Rmu_sc0018717.1_g000001

BTB POZ domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018717.1
Physical Location & Seq
Forward (+)
435 .. 2008
1574 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018717.1_g000001.1.cds

Sequence Viewer

Length: 948 bp
atgtccccggagcggcaatcctggaccatcgatcccgacctggacgggatcgacctcgacgccgccgacttcgcctcctccctccccatcaaaaaagtcccaaacggcgacgttttcgaggcctcacgcgccggcgacgtcgaccgcctcaggtacttgttagagtccggagtcaacgtcaacgcgcgtgaccagtgggactcggtggcgctctactacgcgtgcctcgccggacacctcgaggcggcgcgtatgttgctggagagcggagctatatgcacggagcatacttttgacggcgatcggtgtcattacgcggcgctgaatttgaaggtgaggaagcttttgaaggcgtttgaggcgcggccgccgccgttggggccgttgcaggcggcgatgagagagacgttcttgggctgtgcggctaattgggcctatttggagcaggcccagtttgaaactttaggtcttccagccagtgatggatattttcctccagatgtggcattttttgttcaagggagagccattgaagctcatagagtcatcttaagtgctcggtcaccatttttcagaagaaagtttgtgactgattggaaagaacgcagggaagtgagattttcaagggaaaagttgtcatatcctgctctatacagtctcatccaattcttttactccgacagactagaagttgctgtagatgatatggaggatcttgtgaggatctgcaaagtatgtaaatgtgaatctttacaaagaattctcgagaaagaattgattcaccaaaagtatgccgagtacaaagcattgagagacatagacagctctataaaacgcttcatcttacaaggtgtctctcttcctgatgaagatcggcttcctgcaactttgcatgagatccttcagatttcccttgccaattccaccagggaacttaacctagataat

Protein Analysis

316

Amino Acids

35.98

Weight (kDa)

5.41

Isoelectric Point (pI)

