Rmu_sc0013960.1_g000007

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013960.1
OG0014728
Physical Location & Seq
Reverse (-)
32154 .. 34093
1940 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013960.1_g000007.1.cds

Sequence Viewer

Length: 822 bp
atgctcctgccgcagcttgatcatcatcagagcagcgtcggtatacatagcgcgccgggcgtgccttcgtccttgtccttggaagccatccacgaattcgaagaagactgctacccctactgcgaatctgatgatgaggggagtttgttttctattgatttcaattgtatcaatcacaagacgaagccggatcaaatcattcaggaagaaggggtttatcacgtcgcagtggacctgatgaagagcgagtctagcatggatgcccttctctggacgctcagccaagccgttactcattcatcatccaatatcaaaaccgtgtatcatgtcaaactcgtacatgtctttccaccaattcgattcattccttctccattaggaatgcttccaagaagtaaagtgagtccaaagatggtgaataagtacctggctcaagaaagagacaaaaggaccaagctccttgagaaatacgttgctgcatgcttaaccgccaaggttaaggtcgatgttatatttattgagagtgatacaattgcaaaggccgtcctaaaccttattccaactggaaacgtgaagaatctagttgttggaacaacgatatccaatctcaggaaactgaggtctagaaagggaacaggggttgctaatcagatactacgaaatgcatctccagaaacgacgtcctgctgcgatataaagatcatatgcaagggaaaggaagtggtgattgatcagcttattatcggatcgccttcctcgcgtagcagtaatgcaaattccttgtcaacgcaagaggatcaagatcaagaagtagcaatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

273

Amino Acids

30.1

Weight (kDa)

6.5

Isoelectric Point (pI)

