Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0015335

Physical Location & Seq

Genomic Coordinates Reverse (-)

30087148 .. 30089225

Gene Structure 2078 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00407410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1677 bp

ATGACCACCACCTCTACCTCCCCATGGAACTCTCGCTTAAGGGAGCTCGCAAAGCAATGCCTCTTCTCCGAAGCTCTCACTCTTTACCGCCAAATGCTCCGATTCGGCCACCCACCCAACGCTTTCACTTTCCCCTTCGCTCTCAAATCCTGCGCCGCCCTCTCCCTCCCTCTCACCGGTTCACTCCTCCATTCCCACGTCGTCAAAACCGGGTGCGAGCCCGACCCCTTCGTACAAACTTCTTTGGTTTCCATGTACTGTAAATGCTGTTCGACCGGTGACGCACGCAAGGTGTTCGATGAAAATCCCCACTCGAGGAAGCTGACTGTTTGCTACAATGCTTTGATATCTGGGCACGCTTCGAATTCGAAATTCCATGATGCGGTTTCGTTGTTTCGTCGAATGAGGGAGGAGGGTGTGGAGGTTAATTCGGTTACCATGTTGGGTTTGATTCCGGGGTGTGTGGCTCCGGTGCATTTGAGTCTTGGGATGTGCCTTCATGGTTCTAGTGTGAAGTGTGGTTTCGACGTTGATTTGTCTGTGAGGAATTGTTTGCTTACAATGTATGTGAAATGCGGGTCGGTAGATAATGCAAGGAAGATCTTTGATGCAATGCCGGAAAAGGGTTTGATTACTTGGAATGCAATGATTTCCGGGTATGCGCAGAATGGGCTTGCTACTCATGTTTTGAACCTGTACAGGGAGATGGAATCTTGTGCTGTTTGCCCTGATCCTGTGACGCTTGTTGGCGTTCTATCGTCGTGTACTCACCTTGGAGCGCATGGCGTTGGACGTGAGGTAGAAAGACGGATAGAGTCTAGTGGATTTGGTTCCAATCCTTATTTGAAAAATGCTCTGATCAATATGTACGCTAGGTGTGGTAATTTGGTGAAGGCTCATGCTATTTTTGATGTCATGCCTGAAAAAAGCTTAGTTTCTTGGACAGCAATTATCGGTGGGTATGGGATGCATGGACATGGAGAGATTGCATTGGAGCTCTTCGAGGAAATGATCGCGACTGGAATCAGGCCTGACAAAGCCATGTTTGTGACTGTTTTGTCTGCCTGTAGCCATGCAGGATTGACTGATGAGGGACTGGAGTGTTTTGCTGCAATGGAGAAAAACTATAGGTTGCAGCCTGGTCCAGAGCATTATTCTTGCATGGTGGATCTTTTAGGGCGTGCAGGTCGGCTTAAAGAAGCAAAAGAGCTAATTGACTCGATGCAGGTAAAGCCTGATGGTGGAGTATGGGGAGCCCTTTTGGGTGCCTGTAAAATACATAAAAATGAAAAACTAGCAGAGATAGCTTTTGAACATGTCATCGAGCTAGAACCAAAAAATAGTGGTTATTATGTGTTGATGTCAAATATATACTCTGATGCAAATAATCTAGAAGGGGTTTTAAAGGTTCGGGTTATGATGAAGGAGAGGCAGCTCAAAAAGGAGCCAGGGTGTAGCTATGTTGAGTGTAAAGGAAGAGTTCATGTTTTCTTGGCTGGGGATAGAAGCCATTGTCAGACAGAATATATATACAGCATATTGGAGGAGTTAGAAAATTTGGCCCGGGAACCTGGCGCGTCCGATGAGAATGAAGGAGAAAGAAACAAAGAGCAACTTTTGGCTCTTCAACACAGCCAGGATAAGGACTCTCTGAACTGGTTCTTGGGAGAGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016553 GO:0016554 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

558

Amino Acids

61.62

Weight (kDa)

6.41

Isoelectric Point (pI)