49.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 141
AbsI CCTCGAGG 1 cut(s) 239
AccBSI CCGCTC 2 cut(s) 13, 267
AccI GTMKAC 1 cut(s) 141
AccII CGCG 7 cut(s) 129, 185, 187, 221, 250, 317, 364
AccIII TCCGGA 1 cut(s) 167
AclWI GGATC 5 cut(s) 26, 56, 720, 731, 892
AcoI YGGCCR 1 cut(s) 365
AcsI RAATTY 2 cut(s) 325, 759
AcuI CTGAAG 1 cut(s) 887
AcyI GRCGYC 2 cut(s) 60, 138
AfaI GTAC 2 cut(s) 155, 800
AfiI CCNNNNNNNGG 3 cut(s) 12, 244, 377
AflII CTTAAG 1 cut(s) 550
AflIII ACRYGT 1 cut(s) 219
AgsI TTSAA 6 cut(s) 331, 349, 458, 518, 533, 624
AjnI CCWGG 3 cut(s) 20, 39, 926
AluBI AGCT 4 cut(s) 272, 343, 536, 825
AluI AGCT 4 cut(s) 272, 343, 536, 825
Alw21I GWGCWC 1 cut(s) 559
Alw26I GTCTC 4 cut(s) 398, 662, 807, 859
AlwI GGATC 5 cut(s) 26, 56, 720, 731, 892
Ama87I CYCGRG 2 cut(s) 239, 764
Aor13HI TCCGGA 1 cut(s) 167
AoxI GGCC 5 cut(s) 120, 365, 380, 432, 447
ApoI RAATTY 2 cut(s) 325, 759
Asp700I GAANNNNTTC 1 cut(s) 777
AspLEI GCGC 6 cut(s) 131, 187, 211, 250, 322, 364
AspS9I GGNCC 4 cut(s) 24, 380, 432, 448
AsuC2I CCSGG 1 cut(s) 8
AsuHPI GGTGA 3 cut(s) 346, 555, 773
AvaI CYCGRG 2 cut(s) 239, 764
AvaII GGWCC 1 cut(s) 24
AxyI CCTNAGG 1 cut(s) 149
BbsI GAAGAC 1 cut(s) 461
Bbv12I GWGCWC 1 cut(s) 559
BccI CCATC 3 cut(s) 35, 95, 476
BceAI ACGGC 4 cut(s) 121, 313, 358, 367
BciT130I CCWGG 3 cut(s) 22, 41, 928
BcnI CCSGG 1 cut(s) 8
BcoDI GTCTC 4 cut(s) 398, 662, 807, 859
BfaI CTAG 2 cut(s) 686, 941
BfmI CTRYAG 1 cut(s) 696
BfoI RGCGCY 2 cut(s) 212, 323
BfrI CTTAAG 1 cut(s) 550
BglI GCCNNNNNGGC 1 cut(s) 379
BisI GCNGC 9 cut(s) 14, 63, 246, 318, 365, 368, 371, 393, 423
BlsI GCNGC 9 cut(s) 15, 64, 247, 319, 366, 369, 372, 394, 424
Bme1390I CCNGG 4 cut(s) 8, 22, 41, 928
Bme18I GGWCC 1 cut(s) 24
BmeT110I CYCGRG 2 cut(s) 239, 764
BmgT120I GGNCC 4 cut(s) 24, 380, 432, 448
BmiI GGNNCC 1 cut(s) 381
BmrFI CCNGG 4 cut(s) 8, 22, 41, 928
BmrI ACTGGG 1 cut(s) 445
BmuI ACTGGG 1 cut(s) 445
BpiI GAAGAC 1 cut(s) 461
BpmI CTGGAG 2 cut(s) 281, 480
BpuMI CCSGG 1 cut(s) 8
Bsa29I ATCGAT 1 cut(s) 30
BsaBI GATNNNNATC 1 cut(s) 870
BsaHI GRCGYC 2 cut(s) 60, 138
BsaJI CCNNGG 2 cut(s) 6, 927
BsaWI WCCGGW 1 cut(s) 167
BsaXI ACNNNNNCTCC 4 cut(s) 59, 89, 162, 192
Bsc4I CCNNNNNNNGG 3 cut(s) 12, 244, 377
Bse118I RCCGGY 1 cut(s) 131
Bse1I ACTGG 3 cut(s) 193, 451, 477
Bse21I CCTNAGG 1 cut(s) 149
Bse8I GATNNNNATC 1 cut(s) 870
BseAI TCCGGA 1 cut(s) 167
BseBI CCWGG 3 cut(s) 22, 41, 928
BseCI ATCGAT 1 cut(s) 30
BseDI CCNNGG 2 cut(s) 6, 927
BseGI GGATG 1 cut(s) 660
BseJI GATNNNNATC 1 cut(s) 870
BseLI CCNNNNNNNGG 3 cut(s) 12, 244, 377
BseMII CTCAG 1 cut(s) 163
BseNI ACTGG 3 cut(s) 193, 451, 477
BseRI GAGGAG 1 cut(s) 67
BseX3I CGGCCG 1 cut(s) 365
Bsh1236I CGCG 7 cut(s) 129, 185, 187, 221, 250, 317, 364
Bsh1285I CGRYCG 3 cut(s) 145, 304, 368