53.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014728)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g32790 FvH4_4g32790
malus_domestica MD13G1022500.v1.1 MD16G1023800.v1.1
prunus_persica Prupe.1G329100_v2.0.a1
pyrus_communis pycom13g02100
rosa_chinensis RchiOBHm_Chr4g0441781
rosa_laevigata RLG00000006066
rosa_multiflora Rmu_sc0013960.1_g000007 Rmu_ssc0000486.1_g000031
rosa_roxburghii Rroxscaffold_5G00382610
rosa_rugosa Rorug04G0336200
rosa_samantha Rh4AG387500 Rh4BG401300 Rh4CG416300 Rh4DG394500
rosa_wichuraiana Rw4G033450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 683
AccI GTMKAC 1 cut(s) 43
AccII CGCG 2 cut(s) 53, 760
AciI CCGC 2 cut(s) 11, 489
AclWI GGATC 3 cut(s) 198, 754, 804
AcsI RAATTY 2 cut(s) 95, 775
AcyI GRCGYC 1 cut(s) 680
AfaI GTAC 2 cut(s) 339, 425
AfiI CCNNNNNNNGG 2 cut(s) 270, 609
AflIII ACRYGT 1 cut(s) 340
AgsI TTSAA 1 cut(s) 163
AjiI CACGTC 1 cut(s) 223
AjnI CCWGG 1 cut(s) 426
AluBI AGCT 3 cut(s) 16, 457, 736
AluI AGCT 3 cut(s) 16, 457, 736
Alw26I GTCTC 1 cut(s) 435
AlwI GGATC 3 cut(s) 198, 754, 804
AoxI GGCC 1 cut(s) 540
ApeKI GCWGC 4 cut(s) 13, 33, 476, 687
ApoI RAATTY 2 cut(s) 95, 775
ArsI GACNNNNNNTTYG 2 cut(s) 767, 799
AspLEI GCGC 2 cut(s) 53, 55
AspS9I GGNCC 2 cut(s) 232, 450
AsuC2I CCSGG 1 cut(s) 57
AsuHPI GGTGA 2 cut(s) 427, 736
AsuII TTCGAA 1 cut(s) 99
AvaII GGWCC 2 cut(s) 232, 450
BbsI GAAGAC 1 cut(s) 111
BbvI GCAGC 4 cut(s) 25, 45, 463, 674
BccI CCATC 2 cut(s) 95, 406
BceAI ACGGC 2 cut(s) 272, 527
BciT130I CCWGG 1 cut(s) 428
BclI TGATCA 2 cut(s) 19, 730
BcnI CCSGG 1 cut(s) 57
BcoDI GTCTC 1 cut(s) 435
BfaI CTAG 3 cut(s) 252, 581, 624
BisI GCNGC 5 cut(s) 11, 14, 34, 477, 688
BlpI GCTNAGC 1 cut(s) 278
BlsI GCNGC 5 cut(s) 12, 15, 35, 478, 689
Bme1390I CCNGG 2 cut(s) 57, 428
Bme18I GGWCC 2 cut(s) 232, 450
BmgBI CACGTC 1 cut(s) 223
BmgT120I GGNCC 2 cut(s) 232, 450
BmrFI CCNGG 2 cut(s) 57, 428
BmsI GCATC 2 cut(s) 250, 674
BpiI GAAGAC 1 cut(s) 111
BpmI CTGGAG 1 cut(s) 654
Bpu1102I GCTNAGC 1 cut(s) 278
Bpu14I TTCGAA 1 cut(s) 99
BpuEI CTTGAG 2 cut(s) 417, 482
BpuMI CCSGG 1 cut(s) 57
BsaBI GATNNNNATC 2 cut(s) 24, 801
BsaHI GRCGYC 1 cut(s) 680
BsaJI CCNNGG 2 cut(s) 78, 492
Bsc4I CCNNNNNNNGG 2 cut(s) 270, 609
Bse1I ACTGG 1 cut(s) 568
Bse3DI GCAATG 1 cut(s) 822
Bse8I GATNNNNATC 2 cut(s) 24, 801
BseBI CCWGG 1 cut(s) 428
BseDI CCNNGG 2 cut(s) 78, 492
BseGI GGATG 3 cut(s) 87, 265, 302
BseJI GATNNNNATC 2 cut(s) 24, 801
BseLI CCNNNNNNNGG 2 cut(s) 270, 609
BseMI GCAATG 1 cut(s) 822
BseMII CTCAG 3 cut(s) 292, 608, 622
BseNI ACTGG 1 cut(s) 568
BsePI GCGCGC 1 cut(s) 51
BseXI GCAGC 4 cut(s) 25, 45, 463, 674
Bsh1236I CGCG 2 cut(s) 53, 760
BshFI GGCC 1 cut(s) 542
BsiSI CCGG 2 cut(s) 56, 188
BslI CCNNNNNNNGG 2 cut(s) 270, 609
BsmAI GTCTC 1 cut(s) 435
BsmI GAATGC 1 cut(s) 387
BsnI GGCC 1 cut(s) 542
Bsp119I TTCGAA 1 cut(s) 99
Bsp143I GATC 7 cut(s) 19, 190, 699, 730, 746, 796, 802
Bsp1720I GCTNAGC 1 cut(s) 278
BspACI CCGC 2 cut(s) 11, 489
BspANI GGCC 1 cut(s) 542
BspCNI CTCAG 3 cut(s) 291, 609, 621
BspFNI CGCG 2 cut(s) 53, 760
BspPI GGATC 3 cut(s) 198, 754, 804
BspQI GCTCTTC 1 cut(s) 236