38.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	109 - 155	2e-10	PPR repeat family
PPR	PF01535	110 - 140	1.1e-07	PPR repeat
PPR_2	PF13041	210 - 255	3.3e-07	PPR repeat family
PPR	PF01535	211 - 239	4.1e-07	PPR repeat
PPR_2	PF13041	310 - 357	4.1e-08	PPR repeat family
PPR	PF01535	312 - 341	2.9e-06	PPR repeat
E_motif	PF20431	427 - 489	1.9e-18	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11460
fragaria_vesca	FvH4_6g19130
malus_domestica	MD14G1027300.v1.1
prunus_persica	Prupe.7G104400_v2.0.a1
pyrus_communis	pycom14g02600
rosa_chinensis	RchiOBHm_Chr3g0474241
rosa_laevigata	RLG00000023936 RLG00000023939
rosa_multiflora	Rmu_sc0004507.1_g000021 Rmu_sc0015051.1_g000006
rosa_roxburghii	Rroxscaffold_6G00407410
rosa_rugosa	Rorug03G0139800
rosa_samantha	Rh3AG190200 Rh3BG219500 Rh3DG215000
rosa_wichuraiana	Rw3G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1057
Acc16I	TGCGCA	1 cut(s)	663
Acc36I	ACCTGC	2 cut(s)	1175, 1216
AccB1I	GGYRCC	1 cut(s)	1265
AccII	CGCG	2 cut(s)	1016, 1577
AciI	CCGC	4 cut(s)	88, 156, 383, 576
AclWI	GGATC	2 cut(s)	725, 1176
AcoI	YGGCCR	1 cut(s)	106
AcsI	RAATTY	3 cut(s)	364, 371, 1555
AfaI	GTAC	5 cut(s)	234, 257, 698, 766, 869
AfiI	CCNNNNNNNGG	8 cut(s)	24, 176, 315, 382, 623, 700, 1241, 1642
AflII	CTTAAG	1 cut(s)	37
AflIII	ACRYGT	1 cut(s)	1315
AgeI	ACCGGT	2 cut(s)	176, 275
AgsI	TTSAA	4 cut(s)	691, 847, 1313, 1628
AjiI	CACGTC	2 cut(s)	199, 794
AjnI	CCWGG	4 cut(s)	1138, 1447, 1570, 1635
AjuI	GAANNNNNNNTTGG	1 cut(s)	1646
Alw21I	GWGCWC	2 cut(s)	48, 999
AlwI	GGATC	2 cut(s)	725, 1176
Ama87I	CYCGRG	2 cut(s)	313, 1563
AoxI	GGCC	3 cut(s)	106, 1028, 1560
ApeKI	GCWGC	3 cut(s)	1109, 1135, 1432
ApoI	RAATTY	3 cut(s)	364, 371, 1555
AsiGI	ACCGGT	2 cut(s)	176, 275
Asp700I	GAANNNNTTC	1 cut(s)	1658
AspLEI	GCGC	4 cut(s)	155, 664, 781, 1577
AspS9I	GGNCC	2 cut(s)	1142, 1561
AsuC2I	CCSGG	5 cut(s)	211, 456, 655, 1564, 1565
AsuHPI	GGTGA	4 cut(s)	166, 290, 761, 901
AsuII	TTCGAA	2 cut(s)	362, 368
AvaI	CYCGRG	2 cut(s)	313, 1563
AvaII	GGWCC	1 cut(s)	1142
BaeGI	GKGCMC	1 cut(s)	357
BanI	GGYRCC	1 cut(s)	1265
BanII	GRGCYC	4 cut(s)	48, 222, 999, 1258
Bbv12I	GWGCWC	2 cut(s)	48, 999
BbvI	GCAGC	3 cut(s)	1096, 1147, 1444
BccI	CCATC	2 cut(s)	700, 1232
BcgI	CGANNNNNNTGC	2 cut(s)	277, 311
