Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015051.1

Orthogroup ID

OG0015335

Physical Location & Seq

Genomic Coordinates Forward (+)

21209 .. 21982

Gene Structure 774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015051.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

atgaccaccacctctacctccccatggaactctcgcttaagagagctcgcaaagcaatgcctcttctccgaagctctcactctttaccgccaaatgctccgattcggccacccacccaacgctttcactttccccttcgctctcaaatcctgcgccgccctctccctccctctcaccggttcgctcctccattcccacgtcgtcaaaaccgggtgcgggcccgaccccttcgtacaaacttctttggtttccatgtactgtaaatgctgttcgaccgatgacgcacgcaaggtgttcgatgaaaatccccactcgaggaagctgactgtttgctacaatgctttgatatctgggcatgcttcgaattcgaagtttcgtgatgcggtttcgttgtttcgtcgaatgagggaggagggcgtagaggttaattcggttaccatgctgggtttgattcctgggtgcgtggcgccggtgcatttgagtcttgcgatgtgccttcatggttctagtgtgaagtgcggtttcgacgttgatttgtctgtgaggaattgtttgcttacaatgtatgtgaaatgtgggtcagtagataatgcaaggaagatctttgatgcaatgccggaaaagggtttgattacttggaatgcaatgatttccgggtatgcgcagaatgggcttgccactcatgttttgaacctgtacagggagatggaatcttgtggtgtttgccctgatcctgtgacgcttgttggcgttctatcgtcgtgtactcacctt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016553 GO:0016554 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

258

Amino Acids

28.22

Weight (kDa)

8.49

Isoelectric Point (pI)