BspT104I TTCGAA 1 cut(s) 99
BsrDI GCAATG 1 cut(s) 822
BsrI ACTGG 1 cut(s) 568
BssECI CCNNGG 2 cut(s) 78, 492
BssHII GCGCGC 1 cut(s) 51
BssMI GATC 7 cut(s) 19, 190, 699, 730, 746, 796, 802
BssNAI GTATAC 1 cut(s) 44
BssNI GRCGYC 1 cut(s) 680
BssT1I CCWWGG 2 cut(s) 78, 492
Bst1107I GTATAC 1 cut(s) 44
Bst2UI CCWGG 1 cut(s) 428
Bst4CI ACNGT 1 cut(s) 319
Bst6I CTCTTC 1 cut(s) 236
BstACI GRCGYC 1 cut(s) 680
BstBI TTCGAA 1 cut(s) 99
BstC8I GCNNGC 3 cut(s) 53, 62, 481
BstDEI CTNAG 3 cut(s) 278, 608, 617
BstF5I GGATG 3 cut(s) 87, 265, 302
BstFNI CGCG 2 cut(s) 53, 760
BstHHI GCGC 2 cut(s) 53, 55
BstKTI GATC 7 cut(s) 22, 193, 702, 733, 749, 799, 805
BstMAI GTCTC 1 cut(s) 435
BstMBI GATC 7 cut(s) 19, 190, 699, 730, 746, 796, 802
BstMWI GCNNNNNNNGC 5 cut(s) 10, 57, 61, 252, 757
BstNI CCWGG 1 cut(s) 428
BstNSI RCATGY 2 cut(s) 344, 483
BstSCI CCNGG 2 cut(s) 55, 426
BstUI CGCG 2 cut(s) 53, 760
BstV1I GCAGC 4 cut(s) 25, 45, 463, 674
BstV2I GAAGAC 1 cut(s) 111
BstZ17I GTATAC 1 cut(s) 44
BsuRI GGCC 1 cut(s) 542
BtrI CACGTC 1 cut(s) 223
BtsCI GGATG 3 cut(s) 87, 265, 302
BtsI GCAGTG 1 cut(s) 234
BtsIMutI CAGTG 1 cut(s) 234
Cac8I GCNNGC 3 cut(s) 53, 62, 481
CfoI GCGC 2 cut(s) 53, 55
Cfr13I GGNCC 2 cut(s) 232, 450
CseI GACGC 2 cut(s) 25, 283
Csp6I GTAC 2 cut(s) 338, 424
CviAII CATG 4 cut(s) 256, 326, 341, 480
CviJI RGCY 9 cut(s) 16, 86, 187, 282, 287, 431, 457, 542, 736
CviKI_1 RGCY 9 cut(s) 16, 86, 187, 282, 287, 431, 457, 542, 736
CviQI GTAC 2 cut(s) 338, 424
DdeI CTNAG 3 cut(s) 278, 608, 617
DpnI GATC 7 cut(s) 21, 192, 701, 732, 748, 798, 804
DpnII GATC 7 cut(s) 19, 190, 699, 730, 746, 796, 802
Eam1104I CTCTTC 1 cut(s) 236
EarI CTCTTC 1 cut(s) 236
Eco130I CCWWGG 2 cut(s) 78, 492
Eco32I GATATC 1 cut(s) 600
Eco47I GGWCC 2 cut(s) 232, 450
EcoRI GAATTC 1 cut(s) 95
EcoRII CCWGG 1 cut(s) 426
EcoRV GATATC 1 cut(s) 600
EcoT14I CCWWGG 2 cut(s) 78, 492
EcoT22I ATGCAT 1 cut(s) 667
ErhI CCWWGG 2 cut(s) 78, 492
FaeI CATG 4 cut(s) 259, 329, 344, 483
FatI CATG 4 cut(s) 255, 325, 340, 479
FauNDI CATATG 1 cut(s) 704
FbaI TGATCA 2 cut(s) 19, 730
FblI GTMKAC 1 cut(s) 43
Fnu4HI GCNGC 5 cut(s) 11, 14, 34, 477, 688
FokI GGATG 3 cut(s) 74, 272, 289
Fsp4HI GCNGC 5 cut(s) 11, 14, 34, 477, 688
FspBI CTAG 3 cut(s) 252, 581, 624
GlaI GCGC 2 cut(s) 52, 54
GluI GCNGC 5 cut(s) 11, 14, 34, 477, 688
GsuI CTGGAG 1 cut(s) 654
HaeIII GGCC 1 cut(s) 542
HapII CCGG 2 cut(s) 56, 188
HgaI GACGC 2 cut(s) 25, 283
HhaI GCGC 2 cut(s) 53, 55
Hin1I GRCGYC 1 cut(s) 680
Hin1II CATG 4 cut(s) 259, 329, 344, 483
Hin6I GCGC 2 cut(s) 51, 53
HinP1I GCGC 2 cut(s) 51, 53
HincII GTYRAC 1 cut(s) 786
HindII GTYRAC 1 cut(s) 786
HinfI GANTC 5 cut(s) 125, 248, 360, 403, 577
HpaII CCGG 2 cut(s) 56, 188
HphI GGTGA 2 cut(s) 427, 736
Hpy166II GTNNAC 3 cut(s) 44, 232, 786
Hpy188I TCNGA 4 cut(s) 30, 130, 651, 746
Hpy188III TCNNGA 8 cut(s) 203, 271, 434, 610, 624, 671, 800, 806
Hpy8I GTNNAC 3 cut(s) 44, 232, 786
Hpy99I CGWCG 3 cut(s) 41, 227, 682
HpyAV CCTTC 5 cut(s) 75, 203, 275, 378, 762
HpyCH4III ACNGT 1 cut(s) 319
HpyCH4IV ACGT 4 cut(s) 222, 471, 570, 680