BciT130I	CCWGG	4 cut(s)	1140, 1449, 1572, 1637
BclI	TGATCA	1 cut(s)	858
BcnI	CCSGG	5 cut(s)	211, 456, 655, 1564, 1565
BfaI	CTAG	6 cut(s)	507, 819, 873, 1295, 1328, 1391
BfmI	CTRYAG	2 cut(s)	1066, 1126
BfrI	CTTAAG	1 cut(s)	37
BfuAI	ACCTGC	2 cut(s)	1175, 1216
BglII	AGATCT	1 cut(s)	600
BisI	GCNGC	4 cut(s)	156, 1110, 1136, 1433
BlsI	GCNGC	4 cut(s)	157, 1111, 1137, 1434
Bme1390I	CCNGG	9 cut(s)	211, 456, 655, 1140, 1449, 1564, 1565, 1572, 1637
Bme18I	GGWCC	1 cut(s)	1142
BmeT110I	CYCGRG	2 cut(s)	313, 1563
BmgBI	CACGTC	2 cut(s)	199, 794
BmgT120I	GGNCC	2 cut(s)	1142, 1561
BmiI	GGNNCC	6 cut(s)	468, 832, 1255, 1267, 1446, 1569
BmrFI	CCNGG	9 cut(s)	211, 456, 655, 1140, 1449, 1564, 1565, 1572, 1637
BmsI	GCATC	5 cut(s)	370, 598, 957, 1212, 1369
BpmI	CTGGAG	1 cut(s)	1118
Bpu14I	TTCGAA	2 cut(s)	362, 368
BpuMI	CCSGG	5 cut(s)	211, 456, 655, 1564, 1565
BsaBI	GATNNNNATC	1 cut(s)	303
BsaJI	CCNNGG	5 cut(s)	23, 455, 772, 1448, 1563
BsaWI	WCCGGW	3 cut(s)	176, 275, 469
BsaXI	ACNNNNNCTCC	2 cut(s)	1436, 1466
Bsc4I	CCNNNNNNNGG	8 cut(s)	24, 176, 315, 382, 623, 700, 1241, 1642
Bse118I	RCCGGY	2 cut(s)	176, 275
Bse1I	ACTGG	3 cut(s)	1024, 1101, 1661
Bse3DI	GCAATG	4 cut(s)	62, 618, 651, 1119
Bse8I	GATNNNNATC	1 cut(s)	303
BseBI	CCWGG	4 cut(s)	1140, 1449, 1572, 1637
BseDI	CCNNGG	5 cut(s)	23, 455, 772, 1448, 1563
BseGI	GGATG	2 cut(s)	495, 972
BseJI	GATNNNNATC	1 cut(s)	303
BseLI	CCNNNNNNNGG	8 cut(s)	24, 176, 315, 382, 623, 700, 1241, 1642
BseMI	GCAATG	4 cut(s)	62, 618, 651, 1119
BseNI	ACTGG	3 cut(s)	1024, 1101, 1661
BseRI	GAGGAG	3 cut(s)	176, 425, 1559
BseSI	GKGCMC	1 cut(s)	357
BseXI	GCAGC	3 cut(s)	1096, 1147, 1444
BseYI	CCCAGC	1 cut(s)	1496
BsgI	GTGCAG	1 cut(s)	1203
Bsh1236I	CGCG	2 cut(s)	1016, 1577
Bsh1285I	CGRYCG	1 cut(s)	276
BshFI	GGCC	3 cut(s)	108, 1030, 1562
BshNI	GGYRCC	1 cut(s)	1265
BshTI	ACCGGT	2 cut(s)	176, 275
BsiEI	CGRYCG	1 cut(s)	276
BsiHKAI	GWGCWC	2 cut(s)	48, 999
BsiHKCI	CYCGRG	2 cut(s)	313, 1563
BsiSI	CCGG	8 cut(s)	177, 210, 276, 455, 470, 617, 654, 1564
BslFI	GGGAC	1 cut(s)	1107
BslI	CCNNNNNNNGG	8 cut(s)	24, 176, 315, 382, 623, 700, 1241, 1642
BsmFI	GGGAC	1 cut(s)	1107
BsmI	GAATGC	1 cut(s)	646
BsnI	GGCC	3 cut(s)	108, 1030, 1562
BsoBI	CYCGRG	2 cut(s)	313, 1563
Bsp119I	TTCGAA	2 cut(s)	362, 368
Bsp1286I	GDGCHC	5 cut(s)	48, 222, 357, 999, 1258
