 1234, 1265
MboII	GAAGA	6 cut(s)	65, 207, 253, 967, 995, 1109
MluCI	AATT	8 cut(s)	38, 103, 679, 831, 877, 995, 1015, 1160
Mly113I	GGCGCC	1 cut(s)	99
MlyI	GAGTC	2 cut(s)	491, 1241
MseI	TTAA	1 cut(s)	849
MslI	CAYNNNNRTG	1 cut(s)	849
MspI	CCGG	6 cut(s)	478, 509, 534, 548, 574, 841
MspR9I	CCNGG	5 cut(s)	479, 510, 535, 548, 584
MvaI	CCWGG	1 cut(s)	584
MwoI	GCNNNNNNNGC	3 cut(s)	279, 514, 922
NarI	GGCGCC	1 cut(s)	99
NciI	CCSGG	4 cut(s)	479, 510, 535, 548
NdeI	CATATG	1 cut(s)	163
NdeII	GATC	6 cut(s)	42, 313, 756, 883, 1234, 1265
NlaIII	CATG	3 cut(s)	712, 1033, 1127
NlaIV	GGNNCC	4 cut(s)	100, 774, 1132, 1169
NspI	RCATGY	1 cut(s)	712
PagI	TCATGA	1 cut(s)	1029
PceI	AGGCCT	1 cut(s)	1085
PciI	ACATGT	1 cut(s)	708
PcsI	WCGNNNNNNNCGW	1 cut(s)	452
PflFI	GACNNNGTC	1 cut(s)	454
PfoI	TCCNGGA	1 cut(s)	477
PleI	GAGTC	2 cut(s)	490, 1241
PluTI	GGCGCC	1 cut(s)	102
PpsI	GAGTC	2 cut(s)	490, 1241
PpuMI	RGGWCCY	1 cut(s)	1168
PscI	ACATGT	1 cut(s)	708
PshBI	ATTAAT	1 cut(s)	849
Psp5II	RGGWCCY	1 cut(s)	1168
Psp6I	CCWGG	1 cut(s)	582
PspFI	CCCAGC	1 cut(s)	399
PspGI	CCWGG	1 cut(s)	582
PspN4I	GGNNCC	4 cut(s)	100, 774, 1132, 1169
PspPI	GGNCC	6 cut(s)	415, 506, 531, 550, 580, 1168
PspPPI	RGGWCCY	1 cut(s)	1168
PsyI	GACNNNGTC	1 cut(s)	454
RsaI	GTAC	1 cut(s)	1132
RsaNI	GTAC	1 cut(s)	1131
RseI	CAYNNNNRTG	1 cut(s)	849
SaqAI	TTAA	1 cut(s)	849
Sau3AI	GATC	6 cut(s)	42, 313, 756, 883, 1234, 1265
Sau96I	GGNCC	6 cut(s)	415, 506, 531, 550, 580, 1168
SchI	GAGTC	2 cut(s)	491, 1241
ScrFI	CCNGG	5 cut(s)	479, 510, 535, 548, 584
SfaNI	GCATC	1 cut(s)	1191
SfoI	GGCGCC	1 cut(s)	100
SinI	GGWCC	3 cut(s)	415, 531, 1168
SmiMI	CAYNNNNRTG	1 cut(s)	849
SmlI	CTYRAG	2 cut(s)	203, 809
SmoI	CTYRAG	2 cut(s)	203, 809
Sse9I	AATT	8 cut(s)	38, 103, 679, 831, 877, 995, 1015, 1160
SseBI	AGGCCT	1 cut(s)	1085
SsiI	CCGC	2 cut(s)	611, 739
SspDI	GGCGCC	1 cut(s)	98
SspMI	CTAG	3 cut(s)	294, 1041, 1112
StuI	AGGCCT	1 cut(s)	1085
StyD4I	CCNGG	5 cut(s)	477, 508, 533, 546, 582
TaaI	ACNGT	4 cut(s)	541, 648, 869, 1218
TaqI	TCGA	2 cut(s)	426, 874
TasI	AATT	8 cut(s)	38, 103, 679, 831, 877, 995, 1015, 1160
Tru1I	TTAA	1 cut(s)	849
Tru9I	TTAA	1 cut(s)	849
TscAI	CASTG	1 cut(s)	1141
TspDTI	ATGAA	4 cut(s)	17, 51, 119, 1046
TspGWI	ACGGA	1 cut(s)	309
TspRI	CASTG	1 cut(s)	1141
Tth111I	GACNNNGTC	1 cut(s)	454
VpaK11BI	GGWCC	3 cut(s)	415, 531, 1168
VspI	ATTAAT	1 cut(s)	849
XapI	RAATTY	1 cut(s)	1015
XceI	RCATGY	1 cut(s)	712
XspI	CTAG	3 cut(s)	294, 1041, 1112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.