35.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11460
fragaria_vesca	FvH4_6g19130
malus_domestica	MD14G1027300.v1.1
prunus_persica	Prupe.7G104400_v2.0.a1
pyrus_communis	pycom14g02600
rosa_chinensis	RchiOBHm_Chr3g0474241
rosa_laevigata	RLG00000023936 RLG00000023939
rosa_multiflora	Rmu_sc0004507.1_g000021 Rmu_sc0015051.1_g000006
rosa_roxburghii	Rroxscaffold_6G00407410
rosa_rugosa	Rorug03G0139800
rosa_samantha	Rh3AG190200 Rh3BG219500 Rh3DG215000
rosa_wichuraiana	Rw3G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	663
AccB1I	GGYRCC	1 cut(s)	466
AciI	CCGC	5 cut(s)	88, 156, 216, 383, 519
AclWI	GGATC	1 cut(s)	725
AcoI	YGGCCR	1 cut(s)	106
AcsI	RAATTY	1 cut(s)	364
AcyI	GRCGYC	1 cut(s)	467
AfaI	GTAC	4 cut(s)	234, 257, 698, 766
AfiI	CCNNNNNNNGG	6 cut(s)	24, 176, 216, 315, 623, 700
AflII	CTTAAG	1 cut(s)	37
AgeI	ACCGGT	1 cut(s)	176
AgsI	TTSAA	1 cut(s)	691
AjiI	CACGTC	1 cut(s)	199
AjnI	CCWGG	1 cut(s)	454
AluBI	AGCT	3 cut(s)	46, 74, 322
AluI	AGCT	3 cut(s)	46, 74, 322
Alw21I	GWGCWC	1 cut(s)	48
AlwI	GGATC	1 cut(s)	725
Ama87I	CYCGRG	1 cut(s)	313
AoxI	GGCC	2 cut(s)	106, 218
ApaI	GGGCCC	1 cut(s)	222
ApoI	RAATTY	1 cut(s)	364
AsiGI	ACCGGT	1 cut(s)	176
AspLEI	GCGC	3 cut(s)	155, 469, 664
AspS9I	GGNCC	2 cut(s)	218, 219
AsuC2I	CCSGG	2 cut(s)	211, 655
AsuHPI	GGTGA	2 cut(s)	166, 761
AsuII	TTCGAA	2 cut(s)	362, 368
AvaI	CYCGRG	1 cut(s)	313
BaeGI	GKGCMC	1 cut(s)	222
BanI	GGYRCC	1 cut(s)	466
BanII	GRGCYC	2 cut(s)	48, 222
Bbv12I	GWGCWC	1 cut(s)	48
BccI	CCATC	1 cut(s)	700
BcgI	CGANNNNNNTGC	2 cut(s)	277, 311
BciT130I	CCWGG	1 cut(s)	456
BcnI	CCSGG	2 cut(s)	211, 655
BfaI	CTAG	1 cut(s)	507
BfoI	RGCGCY	1 cut(s)	470
BfrI	CTTAAG	1 cut(s)	37
BglII	AGATCT	1 cut(s)	600
BisI	GCNGC	1 cut(s)	156
BlsI	GCNGC	1 cut(s)	157
Bme1390I	CCNGG	3 cut(s)	211, 456, 655
BmeT110I	CYCGRG	1 cut(s)	313
BmgBI	CACGTC	1 cut(s)	199
BmgT120I	GGNCC	2 cut(s)	218, 219
BmiI	GGNNCC	2 cut(s)	220, 468
BmrFI	CCNGG	3 cut(s)	211, 456, 655
BmsI	GCATC	2 cut(s)	370, 598
Bpu14I	TTCGAA	2 cut(s)	362, 368
BpuMI	CCSGG	2 cut(s)	211, 655
BsaBI	GATNNNNATC	1 cut(s)	303
BsaHI	GRCGYC	1 cut(s)	467
BsaJI	CCNNGG	2 cut(s)	23, 455
BsaWI	WCCGGW	1 cut(s)	176
Bsc4I	CCNNNNNNNGG	6 cut(s)	24, 176, 216, 315, 623, 700
Bse118I	RCCGGY	2 cut(s)	176, 469
Bse3DI	GCAATG	3 cut(s)	62, 618, 651
Bse8I	GATNNNNATC	1 cut(s)	303
BseBI	CCWGG	1 cut(s)	456
BseDI	CCNNGG	2 cut(s)	23, 455
BseJI	GATNNNNATC	1 cut(s)	303