Bsp1407I	TGTACA	1 cut(s)	696
Bsp143I	GATC	5 cut(s)	600, 730, 858, 1011, 1168
Bsp19I	CCATGG	1 cut(s)	23
Bsp68I	TCGCGA	1 cut(s)	1016
BspACI	CCGC	4 cut(s)	88, 156, 383, 576
BspANI	GGCC	3 cut(s)	108, 1030, 1562
BspFNI	CGCG	2 cut(s)	1016, 1577
BspLI	GGNNCC	6 cut(s)	468, 832, 1255, 1267, 1446, 1569
BspMI	ACCTGC	2 cut(s)	1175, 1216
BspPI	GGATC	2 cut(s)	725, 1176
BspQI	GCTCTTC	2 cut(s)	1004, 1629
BspT104I	TTCGAA	2 cut(s)	362, 368
BspT107I	GGYRCC	1 cut(s)	1265
BspTI	CTTAAG	1 cut(s)	37
BsrDI	GCAATG	4 cut(s)	62, 618, 651, 1119
BsrFI	RCCGGY	2 cut(s)	176, 275
BsrGI	TGTACA	1 cut(s)	696
BsrI	ACTGG	3 cut(s)	1024, 1101, 1661
BssAI	RCCGGY	2 cut(s)	176, 275
BssECI	CCNNGG	5 cut(s)	23, 455, 772, 1448, 1563
BssMI	GATC	5 cut(s)	600, 730, 858, 1011, 1168
BssT1I	CCWWGG	2 cut(s)	23, 772
Bst2UI	CCWGG	4 cut(s)	1140, 1449, 1572, 1637
Bst4CI	ACNGT	3 cut(s)	260, 328, 1054
Bst6I	CTCTTC	4 cut(s)	68, 1004, 1471, 1629
BstAFI	CTTAAG	1 cut(s)	37
BstAUI	TGTACA	1 cut(s)	696
BstBI	TTCGAA	2 cut(s)	362, 368
BstC8I	GCNNGC	6 cut(s)	48, 218, 286, 357, 675, 1182
BstDEI	CTNAG	1 cut(s)	931
BstDSI	CCRYGG	1 cut(s)	23
BstEII	GGTNACC	1 cut(s)	433
BstF5I	GGATG	2 cut(s)	495, 972
BstFNI	CGCG	2 cut(s)	1016, 1577
BstHHI	GCGC	4 cut(s)	155, 664, 781, 1577
BstKTI	GATC	5 cut(s)	603, 733, 861, 1014, 1171
BstMBI	GATC	5 cut(s)	600, 730, 858, 1011, 1168
BstMCI	CGRYCG	1 cut(s)	276
BstMWI	GCNNNNNNNGC	4 cut(s)	52, 670, 1231, 1304
BstNI	CCWGG	4 cut(s)	1140, 1449, 1572, 1637
BstNSI	RCATGY	1 cut(s)	1319
BstPI	GGTNACC	1 cut(s)	433
BstSCI	CCNGG	9 cut(s)	209, 454, 653, 1138, 1447, 1562, 1563, 1570, 1635
BstSFI	CTRYAG	2 cut(s)	1066, 1126
BstSLI	GKGCMC	1 cut(s)	357
BstUI	CGCG	2 cut(s)	1016, 1577
BstV1I	GCAGC	3 cut(s)	1096, 1147, 1444
BstX2I	RGATCY	2 cut(s)	600, 1168
BstYI	RGATCY	2 cut(s)	600, 1168
BsuRI	GGCC	3 cut(s)	108, 1030, 1562
BtgI	CCRYGG	1 cut(s)	23
BtrI	CACGTC	2 cut(s)	199, 794
BtsCI	GGATG	2 cut(s)	495, 972
BtuMI	TCGCGA	1 cut(s)	1016
BveI	ACCTGC	2 cut(s)	1175, 1216
Cac8I	GCNNGC	6 cut(s)	48, 218, 286, 357, 675, 1182
CfoI	GCGC	4 cut(s)	155, 664, 781, 1577
Cfr10I	RCCGGY	2 cut(s)	176, 275
Cfr13I	GGNCC	2 cut(s)	1142, 1561
Cfr9I	CCCGGG	1 cut(s)	1563
CseI	GACGC	3 cut(s)	290, 748, 1566
Csp6I	GTAC	5 cut(s)	233, 256, 697, 765, 868