HpyCH4V TGCA 5 cut(s) 479, 536, 665, 708, 773
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 57, 61, 252, 757
HpyF3I CTNAG 3 cut(s) 278, 608, 617
HpySE526I ACGT 4 cut(s) 222, 471, 570, 680
Hsp92I GRCGYC 1 cut(s) 680
Hsp92II CATG 4 cut(s) 259, 329, 344, 483
HspAI GCGC 2 cut(s) 51, 53
Ksp22I TGATCA 2 cut(s) 19, 730
Kzo9I GATC 7 cut(s) 19, 190, 699, 730, 746, 796, 802
LguI GCTCTTC 1 cut(s) 236
LmnI GCTCC 2 cut(s) 9, 462
Lsp1109I GCAGC 4 cut(s) 25, 45, 463, 674
LweI GCATC 2 cut(s) 250, 674
MaeI CTAG 3 cut(s) 252, 581, 624
MaeII ACGT 4 cut(s) 222, 471, 570, 680
MaeIII GTNAC 1 cut(s) 289
MalI GATC 7 cut(s) 21, 192, 701, 732, 748, 798, 804
MboI GATC 7 cut(s) 19, 190, 699, 730, 746, 796, 802
MboII GAAGA 5 cut(s) 113, 116, 218, 253, 586
MfeI CAATTG 2 cut(s) 163, 531
MluCI AATT 5 cut(s) 95, 163, 354, 531, 775
MlyI GAGTC 2 cut(s) 257, 412
MmeI TCCRAC 2 cut(s) 568, 584
MnlI CCTC 4 cut(s) 130, 612, 766, 787
Mph1103I ATGCAT 1 cut(s) 667
MseI TTAA 2 cut(s) 485, 498
MspI CCGG 2 cut(s) 56, 188
MspR9I CCNGG 2 cut(s) 57, 428
MunI CAATTG 2 cut(s) 163, 531
Mva1269I GAATGC 1 cut(s) 387
MvaI CCWGG 1 cut(s) 428
MvnI CGCG 2 cut(s) 53, 760
MwoI GCNNNNNNNGC 5 cut(s) 10, 57, 61, 252, 757
NciI CCSGG 1 cut(s) 57
NdeI CATATG 1 cut(s) 704
NdeII GATC 7 cut(s) 19, 190, 699, 730, 746, 796, 802
NlaIII CATG 4 cut(s) 259, 329, 344, 483
NsiI ATGCAT 1 cut(s) 667
NspI RCATGY 2 cut(s) 344, 483
NspV TTCGAA 1 cut(s) 99
PaeI GCATGC 1 cut(s) 483
PauI GCGCGC 1 cut(s) 51
PciI ACATGT 1 cut(s) 340
PciSI GCTCTTC 1 cut(s) 236
PctI GAATGC 1 cut(s) 387
PfeI GAWTC 3 cut(s) 125, 360, 577
PkrI GCNGC 5 cut(s) 12, 15, 35, 478, 689
PleI GAGTC 2 cut(s) 256, 411
PpsI GAGTC 2 cut(s) 256, 411
PscI ACATGT 1 cut(s) 340
Psp6I CCWGG 1 cut(s) 426
PspGI CCWGG 1 cut(s) 426
PspPI GGNCC 2 cut(s) 232, 450
PteI GCGCGC 1 cut(s) 51
RsaI GTAC 2 cut(s) 339, 425
RsaNI GTAC 2 cut(s) 338, 424
SapI GCTCTTC 1 cut(s) 236
SaqAI TTAA 2 cut(s) 485, 498
SatI GCNGC 5 cut(s) 11, 14, 34, 477, 688
Sau3AI GATC 7 cut(s) 19, 190, 699, 730, 746, 796, 802
Sau96I GGNCC 2 cut(s) 232, 450
SchI GAGTC 2 cut(s) 257, 412
ScrFI CCNGG 2 cut(s) 57, 428
SfaNI GCATC 2 cut(s) 250, 674
SfuI TTCGAA 1 cut(s) 99
SinI GGWCC 2 cut(s) 232, 450
SmlI CTYRAG 2 cut(s) 432, 461
SmoI CTYRAG 2 cut(s) 432, 461
SphI GCATGC 1 cut(s) 483
Sse9I AATT 5 cut(s) 95, 163, 354, 531, 775
SsiI CCGC 2 cut(s) 11, 489
SspMI CTAG 3 cut(s) 252, 581, 624
StyD4I CCNGG 2 cut(s) 55, 426
StyI CCWWGG 2 cut(s) 78, 492
TaaI ACNGT 1 cut(s) 319
TaiI ACGT 4 cut(s) 225, 474, 573, 683
TaqI TCGA 3 cut(s) 99, 358, 504
TasI AATT 5 cut(s) 95, 163, 354, 531, 775
TauI GCSGC 1 cut(s) 13
TfiI GAWTC 3 cut(s) 125, 360, 577
Tru1I TTAA 2 cut(s) 485, 498
Tru9I TTAA 2 cut(s) 485, 498
TscAI CASTG 1 cut(s) 234
TseI GCWGC 4 cut(s) 13, 33, 476, 687
TspDTI ATGAA 3 cut(s) 254, 288, 352
TspRI CASTG 1 cut(s) 234
VpaK11BI GGWCC 2 cut(s) 232, 450
XapI RAATTY 2 cut(s) 95, 775
XbaI TCTAGA 1 cut(s) 623
XceI RCATGY 2 cut(s) 344, 483
XmiI GTMKAC 1 cut(s) 43
XspI CTAG 3 cut(s) 252, 581, 624
ZraI GACGTC 1 cut(s) 681
Zsp2I ATGCAT 1 cut(s) 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.