BshFI GGCC 5 cut(s) 122, 367, 382, 434, 449
BshVI ATCGAT 1 cut(s) 30
BsiEI CGRYCG 3 cut(s) 145, 304, 368
BsiHKAI GWGCWC 1 cut(s) 559
BsiHKCI CYCGRG 2 cut(s) 239, 764
BsiSI CCGG 4 cut(s) 8, 132, 168, 231
BslFI GGGAC 2 cut(s) 83, 212
BslI CCNNNNNNNGG 3 cut(s) 12, 244, 377
BsmAI GTCTC 4 cut(s) 398, 662, 807, 859
BsmBI CGTCTC 1 cut(s) 398
BsmFI GGGAC 2 cut(s) 83, 212
BsnI GGCC 5 cut(s) 122, 367, 382, 434, 449
BsoBI CYCGRG 2 cut(s) 239, 764
Bsp1286I GDGCHC 1 cut(s) 559
Bsp13I TCCGGA 1 cut(s) 167
Bsp143I GATC 7 cut(s) 31, 48, 301, 712, 723, 871, 897
BspANI GGCC 5 cut(s) 122, 367, 382, 434, 449
BspCNI CTCAG 1 cut(s) 162
BspDI ATCGAT 1 cut(s) 30
BspEI TCCGGA 1 cut(s) 167
BspFNI CGCG 7 cut(s) 129, 185, 187, 221, 250, 317, 364
BspLI GGNNCC 1 cut(s) 381
BspPI GGATC 5 cut(s) 26, 56, 720, 731, 892
BspTI CTTAAG 1 cut(s) 550
BsrBI CCGCTC 2 cut(s) 13, 267
BsrFI RCCGGY 1 cut(s) 131
BsrI ACTGG 3 cut(s) 193, 451, 477
BssAI RCCGGY 1 cut(s) 131
BssECI CCNNGG 2 cut(s) 6, 927
BssMI GATC 7 cut(s) 31, 48, 301, 712, 723, 871, 897
BssNI GRCGYC 2 cut(s) 60, 138
Bst2UI CCWGG 3 cut(s) 22, 41, 928
Bst4CI ACNGT 1 cut(s) 656
Bst6I CTCTTC 1 cut(s) 864
BstACI GRCGYC 2 cut(s) 60, 138
BstAFI CTTAAG 1 cut(s) 550
BstC8I GCNNGC 4 cut(s) 133, 223, 390, 447
BstDEI CTNAG 1 cut(s) 149
BstEII GGTNACC 1 cut(s) 561
BstF5I GGATG 1 cut(s) 660
BstFNI CGCG 7 cut(s) 129, 185, 187, 221, 250, 317, 364
BstH2I RGCGCY 2 cut(s) 212, 323
BstHHI GCGC 6 cut(s) 131, 187, 211, 250, 322, 364
BstKTI GATC 7 cut(s) 34, 51, 304, 715, 726, 874, 900
BstMAI GTCTC 4 cut(s) 398, 662, 807, 859
BstMBI GATC 7 cut(s) 31, 48, 301, 712, 723, 871, 897
BstMCI CGRYCG 3 cut(s) 145, 304, 368
BstMWI GCNNNNNNNGC 9 cut(s) 71, 128, 227, 256, 359, 370, 379, 431, 533
BstNI CCWGG 3 cut(s) 22, 41, 928
BstPI GGTNACC 1 cut(s) 561
BstSCI CCNGG 4 cut(s) 6, 20, 39, 926
BstSFI CTRYAG 1 cut(s) 696
BstUI CGCG 7 cut(s) 129, 185, 187, 221, 250, 317, 364
BstV2I GAAGAC 1 cut(s) 461
BstX2I RGATCY 3 cut(s) 712, 723, 897
BstYI RGATCY 3 cut(s) 712, 723, 897
BstZI CGGCCG 1 cut(s) 365
Bsu15I ATCGAT 1 cut(s) 30
Bsu36I CCTNAGG 1 cut(s) 149
BsuRI GGCC 5 cut(s) 122, 367, 382, 434, 449
BsuTUI ATCGAT 1 cut(s) 30
BtgZI GCGATG 1 cut(s) 410
BtsCI GGATG 1 cut(s) 660
BtsIMutI CAGTG 2 cut(s) 200, 484
Cac8I GCNNGC 4 cut(s) 133, 223, 390, 447
CciNI GCGGCCGC 1 cut(s) 365
CfoI GCGC 6 cut(s) 131, 187, 211, 250, 322, 364
Cfr10I RCCGGY 1 cut(s) 131
Cfr13I GGNCC 4 cut(s) 24, 380, 432, 448
ClaI ATCGAT 1 cut(s) 30
CseI GACGC 1 cut(s) 68
Csp6I GTAC 2 cut(s) 154, 799
CviAII CATG 1 cut(s) 893
CviQI GTAC 2 cut(s) 154, 799
DdeI CTNAG 1 cut(s) 149
DpnI GATC 7 cut(s) 33, 50, 303, 714, 725, 873, 899
DpnII GATC 7 cut(s) 31, 48, 301, 712, 723, 871, 897
EaeI YGGCCR 1 cut(s) 365
EagI CGGCCG 1 cut(s) 365