CspAI	ACCGGT	2 cut(s)	176, 275
CviQI	GTAC	5 cut(s)	233, 256, 697, 765, 868
DdeI	CTNAG	1 cut(s)	931
DpnI	GATC	5 cut(s)	602, 732, 860, 1013, 1170
DpnII	GATC	5 cut(s)	600, 730, 858, 1011, 1168
DraI	TTTAAA	1 cut(s)	1404
DrdI	GACNNNNNNGTC	1 cut(s)	1057
DseDI	GACNNNNNNGTC	1 cut(s)	1057
EaeI	YGGCCR	1 cut(s)	106
Eam1104I	CTCTTC	4 cut(s)	68, 1004, 1471, 1629
EarI	CTCTTC	4 cut(s)	68, 1004, 1471, 1629
Ecl136II	GAGCTC	2 cut(s)	46, 997
Eco130I	CCWWGG	2 cut(s)	23, 772
Eco147I	AGGCCT	1 cut(s)	1030
Eco24I	GRGCYC	4 cut(s)	48, 222, 999, 1258
Eco32I	GATATC	1 cut(s)	348
Eco47I	GGWCC	1 cut(s)	1142
Eco53kI	GAGCTC	2 cut(s)	46, 997
Eco88I	CYCGRG	2 cut(s)	313, 1563
Eco91I	GGTNACC	1 cut(s)	433
EcoICRI	GAGCTC	2 cut(s)	46, 997
EcoO65I	GGTNACC	1 cut(s)	433
EcoRI	GAATTC	1 cut(s)	364
EcoRII	CCWGG	4 cut(s)	1138, 1447, 1570, 1635
EcoRV	GATATC	1 cut(s)	348
EcoT14I	CCWWGG	2 cut(s)	23, 772
EcoT22I	ATGCAT	1 cut(s)	972
EcoT38I	GRGCYC	4 cut(s)	48, 222, 999, 1258
ErhI	CCWWGG	2 cut(s)	23, 772
FalI	AAGNNNNNCTT	2 cut(s)	1599, 1631
FaqI	GGGAC	1 cut(s)	1107
FauI	CCCGC	1 cut(s)	569
FbaI	TGATCA	1 cut(s)	858
Fnu4HI	GCNGC	4 cut(s)	156, 1110, 1136, 1433
FokI	GGATG	2 cut(s)	502, 979
FriOI	GRGCYC	4 cut(s)	48, 222, 999, 1258
Fsp4HI	GCNGC	4 cut(s)	156, 1110, 1136, 1433
FspBI	CTAG	6 cut(s)	507, 819, 873, 1295, 1328, 1391
FspI	TGCGCA	1 cut(s)	663
GlaI	GCGC	4 cut(s)	154, 663, 780, 1576
GluI	GCNGC	4 cut(s)	156, 1110, 1136, 1433
GsaI	CCCAGC	1 cut(s)	1500
GsuI	CTGGAG	1 cut(s)	1118
HaeIII	GGCC	3 cut(s)	108, 1030, 1562
HapII	CCGG	8 cut(s)	177, 210, 276, 455, 470, 617, 654, 1564
HgaI	GACGC	3 cut(s)	290, 748, 1566
HhaI	GCGC	4 cut(s)	155, 664, 781, 1577
Hin6I	GCGC	4 cut(s)	153, 662, 779, 1575
HinP1I	GCGC	4 cut(s)	153, 662, 779, 1575
HindIII	AAGCTT	1 cut(s)	928
HinfI	GANTC	8 cut(s)	102, 451, 481, 710, 815, 1023, 1217, 1646
HpaII	CCGG	8 cut(s)	177, 210, 276, 455, 470, 617, 654, 1564
HphI	GGTGA	4 cut(s)	166, 290, 761, 901
Hpy166II	GTNNAC	2 cut(s)	182, 765
Hpy188I	TCNGA	7 cut(s)	70, 101, 858, 1378, 1518, 1582, 1653
Hpy188III	TCNNGA	3 cut(s)	1015, 1145, 1391
Hpy8I	GTNNAC	2 cut(s)	182, 765
Hpy99I	CGWCG	4 cut(s)	203, 402, 530, 763
HpyAV	CCTTC	7 cut(s)	145, 238, 506, 886, 1388, 1417, 1586
HpyCH4III	ACNGT	3 cut(s)	260, 328, 1054
HpyCH4IV	ACGT	3 cut(s)	198, 528, 793