BseLI	CCNNNNNNNGG	6 cut(s)	24, 176, 216, 315, 623, 700
BseMI	GCAATG	3 cut(s)	62, 618, 651
BseRI	GAGGAG	2 cut(s)	176, 425
BseSI	GKGCMC	1 cut(s)	222
BseYI	CCCAGC	1 cut(s)	442
Bsh1285I	CGRYCG	1 cut(s)	276
BshFI	GGCC	2 cut(s)	108, 220
BshNI	GGYRCC	1 cut(s)	466
BshTI	ACCGGT	1 cut(s)	176
BsiEI	CGRYCG	1 cut(s)	276
BsiHKAI	GWGCWC	1 cut(s)	48
BsiHKCI	CYCGRG	1 cut(s)	313
BsiSI	CCGG	5 cut(s)	177, 210, 470, 617, 654
BslI	CCNNNNNNNGG	6 cut(s)	24, 176, 216, 315, 623, 700
BsmI	GAATGC	1 cut(s)	646
BsnI	GGCC	2 cut(s)	108, 220
BsoBI	CYCGRG	1 cut(s)	313
Bsp119I	TTCGAA	2 cut(s)	362, 368
Bsp120I	GGGCCC	1 cut(s)	218
Bsp1286I	GDGCHC	2 cut(s)	48, 222
Bsp1407I	TGTACA	1 cut(s)	696
Bsp143I	GATC	2 cut(s)	600, 730
Bsp19I	CCATGG	1 cut(s)	23
BspACI	CCGC	5 cut(s)	88, 156, 216, 383, 519
BspANI	GGCC	2 cut(s)	108, 220
BspLI	GGNNCC	2 cut(s)	220, 468
BspPI	GGATC	1 cut(s)	725
BspT104I	TTCGAA	2 cut(s)	362, 368
BspT107I	GGYRCC	1 cut(s)	466
BspTI	CTTAAG	1 cut(s)	37
BsrDI	GCAATG	3 cut(s)	62, 618, 651
BsrFI	RCCGGY	2 cut(s)	176, 469
BsrGI	TGTACA	1 cut(s)	696
BssAI	RCCGGY	2 cut(s)	176, 469
BssECI	CCNNGG	2 cut(s)	23, 455
BssMI	GATC	2 cut(s)	600, 730
BssNI	GRCGYC	1 cut(s)	467
BssT1I	CCWWGG	1 cut(s)	23
Bst2UI	CCWGG	1 cut(s)	456
Bst4CI	ACNGT	2 cut(s)	260, 328
Bst6I	CTCTTC	1 cut(s)	68
BstACI	GRCGYC	1 cut(s)	467
BstAFI	CTTAAG	1 cut(s)	37
BstAUI	TGTACA	1 cut(s)	696
BstBI	TTCGAA	2 cut(s)	362, 368
BstC8I	GCNNGC	5 cut(s)	48, 218, 286, 357, 675
BstDSI	CCRYGG	1 cut(s)	23
BstEII	GGTNACC	1 cut(s)	433
BstH2I	RGCGCY	1 cut(s)	470
BstHHI	GCGC	3 cut(s)	155, 469, 664
BstKTI	GATC	2 cut(s)	603, 733
BstMBI	GATC	2 cut(s)	600, 730
BstMCI	CGRYCG	1 cut(s)	276
BstMWI	GCNNNNNNNGC	2 cut(s)	52, 670
BstNI	CCWGG	1 cut(s)	456
BstNSI	RCATGY	1 cut(s)	359
BstPI	GGTNACC	1 cut(s)	433
BstSCI	CCNGG	3 cut(s)	209, 454, 653
BstSLI	GKGCMC	1 cut(s)	222
BstX2I	RGATCY	1 cut(s)	600
BstYI	RGATCY	1 cut(s)	600
BsuRI	GGCC	2 cut(s)	108, 220
BtgI	CCRYGG	1 cut(s)	23
BtgZI	GCGATG	1 cut(s)	503
BtrI	CACGTC	1 cut(s)	199
Cac8I	GCNNGC	5 cut(s)	48, 218, 286, 357, 675
CfoI	GCGC	3 cut(s)	155, 469, 664
Cfr10I	RCCGGY	2 cut(s)	176, 469
Cfr13I	GGNCC	2 cut(s)	218, 219
CseI	GACGC	2 cut(s)	290, 748
Csp6I	GTAC	4 cut(s)	233, 256, 697, 765
CspAI	ACCGGT	1 cut(s)	176
CviAII	CATG	6 cut(s)	24, 253, 356, 439, 500, 683
CviJI	RGCY	6 cut(s)	46, 74, 108, 220, 322, 673
CviKI_1	RGCY	6 cut(s)	46, 74, 108, 220, 322, 673
CviQI	GTAC	4 cut(s)	233, 256, 697, 765