Eam1104I CTCTTC 1 cut(s) 864
EarI CTCTTC 1 cut(s) 864
EclXI CGGCCG 1 cut(s) 365
Eco147I AGGCCT 1 cut(s) 122
Eco47I GGWCC 1 cut(s) 24
Eco52I CGGCCG 1 cut(s) 365
Eco57I CTGAAG 1 cut(s) 887
Eco81I CCTNAGG 1 cut(s) 149
Eco88I CYCGRG 2 cut(s) 239, 764
Eco91I GGTNACC 1 cut(s) 561
EcoO65I GGTNACC 1 cut(s) 561
EcoRI GAATTC 1 cut(s) 759
EcoRII CCWGG 3 cut(s) 20, 39, 926
Esp3I CGTCTC 1 cut(s) 398
FaeI CATG 1 cut(s) 896
FalI AAGNNNNNCTT 2 cut(s) 861, 893
FaqI GGGAC 2 cut(s) 83, 212
FatI CATG 1 cut(s) 892
FblI GTMKAC 1 cut(s) 141
Fnu4HI GCNGC 9 cut(s) 14, 63, 246, 318, 365, 368, 371, 393, 423
FokI GGATG 1 cut(s) 647
Fsp4HI GCNGC 9 cut(s) 14, 63, 246, 318, 365, 368, 371, 393, 423
FspBI CTAG 2 cut(s) 686, 941
GlaI GCGC 6 cut(s) 130, 186, 210, 249, 321, 363
GluI GCNGC 9 cut(s) 14, 63, 246, 318, 365, 368, 371, 393, 423
GsuI CTGGAG 2 cut(s) 281, 480
HaeII RGCGCY 2 cut(s) 212, 323
HaeIII GGCC 5 cut(s) 122, 367, 382, 434, 449
HapII CCGG 4 cut(s) 8, 132, 168, 231
HgaI GACGC 1 cut(s) 68
HhaI GCGC 6 cut(s) 131, 187, 211, 250, 322, 364
Hin1I GRCGYC 2 cut(s) 60, 138
Hin1II CATG 1 cut(s) 896
Hin6I GCGC 6 cut(s) 129, 185, 209, 248, 320, 362
HinP1I GCGC 6 cut(s) 129, 185, 209, 248, 320, 362
HincII GTYRAC 3 cut(s) 142, 175, 181
HindII GTYRAC 3 cut(s) 142, 175, 181
HindIII AAGCTT 1 cut(s) 341
HinfI GANTC 6 cut(s) 164, 171, 200, 543, 746, 778
HpaII CCGG 4 cut(s) 8, 132, 168, 231
HphI GGTGA 3 cut(s) 346, 555, 773
Hpy166II GTNNAC 3 cut(s) 142, 175, 181
Hpy188I TCNGA 3 cut(s) 575, 679, 906
Hpy188III TCNNGA 6 cut(s) 35, 168, 497, 764, 766, 863
Hpy8I GTNNAC 3 cut(s) 142, 175, 181
Hpy99I CGWCG 4 cut(s) 62, 113, 140, 143
HpyAV CCTTC 3 cut(s) 325, 343, 911
HpyCH4III ACNGT 1 cut(s) 656
HpyCH4IV ACGT 4 cut(s) 111, 138, 177, 407
HpyCH4V TGCA 5 cut(s) 279, 388, 729, 884, 892
HpyF10VI GCNNNNNNNGC 9 cut(s) 71, 128, 227, 256, 359, 370, 379, 431, 533
HpyF3I CTNAG 1 cut(s) 149
HpySE526I ACGT 4 cut(s) 111, 138, 177, 407
Hsp92I GRCGYC 2 cut(s) 60, 138
Hsp92II CATG 1 cut(s) 896
HspAI GCGC 6 cut(s) 129, 185, 209, 248, 320, 362
Kpn2I TCCGGA 1 cut(s) 167
KroI GCCGGC 1 cut(s) 131
KroNI GCCGGC 1 cut(s) 133
Kzo9I GATC 7 cut(s) 31, 48, 301, 712, 723, 871, 897
LmnI GCTCC 4 cut(s) 10, 269, 283, 442
MaeI CTAG 2 cut(s) 686, 941
MaeII ACGT 4 cut(s) 111, 138, 177, 407
MaeIII GTNAC 3 cut(s) 188, 561, 586
MalI GATC 7 cut(s) 33, 50, 303, 714, 725, 873, 899
MbiI CCGCTC 2 cut(s) 13, 267
MboI GATC 7 cut(s) 31, 48, 301, 712, 723, 871, 897
MboII GAAGA 4 cut(s) 461, 588, 851, 881
MflI RGATCY 3 cut(s) 712, 723, 897
MhlI GDGCHC 1 cut(s) 559
MluCI AATT 6 cut(s) 325, 427, 665, 759, 773, 919
MluI ACGCGT 1 cut(s) 219
MlyI GAGTC 4 cut(s) 173, 180, 194, 552
MmeI TCCRAC 1 cut(s) 702
MreI CGCCGGCG 1 cut(s) 131
MroI TCCGGA 1 cut(s) 167
MroNI GCCGGC 1 cut(s) 131