HpyF10VI	GCNNNNNNNGC	4 cut(s)	52, 670, 1231, 1304
HpyF3I	CTNAG	1 cut(s)	931
HpySE526I	ACGT	3 cut(s)	198, 528, 793
HspAI	GCGC	4 cut(s)	153, 662, 779, 1575
Ksp22I	TGATCA	1 cut(s)	858
Kzo9I	GATC	5 cut(s)	600, 730, 858, 1011, 1168
LguI	GCTCTTC	2 cut(s)	1004, 1629
LmnI	GCTCC	7 cut(s)	43, 102, 472, 776, 994, 1253, 1444
Lsp1109I	GCAGC	3 cut(s)	1096, 1147, 1444
LweI	GCATC	5 cut(s)	370, 598, 957, 1212, 1369
MaeI	CTAG	6 cut(s)	507, 819, 873, 1295, 1328, 1391
MaeII	ACGT	3 cut(s)	198, 528, 793
MaeIII	GTNAC	4 cut(s)	278, 433, 736, 1048
MalI	GATC	5 cut(s)	602, 732, 860, 1013, 1170
MboI	GATC	5 cut(s)	600, 730, 858, 1011, 1168
MboII	GAAGA	5 cut(s)	55, 610, 991, 1488, 1616
MflI	RGATCY	2 cut(s)	600, 1168
MhlI	GDGCHC	5 cut(s)	48, 222, 357, 999, 1258
MluCI	AATT	8 cut(s)	364, 371, 427, 547, 883, 948, 1212, 1555
MlyI	GAGTC	4 cut(s)	490, 824, 1211, 1640
MmeI	TCCRAC	1 cut(s)	769
Mph1103I	ATGCAT	1 cut(s)	972
MroXI	GAANNNNTTC	1 cut(s)	1658
MseI	TTAA	4 cut(s)	38, 426, 1194, 1403
MslI	CAYNNNNRTG	3 cut(s)	975, 1046, 1284
MspCI	CTTAAG	1 cut(s)	37
MspI	CCGG	8 cut(s)	177, 210, 276, 455, 470, 617, 654, 1564
MspR9I	CCNGG	9 cut(s)	211, 456, 655, 1140, 1449, 1564, 1565, 1572, 1637
Mva1269I	GAATGC	1 cut(s)	646
MvaI	CCWGG	4 cut(s)	1140, 1449, 1572, 1637
MvnI	CGCG	2 cut(s)	1016, 1577
MwoI	GCNNNNNNNGC	4 cut(s)	52, 670, 1231, 1304
NciI	CCSGG	5 cut(s)	211, 456, 655, 1564, 1565
NcoI	CCATGG	1 cut(s)	23
NdeII	GATC	5 cut(s)	600, 730, 858, 1011, 1168
NlaIV	GGNNCC	6 cut(s)	468, 832, 1255, 1267, 1446, 1569
NmuCI	GTSAC	3 cut(s)	278, 736, 1048
NruI	TCGCGA	1 cut(s)	1016
NsbI	TGCGCA	1 cut(s)	663
NsiI	ATGCAT	1 cut(s)	972
NspI	RCATGY	1 cut(s)	1319
NspV	TTCGAA	2 cut(s)	362, 368
PaeR7I	CTCGAG	1 cut(s)	313
PceI	AGGCCT	1 cut(s)	1030
PciI	ACATGT	1 cut(s)	1315
PciSI	GCTCTTC	2 cut(s)	1004, 1629
PctI	GAATGC	1 cut(s)	646
PdmI	GAANNNNTTC	1 cut(s)	1658
PfeI	GAWTC	4 cut(s)	102, 451, 710, 1023
PinAI	ACCGGT	2 cut(s)	176, 275
PkrI	GCNGC	4 cut(s)	157, 1111, 1137, 1434
PleI	GAGTC	4 cut(s)	489, 823, 1211, 1640
PpsI	GAGTC	4 cut(s)	489, 823, 1211, 1640
PscI	ACATGT	1 cut(s)	1315
Psp124BI	GAGCTC	2 cut(s)	48, 999
Psp6I	CCWGG	4 cut(s)	1138, 1447, 1570, 1635
PspEI	GGTNACC	1 cut(s)	433
PspFI	CCCAGC	1 cut(s)	1496
PspGI	CCWGG	4 cut(s)	1138, 1447, 1570, 1635