DinI	GGCGCC	1 cut(s)	468
DpnI	GATC	2 cut(s)	602, 732
DpnII	GATC	2 cut(s)	600, 730
EaeI	YGGCCR	1 cut(s)	106
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Ecl136II	GAGCTC	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	23
Eco24I	GRGCYC	2 cut(s)	48, 222
Eco32I	GATATC	1 cut(s)	348
Eco53kI	GAGCTC	1 cut(s)	46
Eco88I	CYCGRG	1 cut(s)	313
Eco91I	GGTNACC	1 cut(s)	433
EcoICRI	GAGCTC	1 cut(s)	46
EcoO65I	GGTNACC	1 cut(s)	433
EcoRI	GAATTC	1 cut(s)	364
EcoRII	CCWGG	1 cut(s)	454
EcoRV	GATATC	1 cut(s)	348
EcoT14I	CCWWGG	1 cut(s)	23
EcoT38I	GRGCYC	2 cut(s)	48, 222
EgeI	GGCGCC	1 cut(s)	468
EheI	GGCGCC	1 cut(s)	468
ErhI	CCWWGG	1 cut(s)	23
FaeI	CATG	6 cut(s)	27, 256, 359, 442, 503, 686
FaiI	YATR	8 cut(s)	25, 254, 357, 440, 501, 567, 660, 684
FatI	CATG	6 cut(s)	23, 252, 355, 438, 499, 682
FauI	CCCGC	1 cut(s)	209
Fnu4HI	GCNGC	1 cut(s)	156
FriOI	GRGCYC	2 cut(s)	48, 222
Fsp4HI	GCNGC	1 cut(s)	156
FspBI	CTAG	1 cut(s)	507
FspI	TGCGCA	1 cut(s)	663
GlaI	GCGC	3 cut(s)	154, 468, 663
GluI	GCNGC	1 cut(s)	156
GsaI	CCCAGC	1 cut(s)	446
HaeII	RGCGCY	1 cut(s)	470
HaeIII	GGCC	2 cut(s)	108, 220
HapII	CCGG	5 cut(s)	177, 210, 470, 617, 654
HgaI	GACGC	2 cut(s)	290, 748
HhaI	GCGC	3 cut(s)	155, 469, 664
Hin1I	GRCGYC	1 cut(s)	467
Hin1II	CATG	6 cut(s)	27, 256, 359, 442, 503, 686
Hin6I	GCGC	3 cut(s)	153, 467, 662
HinP1I	GCGC	3 cut(s)	153, 467, 662
HinfI	GANTC	4 cut(s)	102, 451, 481, 710
HpaII	CCGG	5 cut(s)	177, 210, 470, 617, 654
HphI	GGTGA	2 cut(s)	166, 761
Hpy166II	GTNNAC	1 cut(s)	765
Hpy188I	TCNGA	2 cut(s)	70, 101
Hpy188III	TCNNGA	1 cut(s)	377
Hpy8I	GTNNAC	1 cut(s)	765
Hpy99I	CGWCG	4 cut(s)	203, 402, 530, 763
HpyAV	CCTTC	3 cut(s)	145, 238, 506
HpyCH4III	ACNGT	2 cut(s)	260, 328
HpyCH4IV	ACGT	2 cut(s)	198, 528
HpyCH4V	TGCA	4 cut(s)	475, 593, 611, 644
HpyF10VI	GCNNNNNNNGC	2 cut(s)	52, 670
HpySE526I	ACGT	2 cut(s)	198, 528
Hsp92I	GRCGYC	1 cut(s)	467
Hsp92II	CATG	6 cut(s)	27, 256, 359, 442, 503, 686
HspAI	GCGC	3 cut(s)	153, 467, 662
KasI	GGCGCC	1 cut(s)	466
Kzo9I	GATC	2 cut(s)	600, 730
LmnI	GCTCC	2 cut(s)	102, 189
LweI	GCATC	2 cut(s)	370, 598
MaeI	CTAG	1 cut(s)	507
MaeII	ACGT	2 cut(s)	198, 528
MaeIII	GTNAC	2 cut(s)	433, 736
MalI	GATC	2 cut(s)	602, 732
MboI	GATC	2 cut(s)	600, 730
MboII	GAAGA	2 cut(s)	55, 610
MflI	RGATCY	1 cut(s)	600
MhlI	GDGCHC	2 cut(s)	48, 222
MluCI	AATT	3 cut(s)	364, 427, 547
Mly113I	GGCGCC	1 cut(s)	467
MlyI	GAGTC	1 cut(s)	490
MseI	TTAA	2 cut(s)	38, 426