MroXI GAANNNNTTC 1 cut(s) 777
MseI TTAA 2 cut(s) 551, 936
MspCI CTTAAG 1 cut(s) 550
MspI CCGG 4 cut(s) 8, 132, 168, 231
MspR9I CCNGG 4 cut(s) 8, 22, 41, 928
MvaI CCWGG 3 cut(s) 22, 41, 928
MvnI CGCG 7 cut(s) 129, 185, 187, 221, 250, 317, 364
MwoI GCNNNNNNNGC 9 cut(s) 71, 128, 227, 256, 359, 370, 379, 431, 533
NaeI GCCGGC 1 cut(s) 133
NciI CCSGG 1 cut(s) 8
NdeII GATC 7 cut(s) 31, 48, 301, 712, 723, 871, 897
NgoMIV GCCGGC 1 cut(s) 131
NlaIII CATG 1 cut(s) 896
NlaIV GGNNCC 1 cut(s) 381
NmeAIII GCCGAG 1 cut(s) 820
NmuCI GTSAC 3 cut(s) 188, 561, 586
NotI GCGGCCGC 1 cut(s) 365
PaeR7I CTCGAG 2 cut(s) 239, 764
PceI AGGCCT 1 cut(s) 122
PcsI WCGNNNNNNNCGW 1 cut(s) 63
PdiI GCCGGC 1 cut(s) 133
PdmI GAANNNNTTC 1 cut(s) 777
PfeI GAWTC 2 cut(s) 746, 778
PfoI TCCNGGA 1 cut(s) 20
PkrI GCNGC 9 cut(s) 15, 64, 247, 319, 366, 369, 372, 394, 424
Ple19I CGATCG 1 cut(s) 304
PleI GAGTC 4 cut(s) 172, 179, 194, 551
PpsI GAGTC 4 cut(s) 172, 179, 194, 551
Psp6I CCWGG 3 cut(s) 20, 39, 926
PspEI GGTNACC 1 cut(s) 561
PspGI CCWGG 3 cut(s) 20, 39, 926
PspN4I GGNNCC 1 cut(s) 381
PspPI GGNCC 4 cut(s) 24, 380, 432, 448
PspXI VCTCGAGB 1 cut(s) 239
PsuI RGATCY 3 cut(s) 712, 723, 897
PvuI CGATCG 1 cut(s) 304
RsaI GTAC 2 cut(s) 155, 800
RsaNI GTAC 2 cut(s) 154, 799
SalI GTCGAC 1 cut(s) 140
SaqAI TTAA 2 cut(s) 551, 936
SatI GCNGC 9 cut(s) 14, 63, 246, 318, 365, 368, 371, 393, 423
Sau3AI GATC 7 cut(s) 31, 48, 301, 712, 723, 871, 897
Sau96I GGNCC 4 cut(s) 24, 380, 432, 448
SchI GAGTC 4 cut(s) 173, 180, 194, 552
ScrFI CCNGG 4 cut(s) 8, 22, 41, 928
SduI GDGCHC 1 cut(s) 559
SfcI CTRYAG 1 cut(s) 696
Sfr274I CTCGAG 2 cut(s) 239, 764
SgrAI CRCCGGYG 1 cut(s) 131
SinI GGWCC 1 cut(s) 24
SlaI CTCGAG 2 cut(s) 239, 764
SmlI CTYRAG 3 cut(s) 239, 550, 764
SmoI CTYRAG 3 cut(s) 239, 550, 764
Sse9I AATT 6 cut(s) 325, 427, 665, 759, 773, 919
SseBI AGGCCT 1 cut(s) 122
SspMI CTAG 2 cut(s) 686, 941
StuI AGGCCT 1 cut(s) 122
StyD4I CCNGG 4 cut(s) 6, 20, 39, 926
TaaI ACNGT 1 cut(s) 656
TaiI ACGT 4 cut(s) 114, 141, 180, 410
TaqI TCGA 7 cut(s) 30, 51, 57, 117, 141, 240, 765
TaqII GACCGA 1 cut(s) 549
TasI AATT 6 cut(s) 325, 427, 665, 759, 773, 919
TatI WGTACW 1 cut(s) 798
TauI GCSGC 9 cut(s) 16, 65, 248, 320, 367, 370, 373, 395, 425
TfiI GAWTC 2 cut(s) 746, 778
Tru1I TTAA 2 cut(s) 551, 936
Tru9I TTAA 2 cut(s) 551, 936
TscAI CASTG 2 cut(s) 200, 484
TseFI GTSAC 3 cut(s) 188, 561, 586
Tsp45I GTSAC 3 cut(s) 188, 561, 586
TspDTI ATGAA 2 cut(s) 829, 882
TspGWI ACGGA 1 cut(s) 296
TspRI CASTG 2 cut(s) 200, 484
Vha464I CTTAAG 1 cut(s) 550
VpaK11BI GGWCC 1 cut(s) 24
XapI RAATTY 2 cut(s) 325, 759
XhoI CTCGAG 2 cut(s) 239, 764
XmiI GTMKAC 1 cut(s) 141
XmnI GAANNNNTTC 1 cut(s) 777
XspI CTAG 2 cut(s) 686, 941
ZraI GACGTC 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.