PspN4I	GGNNCC	6 cut(s)	468, 832, 1255, 1267, 1446, 1569
PspPI	GGNCC	2 cut(s)	1142, 1561
PspXI	VCTCGAGB	1 cut(s)	313
PsrI	GAACNNNNNNTAC	2 cut(s)	253, 285
PsuI	RGATCY	2 cut(s)	600, 1168
RruI	TCGCGA	1 cut(s)	1016
RsaI	GTAC	5 cut(s)	234, 257, 698, 766, 869
RsaNI	GTAC	5 cut(s)	233, 256, 697, 765, 868
RseI	CAYNNNNRTG	3 cut(s)	975, 1046, 1284
SacI	GAGCTC	2 cut(s)	48, 999
SapI	GCTCTTC	2 cut(s)	1004, 1629
SaqAI	TTAA	4 cut(s)	38, 426, 1194, 1403
SatI	GCNGC	4 cut(s)	156, 1110, 1136, 1433
Sau3AI	GATC	5 cut(s)	600, 730, 858, 1011, 1168
Sau96I	GGNCC	2 cut(s)	1142, 1561
SchI	GAGTC	4 cut(s)	490, 824, 1211, 1640
ScrFI	CCNGG	9 cut(s)	211, 456, 655, 1140, 1449, 1564, 1565, 1572, 1637
SduI	GDGCHC	5 cut(s)	48, 222, 357, 999, 1258
SfaNI	GCATC	5 cut(s)	370, 598, 957, 1212, 1369
SfcI	CTRYAG	2 cut(s)	1066, 1126
Sfr274I	CTCGAG	1 cut(s)	313
SfuI	TTCGAA	2 cut(s)	362, 368
SinI	GGWCC	1 cut(s)	1142
SlaI	CTCGAG	1 cut(s)	313
SmaI	CCCGGG	1 cut(s)	1565
SmiMI	CAYNNNNRTG	3 cut(s)	975, 1046, 1284
SmlI	CTYRAG	2 cut(s)	37, 313
SmoI	CTYRAG	2 cut(s)	37, 313
Sse9I	AATT	8 cut(s)	364, 371, 427, 547, 883, 948, 1212, 1555
SseBI	AGGCCT	1 cut(s)	1030
SsiI	CCGC	4 cut(s)	88, 156, 383, 576
SspMI	CTAG	6 cut(s)	507, 819, 873, 1295, 1328, 1391
SstI	GAGCTC	2 cut(s)	48, 999
StuI	AGGCCT	1 cut(s)	1030
StyD4I	CCNGG	9 cut(s)	209, 454, 653, 1138, 1447, 1562, 1563, 1570, 1635
StyI	CCWWGG	2 cut(s)	23, 772
TaaI	ACNGT	3 cut(s)	260, 328, 1054
TaiI	ACGT	3 cut(s)	201, 531, 796
TasI	AATT	8 cut(s)	364, 371, 427, 547, 883, 948, 1212, 1555
TatI	WGTACW	3 cut(s)	255, 696, 764
TauI	GCSGC	1 cut(s)	158
TfiI	GAWTC	4 cut(s)	102, 451, 710, 1023
Tru1I	TTAA	4 cut(s)	38, 426, 1194, 1403
Tru9I	TTAA	4 cut(s)	38, 426, 1194, 1403
TseFI	GTSAC	3 cut(s)	278, 736, 1048
TseI	GCWGC	3 cut(s)	1109, 1135, 1432
Tsp45I	GTSAC	3 cut(s)	278, 736, 1048
TspDTI	ATGAA	6 cut(s)	315, 488, 1302, 1436, 1472, 1605
TspGWI	ACGGA	1 cut(s)	823
TspMI	CCCGGG	1 cut(s)	1563
Vha464I	CTTAAG	1 cut(s)	37
VpaK11BI	GGWCC	1 cut(s)	1142
XapI	RAATTY	3 cut(s)	364, 371, 1555
XbaI	TCTAGA	1 cut(s)	1390
XceI	RCATGY	1 cut(s)	1319
XhoI	CTCGAG	1 cut(s)	313
XmaI	CCCGGG	1 cut(s)	1563
XmnI	GAANNNNTTC	1 cut(s)	1658
XspI	CTAG	6 cut(s)	507, 819, 873, 1295, 1328, 1391
Zsp2I	ATGCAT	1 cut(s)	972

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.