MspCI	CTTAAG	1 cut(s)	37
MspI	CCGG	5 cut(s)	177, 210, 470, 617, 654
MspR9I	CCNGG	3 cut(s)	211, 456, 655
Mva1269I	GAATGC	1 cut(s)	646
MvaI	CCWGG	1 cut(s)	456
MwoI	GCNNNNNNNGC	2 cut(s)	52, 670
NarI	GGCGCC	1 cut(s)	467
NciI	CCSGG	2 cut(s)	211, 655
NcoI	CCATGG	1 cut(s)	23
NdeII	GATC	2 cut(s)	600, 730
NlaIII	CATG	6 cut(s)	27, 256, 359, 442, 503, 686
NlaIV	GGNNCC	2 cut(s)	220, 468
NmuCI	GTSAC	1 cut(s)	736
NsbI	TGCGCA	1 cut(s)	663
NspI	RCATGY	1 cut(s)	359
NspV	TTCGAA	2 cut(s)	362, 368
PaeI	GCATGC	1 cut(s)	359
PaeR7I	CTCGAG	1 cut(s)	313
PctI	GAATGC	1 cut(s)	646
PfeI	GAWTC	3 cut(s)	102, 451, 710
PinAI	ACCGGT	1 cut(s)	176
PkrI	GCNGC	1 cut(s)	157
PleI	GAGTC	1 cut(s)	489
PluTI	GGCGCC	1 cut(s)	470
PpsI	GAGTC	1 cut(s)	489
Psp124BI	GAGCTC	1 cut(s)	48
Psp6I	CCWGG	1 cut(s)	454
PspEI	GGTNACC	1 cut(s)	433
PspFI	CCCAGC	1 cut(s)	442
PspGI	CCWGG	1 cut(s)	454
PspN4I	GGNNCC	2 cut(s)	220, 468
PspOMI	GGGCCC	1 cut(s)	218
PspPI	GGNCC	2 cut(s)	218, 219
PspXI	VCTCGAGB	1 cut(s)	313
PsrI	GAACNNNNNNTAC	2 cut(s)	253, 285
PsuI	RGATCY	1 cut(s)	600
RsaI	GTAC	4 cut(s)	234, 257, 698, 766
RsaNI	GTAC	4 cut(s)	233, 256, 697, 765
SacI	GAGCTC	1 cut(s)	48
SaqAI	TTAA	2 cut(s)	38, 426
SatI	GCNGC	1 cut(s)	156
Sau3AI	GATC	2 cut(s)	600, 730
Sau96I	GGNCC	2 cut(s)	218, 219
SchI	GAGTC	1 cut(s)	490
ScrFI	CCNGG	3 cut(s)	211, 456, 655
SduI	GDGCHC	2 cut(s)	48, 222
SfaNI	GCATC	2 cut(s)	370, 598
SfoI	GGCGCC	1 cut(s)	468
Sfr274I	CTCGAG	1 cut(s)	313
SfuI	TTCGAA	2 cut(s)	362, 368
SgrAI	CRCCGGYG	1 cut(s)	469
SlaI	CTCGAG	1 cut(s)	313
SmlI	CTYRAG	2 cut(s)	37, 313
SmoI	CTYRAG	2 cut(s)	37, 313
SphI	GCATGC	1 cut(s)	359
Sse9I	AATT	3 cut(s)	364, 427, 547
SsiI	CCGC	5 cut(s)	88, 156, 216, 383, 519
SspDI	GGCGCC	1 cut(s)	466
SspMI	CTAG	1 cut(s)	507
SstI	GAGCTC	1 cut(s)	48
StyD4I	CCNGG	3 cut(s)	209, 454, 653
StyI	CCWWGG	1 cut(s)	23
TaaI	ACNGT	2 cut(s)	260, 328
TaiI	ACGT	2 cut(s)	201, 531
TaqI	TCGA	7 cut(s)	272, 297, 314, 362, 368, 400, 525
TaqII	GACCGA	1 cut(s)	290
TasI	AATT	3 cut(s)	364, 427, 547
TatI	WGTACW	3 cut(s)	255, 696, 764
TauI	GCSGC	1 cut(s)	158
TfiI	GAWTC	3 cut(s)	102, 451, 710
Tru1I	TTAA	2 cut(s)	38, 426
Tru9I	TTAA	2 cut(s)	38, 426
TseFI	GTSAC	1 cut(s)	736
Tsp45I	GTSAC	1 cut(s)	736
TspDTI	ATGAA	2 cut(s)	315, 488
Vha464I	CTTAAG	1 cut(s)	37
XapI	RAATTY	1 cut(s)	364
XceI	RCATGY	1 cut(s)	359
XhoI	CTCGAG	1 cut(s)	313
XspI	CTAG	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.